Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0012476

Physical Location & Seq

Genomic Coordinates Forward (+)

25266877 .. 25270625

Gene Structure 3749 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0171100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGAATGTAGAAGAAGAGGTCGAGCGTCTCAAAGAAGAAATCAAAAGGCTTGGCAAGGTCCAAGACGATGGTTCTTACAAGGTCACATTTGGTGTGTTATTTAATGATGATAGATGCGCAAACATATTTGAAGCTTTGGTTGGAACACTAAGAGCTGCAAAGAGGCGGAAACTTCTCACATATGAAGGTGAGCTTCTGCTCCAAGGAGTTCATGACAATGTGGAAATCATACTCAAACCCACCCCAGCAGCAGCGACTGAGGTAACTAATGCAGGCGAGAAGAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004592 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006573 GO:0006575 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009081 GO:0009108 GO:0009110 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0015939 GO:0015940 GO:0016053 GO:0016874 GO:0016879 GO:0016881 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0032787 GO:0033317 GO:0034641 GO:0042364 GO:0042398 GO:0042802 GO:0042803 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046983 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051186 GO:0051188 GO:0061458 GO:0071704 GO:0072330 GO:1901564 GO:1901566 GO:1901576 GO:1901605

KEGG Pathways

Metabolic & Signaling

ko00410 ko00770 ko01100 ko01110 map00410 map00770 map01100 map01110

Pfam Domains

Protein Families

Pantoate_ligase

Protein Analysis

95

Amino Acids

10.6

Weight (kDa)

5.2

Isoelectric Point (pI)

41.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Costars	PF14705	2 - 78	4.8e-30	Costars

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Publication-ready

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Orthologous Genes (Group: OG0012476)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48840
fragaria_vesca	FvH4_2g19300
malus_domestica	MD10G1166100.v1.1
prunus_persica	Prupe.8G204600_v2.0.a1 Prupe.8G204600_v2.0.a1
pyrus_communis	pycom10g14330
rosa_chinensis	RchiOBHm_Chr6g0285101
rosa_laevigata	RLG00000012672
rosa_multiflora	Rmu_sc0002535.1_g000036 Rmu_sc0003797.1_g000011
rosa_roxburghii	Rroxscaffold_7G00183530 Rroxscaffold_7G00183670 Rroxscaffold_7G00184030
rosa_rugosa	Rorug06G0171100
rosa_samantha	Rh6AG282300 Rh6BG283000 Rh6CG284900 Rh6DG278000
rosa_wichuraiana	Rw6G024270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	118
AciI	CCGC	1 cut(s)	166
AgsI	TTSAA	1 cut(s)	131
AjuI	GAANNNNNNNTTGG	2 cut(s)	123, 155
AluBI	AGCT	3 cut(s)	134, 155, 193
AluI	AGCT	3 cut(s)	134, 155, 193
Alw26I	GTCTC	1 cut(s)	32
AlwNI	CAGNNNCTG	1 cut(s)	257
ApeKI	GCWGC	3 cut(s)	155, 248, 251
AspLEI	GCGC	1 cut(s)	119
AspS9I	GGNCC	1 cut(s)	58
AsuHPI	GGTGA	1 cut(s)	200
AvaII	GGWCC	1 cut(s)	58
BbvI	GCAGC	3 cut(s)	142, 260, 263
BccI	CCATC	1 cut(s)	62
BcoDI	GTCTC	1 cut(s)	32
BisI	GCNGC	3 cut(s)	156, 249, 252
BlsI	GCNGC	3 cut(s)	157, 250, 253
Bme18I	GGWCC	1 cut(s)	58
BmgT120I	GGNCC	1 cut(s)	58
BmsI	GCATC	1 cut(s)	104
BsaJI	CCNNGG	1 cut(s)	202
BseDI	CCNNGG	1 cut(s)	202
BseMII	CTCAG	1 cut(s)	249
BseXI	GCAGC	3 cut(s)	142, 260, 263
BseYI	CCCAGC	1 cut(s)	244
BsmAI	GTCTC	1 cut(s)	32
BsmBI	CGTCTC	1 cut(s)	32
BspACI	CCGC	1 cut(s)	166
BspCNI	CTCAG	1 cut(s)	250
BspHI	TCATGA	1 cut(s)	211
BssECI	CCNNGG	1 cut(s)	202
BssT1I	CCWWGG	1 cut(s)	202
Bst6I	CTCTTC	2 cut(s)	9, 275
BstC8I	GCNNGC	1 cut(s)	274
BstDEI	CTNAG	2 cut(s)	149, 258
BstHHI	GCGC	1 cut(s)	119
BstMAI	GTCTC	1 cut(s)	32
BstV1I	GCAGC	3 cut(s)	142, 260, 263
BstXI	CCANNNNNNTGG	1 cut(s)	68
Cac8I	GCNNGC	1 cut(s)	274
CaiI	CAGNNNCTG	1 cut(s)	257
CciI	TCATGA	1 cut(s)	211
CfoI	GCGC	1 cut(s)	119
Cfr13I	GGNCC	1 cut(s)	58
CseI	GACGC	1 cut(s)	14
CviAII	CATG	1 cut(s)	212
CviJI	RGCY	4 cut(s)	49, 134, 155, 193
CviKI_1	RGCY	4 cut(s)	49, 134, 155, 193
DdeI	CTNAG	2 cut(s)	149, 258
Eam1104I	CTCTTC	2 cut(s)	9, 275
EarI	CTCTTC	2 cut(s)	9, 275
EciI	GGCGGA	1 cut(s)	181
Eco130I	CCWWGG	1 cut(s)	202
Eco47I	GGWCC	1 cut(s)	58
EcoT14I	CCWWGG	1 cut(s)	202
ErhI	CCWWGG	1 cut(s)	202
Esp3I	CGTCTC	1 cut(s)	32
FaeI	CATG	1 cut(s)	215
FaiI	YATR	5 cut(s)	125, 181, 183, 213, 230
FalI	AAGNNNNNCTT	2 cut(s)	177, 209
FatI	CATG	1 cut(s)	211
FauNDI	CATATG	1 cut(s)	181
Fnu4HI	GCNGC	3 cut(s)	156, 249, 252
Fsp4HI	GCNGC	3 cut(s)	156, 249, 252
FspI	TGCGCA	1 cut(s)	118
GlaI	GCGC	1 cut(s)	118
GluI	GCNGC	3 cut(s)	156, 249, 252
GsaI	CCCAGC	1 cut(s)	248
HgaI	GACGC	1 cut(s)	14
HhaI	GCGC	1 cut(s)	119
Hin1II	CATG	1 cut(s)	215
Hin6I	GCGC	1 cut(s)	117
HinP1I	GCGC	1 cut(s)	117
HindIII	AAGCTT	1 cut(s)	132
HphI	GGTGA	1 cut(s)	200
Hpy188III	TCNNGA	1 cut(s)	212
HpyAV	CCTTC	1 cut(s)	179
HpyCH4V	TGCA	2 cut(s)	158, 272
HpyF3I	CTNAG	2 cut(s)	149, 258
Hsp92II	CATG	1 cut(s)	215
HspAI	GCGC	1 cut(s)	117
LmnI	GCTCC	1 cut(s)	204
LpnPI	CCDG	2 cut(s)	258, 258
Lsp1109I	GCAGC	3 cut(s)	142, 260, 263
LweI	GCATC	1 cut(s)	104
MaeIII	GTNAC	2 cut(s)	82, 262
MboII	GAAGA	3 cut(s)	23, 26, 47
MmeI	TCCRAC	1 cut(s)	121
MnlI	CCTC	3 cut(s)	10, 156, 253
MseI	TTAA	1 cut(s)	102
MslI	CAYNNNNRTG	1 cut(s)	216
NdeI	CATATG	1 cut(s)	181
NlaIII	CATG	1 cut(s)	215
NmuCI	GTSAC	1 cut(s)	82
NsbI	TGCGCA	1 cut(s)	118
PagI	TCATGA	1 cut(s)	211
PkrI	GCNGC	3 cut(s)	157, 250, 253
PspFI	CCCAGC	1 cut(s)	244
PspPI	GGNCC	1 cut(s)	58
PstNI	CAGNNNCTG	1 cut(s)	257
RseI	CAYNNNNRTG	1 cut(s)	216
SaqAI	TTAA	1 cut(s)	102
SatI	GCNGC	3 cut(s)	156, 249, 252
Sau96I	GGNCC	1 cut(s)	58
SetI	ASST	8 cut(s)	21, 60, 84, 136, 157, 190, 195, 264
SfaNI	GCATC	1 cut(s)	104
SgeI	CNNG	8 cut(s)	34, 62, 67, 74, 91, 215, 224, 257
SinI	GGWCC	1 cut(s)	58
SmiMI	CAYNNNNRTG	1 cut(s)	216
SsiI	CCGC	1 cut(s)	166
StyI	CCWWGG	1 cut(s)	202
TaqI	TCGA	1 cut(s)	21
Tru1I	TTAA	1 cut(s)	102
Tru9I	TTAA	1 cut(s)	102
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	3 cut(s)	155, 248, 251
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	3 cut(s)	17, 198, 200
VpaK11BI	GGWCC	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.