Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0012476

Physical Location & Seq

Genomic Coordinates Reverse (-)

47797396 .. 47799779

Gene Structure 2384 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG282300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGCAGCCAAAGAACCAGAGATCATCAGAGACAAGGTCCAGATGAGGAACTGGTCGAGGGCCATGAGATCCCAAGGCAAAACCATAGGCCTAGTACCCACCATGGGCTACCTCCACGACGGCCACCTTTCCCTCATCAGAGAAGCCCACGACCACTCCGACGTCATCGTCGTCTCCATCTACGTAAACCCAGGTCAGTTCTCTCCCACCGAAGACCTCTCCACATACCCATCTGATTTCCACGGCGATATCCAAAAGTTGAAGGCTCTTCCTGGTAGCGTTGATGTTGTTTTCAATCCTCACAATCTCTACGACTGTGGAACCAACAGAAGGTCGTCGGTGAGCAATGGTGAAGGGGCAAAATCGGTATCTTGTGTGGAGGAGAAGGGGTTGGGGCATGAGACATGGGTTAGAGTTGAGACATTGGAGAAGGGTATGTGTGGCAAGAGTAGGCCTGTGTTTTTCAGAGGGGTTGCGACTGTTGTCACCAAGTTGTTTAACATAGTCGACCCTGATGTTGCTCTGTTTGGGAAGAAGGATTATCAGCAATGGCGGATTATTCAGCGACTGGTTCGGGATCTTGATTTTTCCATTAGAGTCATTGGTTCTGAGGTAGTGCGTGAAAACGATGGCCTGGCAATGAGTTCGCGAAATGTGCGCCTCTCACCTGAAGAACGAGAAAAGGTACTATATATACATGCTCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004592 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006573 GO:0006575 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009081 GO:0009108 GO:0009110 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0015939 GO:0015940 GO:0016053 GO:0016874 GO:0016879 GO:0016881 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0032787 GO:0033317 GO:0034641 GO:0042364 GO:0042398 GO:0042802 GO:0042803 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046983 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051186 GO:0051188 GO:0061458 GO:0071704 GO:0072330 GO:1901564 GO:1901566 GO:1901576 GO:1901605

KEGG Pathways

Metabolic & Signaling

ko00410 ko00770 ko01100 ko01110 map00410 map00770 map01100 map01110

Pfam Domains

Protein Families

Pantoate_ligase

Protein Analysis

235

Amino Acids

26.48

Weight (kDa)

8.4

Isoelectric Point (pI)

33.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pantoate_ligase	PF02569	8 - 233	1.7e-80	Pantoate-beta-alanine ligase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012476)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48840
fragaria_vesca	FvH4_2g19300
malus_domestica	MD10G1166100.v1.1
prunus_persica	Prupe.8G204600_v2.0.a1 Prupe.8G204600_v2.0.a1
pyrus_communis	pycom10g14330
rosa_chinensis	RchiOBHm_Chr6g0285101
rosa_laevigata	RLG00000012672
rosa_multiflora	Rmu_sc0002535.1_g000036 Rmu_sc0003797.1_g000011
rosa_roxburghii	Rroxscaffold_7G00183530 Rroxscaffold_7G00183670 Rroxscaffold_7G00184030
rosa_rugosa	Rorug06G0171100
rosa_samantha	Rh6AG282300 Rh6BG283000 Rh6CG284900 Rh6DG278000
rosa_wichuraiana	Rw6G024270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	167
AatII	GACGTC	1 cut(s)	165
AccI	GTMKAC	1 cut(s)	507
AccII	CGCG	1 cut(s)	649
AciI	CCGC	1 cut(s)	553
AclWI	GGATC	2 cut(s)	63, 585
AcoI	YGGCCR	1 cut(s)	121
AcuI	CTGAAG	1 cut(s)	690
AcyI	GRCGYC	1 cut(s)	162
AfaI	GTAC	2 cut(s)	96, 687
AfiI	CCNNNNNNNGG	2 cut(s)	104, 330
AgsI	TTSAA	2 cut(s)	262, 295
AjnI	CCWGG	3 cut(s)	190, 271, 633
Alw26I	GTCTC	4 cut(s)	24, 178, 395, 413
AlwI	GGATC	2 cut(s)	63, 585
AlwNI	CAGNNNCTG	1 cut(s)	568
AoxI	GGCC	5 cut(s)	60, 88, 121, 452, 631
ApeKI	GCWGC	1 cut(s)	5
AspLEI	GCGC	1 cut(s)	660
AspS9I	GGNCC	2 cut(s)	37, 60
AsuHPI	GGTGA	4 cut(s)	352, 362, 478, 657
AvaII	GGWCC	1 cut(s)	37
BbsI	GAAGAC	1 cut(s)	219
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	3 cut(s)	185, 238, 623
BceAI	ACGGC	2 cut(s)	136, 259
BcgI	CGANNNNNNTGC	2 cut(s)	627, 661
BciT130I	CCWGG	3 cut(s)	192, 273, 635
BcoDI	GTCTC	4 cut(s)	24, 178, 395, 413
BfaI	CTAG	1 cut(s)	92
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	3 cut(s)	192, 273, 635
Bme18I	GGWCC	1 cut(s)	37
BmgT120I	GGNCC	2 cut(s)	37, 60
BmiI	GGNNCC	1 cut(s)	322
BmrFI	CCNGG	3 cut(s)	192, 273, 635
BoxI	GACNNNNGTC	1 cut(s)	482
BpiI	GAAGAC	1 cut(s)	219
BsaAI	YACGTR	1 cut(s)	184
BsaHI	GRCGYC	1 cut(s)	162
BsaJI	CCNNGG	4 cut(s)	73, 102, 190, 241
BsaXI	ACNNNNNCTCC	4 cut(s)	140, 170, 374, 404
Bsc4I	CCNNNNNNNGG	2 cut(s)	104, 330
Bse1I	ACTGG	2 cut(s)	56, 573
Bse3DI	GCAATG	3 cut(s)	352, 554, 645
BseBI	CCWGG	3 cut(s)	192, 273, 635
BseDI	CCNNGG	4 cut(s)	73, 102, 190, 241
BseLI	CCNNNNNNNGG	2 cut(s)	104, 330
BseMI	GCAATG	3 cut(s)	352, 554, 645
BseMII	CTCAG	1 cut(s)	600
BseNI	ACTGG	2 cut(s)	56, 573
BseRI	GAGGAG	1 cut(s)	395
BseXI	GCAGC	1 cut(s)	17
Bsh1236I	CGCG	1 cut(s)	649
BshFI	GGCC	5 cut(s)	62, 90, 123, 454, 633
BslI	CCNNNNNNNGG	2 cut(s)	104, 330
BsmAI	GTCTC	4 cut(s)	24, 178, 395, 413
BsmBI	CGTCTC	1 cut(s)	178
BsnI	GGCC	5 cut(s)	62, 90, 123, 454, 633
Bsp143I	GATC	3 cut(s)	21, 68, 577
Bsp19I	CCATGG	1 cut(s)	102
Bsp68I	TCGCGA	1 cut(s)	649
BspACI	CCGC	1 cut(s)	553
BspANI	GGCC	5 cut(s)	62, 90, 123, 454, 633
BspCNI	CTCAG	1 cut(s)	601
BspFNI	CGCG	1 cut(s)	649
BspLI	GGNNCC	1 cut(s)	322
BspPI	GGATC	2 cut(s)	63, 585
BspQI	GCTCTTC	1 cut(s)	273
BsrDI	GCAATG	3 cut(s)	352, 554, 645
BsrI	ACTGG	2 cut(s)	56, 573
BssECI	CCNNGG	4 cut(s)	73, 102, 190, 241
BssMI	GATC	3 cut(s)	21, 68, 577
BssNI	GRCGYC	1 cut(s)	162
BssT1I	CCWWGG	2 cut(s)	73, 102
Bst2UI	CCWGG	3 cut(s)	192, 273, 635
Bst4CI	ACNGT	2 cut(s)	317, 481
Bst6I	CTCTTC	1 cut(s)	273
BstACI	GRCGYC	1 cut(s)	162
BstBAI	YACGTR	1 cut(s)	184
BstDEI	CTNAG	1 cut(s)	609
BstDSI	CCRYGG	2 cut(s)	102, 241
BstFNI	CGCG	1 cut(s)	649
BstHHI	GCGC	1 cut(s)	660
BstKTI	GATC	3 cut(s)	24, 71, 580
BstMAI	GTCTC	4 cut(s)	24, 178, 395, 413
BstMBI	GATC	3 cut(s)	21, 68, 577
BstMWI	GCNNNNNNNGC	1 cut(s)	655
BstNI	CCWGG	3 cut(s)	192, 273, 635
BstNSI	RCATGY	1 cut(s)	701
BstPAI	GACNNNNGTC	1 cut(s)	482
BstSCI	CCNGG	3 cut(s)	190, 271, 633
BstSNI	TACGTA	1 cut(s)	184
BstUI	CGCG	1 cut(s)	649
BstV1I	GCAGC	1 cut(s)	17
BstV2I	GAAGAC	1 cut(s)	219
BstX2I	RGATCY	2 cut(s)	68, 577
BstYI	RGATCY	2 cut(s)	68, 577
BsuRI	GGCC	5 cut(s)	62, 90, 123, 454, 633
BtgI	CCRYGG	2 cut(s)	102, 241
BtuMI	TCGCGA	1 cut(s)	649
CaiI	CAGNNNCTG	1 cut(s)	568
CfoI	GCGC	1 cut(s)	660
Cfr13I	GGNCC	2 cut(s)	37, 60
Csp6I	GTAC	2 cut(s)	95, 686
CviAII	CATG	5 cut(s)	64, 103, 398, 405, 698
CviJI	RGCY	9 cut(s)	8, 62, 90, 108, 123, 146, 266, 454, 633
CviKI_1	RGCY	9 cut(s)	8, 62, 90, 108, 123, 146, 266, 454, 633
CviQI	GTAC	2 cut(s)	95, 686
DdeI	CTNAG	1 cut(s)	609
DpnI	GATC	3 cut(s)	23, 70, 579
DpnII	GATC	3 cut(s)	21, 68, 577
DrdI	GACNNNNNNGTC	1 cut(s)	167
DseDI	GACNNNNNNGTC	1 cut(s)	167
EaeI	YGGCCR	1 cut(s)	121
Eam1104I	CTCTTC	1 cut(s)	273
EarI	CTCTTC	1 cut(s)	273
EciI	GGCGGA	1 cut(s)	568
Eco105I	TACGTA	1 cut(s)	184
Eco130I	CCWWGG	2 cut(s)	73, 102
Eco147I	AGGCCT	2 cut(s)	90, 454
Eco32I	GATATC	1 cut(s)	250
Eco47I	GGWCC	1 cut(s)	37
Eco57I	CTGAAG	1 cut(s)	690
EcoRII	CCWGG	3 cut(s)	190, 271, 633
EcoRV	GATATC	1 cut(s)	250
EcoT14I	CCWWGG	2 cut(s)	73, 102
ErhI	CCWWGG	2 cut(s)	73, 102
Esp3I	CGTCTC	1 cut(s)	178
FaeI	CATG	5 cut(s)	67, 106, 401, 408, 701
FatI	CATG	5 cut(s)	63, 102, 397, 404, 697
FblI	GTMKAC	1 cut(s)	507
Fnu4HI	GCNGC	1 cut(s)	6
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	1 cut(s)	92
GlaI	GCGC	1 cut(s)	659
GluI	GCNGC	1 cut(s)	6
HaeIII	GGCC	5 cut(s)	62, 90, 123, 454, 633
HhaI	GCGC	1 cut(s)	660
Hin1I	GRCGYC	1 cut(s)	162
Hin1II	CATG	5 cut(s)	67, 106, 401, 408, 701
Hin6I	GCGC	1 cut(s)	658
HinP1I	GCGC	1 cut(s)	658
HincII	GTYRAC	1 cut(s)	508
HindII	GTYRAC	1 cut(s)	508
HinfI	GANTC	1 cut(s)	597
HphI	GGTGA	4 cut(s)	352, 362, 478, 657
Hpy166II	GTNNAC	2 cut(s)	187, 508
Hpy188I	TCNGA	6 cut(s)	29, 140, 160, 235, 467, 610
Hpy188III	TCNNGA	4 cut(s)	40, 575, 581, 648
Hpy8I	GTNNAC	2 cut(s)	187, 508
Hpy99I	CGWCG	4 cut(s)	122, 164, 173, 340
HpyAV	CCTTC	6 cut(s)	256, 324, 347, 379, 424, 529
HpyCH4III	ACNGT	2 cut(s)	317, 481
HpyCH4IV	ACGT	2 cut(s)	162, 183
HpyF10VI	GCNNNNNNNGC	1 cut(s)	655
HpyF3I	CTNAG	1 cut(s)	609
HpySE526I	ACGT	2 cut(s)	162, 183
Hsp92I	GRCGYC	1 cut(s)	162
Hsp92II	CATG	5 cut(s)	67, 106, 401, 408, 701
HspAI	GCGC	1 cut(s)	658
Kzo9I	GATC	3 cut(s)	21, 68, 577
LguI	GCTCTTC	1 cut(s)	273
Lsp1109I	GCAGC	1 cut(s)	17
MaeI	CTAG	1 cut(s)	92
MaeII	ACGT	2 cut(s)	162, 183
MaeIII	GTNAC	1 cut(s)	484
MalI	GATC	3 cut(s)	23, 70, 579
MboI	GATC	3 cut(s)	21, 68, 577
MboII	GAAGA	4 cut(s)	224, 260, 544, 683
MflI	RGATCY	2 cut(s)	68, 577
MlyI	GAGTC	1 cut(s)	606
MmeI	TCCRAC	1 cut(s)	183
MseI	TTAA	2 cut(s)	498, 706
MspR9I	CCNGG	3 cut(s)	192, 273, 635
MvaI	CCWGG	3 cut(s)	192, 273, 635
MvnI	CGCG	1 cut(s)	649
MwoI	GCNNNNNNNGC	1 cut(s)	655
NcoI	CCATGG	1 cut(s)	102
NdeII	GATC	3 cut(s)	21, 68, 577
NlaIII	CATG	5 cut(s)	67, 106, 401, 408, 701
NlaIV	GGNNCC	1 cut(s)	322
NmuCI	GTSAC	1 cut(s)	484
NruI	TCGCGA	1 cut(s)	649
NspI	RCATGY	1 cut(s)	701
PceI	AGGCCT	2 cut(s)	90, 454
PciSI	GCTCTTC	1 cut(s)	273
PcsI	WCGNNNNNNNCGW	2 cut(s)	156, 168
PflFI	GACNNNGTC	1 cut(s)	35
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	1 cut(s)	605
PpsI	GAGTC	1 cut(s)	605
Ppu21I	YACGTR	1 cut(s)	184
PshAI	GACNNNNGTC	1 cut(s)	482
Psp6I	CCWGG	3 cut(s)	190, 271, 633
PspGI	CCWGG	3 cut(s)	190, 271, 633
PspN4I	GGNNCC	1 cut(s)	322
PspPI	GGNCC	2 cut(s)	37, 60
PstNI	CAGNNNCTG	1 cut(s)	568
PsuI	RGATCY	2 cut(s)	68, 577
PsyI	GACNNNGTC	1 cut(s)	35
RruI	TCGCGA	1 cut(s)	649
RsaI	GTAC	2 cut(s)	96, 687
RsaNI	GTAC	2 cut(s)	95, 686
SalI	GTCGAC	1 cut(s)	506
SapI	GCTCTTC	1 cut(s)	273
SaqAI	TTAA	2 cut(s)	498, 706
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	3 cut(s)	21, 68, 577
Sau96I	GGNCC	2 cut(s)	37, 60
SchI	GAGTC	1 cut(s)	606
ScrFI	CCNGG	3 cut(s)	192, 273, 635
SinI	GGWCC	1 cut(s)	37
SnaBI	TACGTA	1 cut(s)	184
SseBI	AGGCCT	2 cut(s)	90, 454
SsiI	CCGC	1 cut(s)	553
SspMI	CTAG	1 cut(s)	92
StuI	AGGCCT	2 cut(s)	90, 454
StyD4I	CCNGG	3 cut(s)	190, 271, 633
StyI	CCWWGG	2 cut(s)	73, 102
TaaI	ACNGT	2 cut(s)	317, 481
TaiI	ACGT	2 cut(s)	165, 186
TaqI	TCGA	2 cut(s)	56, 507
Tru1I	TTAA	2 cut(s)	498, 706
Tru9I	TTAA	2 cut(s)	498, 706
TseFI	GTSAC	1 cut(s)	484
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	1 cut(s)	484
Tth111I	GACNNNGTC	1 cut(s)	35
VpaK11BI	GGWCC	1 cut(s)	37
XceI	RCATGY	1 cut(s)	701
XmiI	GTMKAC	1 cut(s)	507
XspI	CTAG	1 cut(s)	92
ZraI	GACGTC	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.