Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0012476

Physical Location & Seq

Genomic Coordinates Forward (+)

22738289 .. 22741834

Gene Structure 3546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00183670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGGCAGCCAAAGAACCAGAGATCATCAGAGACAAGGACCAGATGAGGAATTGGTCGAGGGCCATGAGATCCCAAGGCAAAACCATAGGCCTAGTACCCACCATGGGCTACCTCCACGACGGCCACCTTTCCCTCATCAGAGAAGCCCACGACCACTCCGACGTCATCGTCGTCTCCATCTACGTAAACCCAGGTCAGTTCTCTCCCACCGAAGACCTCTCCACATACCCATCTGATTTCCACGGCGATATCCAAAAGTTGAAGGCTGTTCCTGGTGGCGTTGATGTTGTTTTCAATCCTCACAATCTCTACGATTATGGAACCAACAGAAGGACGTCGGTGAGTAATGGTGAAGGGGCAAAATCGGTTTCTTGTGTGGAGGAGAAGGGGTTGGGGCATGAGACATGGGTTAGAGTTGAGACATTGGAGAAGGGTATGTGTGGCAAGACTAGGCCTGTGTTTTTCAGAGGGGTTGCGACTGTTGTCACCAAGTTGTTTAACATAGTCGACCCTGATGTTGCTCTGTTTGGGAAGAAGGATTTTCAGCAATGGCGGATTATTCAGCGACTGGTTCGGGATCTTGATTTTTCCATTAGAGTCGTTGGTTCTGAGGTAGTGCGTGAAAACGATGGCCTGGCAATGAGTTCGCGAAATGTGCGCCTCTCACCTGAAGAACGGGAAAAGGCACTGTCTATAAACAAGTCACTGTCGAGAGCTAGGTTTTCTGCAGAAAAGGGTCTAATTAGATGTAAAGAATTAACAAATTCAGTCATCCAAGCGATTAATGAAGCTGGCGGAAGGGTTGATTATGCAGAGATTGTAGACCAAGAAAGTCTGGAGCCAGTTGAAGAAATAAGAAGTCCTGTTGTGTTCTGTGTTGCTGCTTGGTTTGGAAAGAAAGAGGGCAAACTGCATTTTGCTATCATGTACAACACCTTCAATATTAATCCACTCTTGGCTTTTTTTCGTCTTAAACAAGAGACATTTTATGGTCAGCAGAGTAAAGAGGTGAACTACTGCCAGCAATTTGTTATCATCTTGGCAAGGAAACTCCTGACACCTCTAGGTTGGTTTTTCAAGGGTGGAAAAGGTGATGTCCAGAACGTTATTCCGGGGTTTGATACCCCCCGTCAATCAGTGGATCTAAGAGATGAAGGAGGTTTTCCAGACGAAGCCTTTGATTTGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004592 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006573 GO:0006575 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009081 GO:0009108 GO:0009110 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0015939 GO:0015940 GO:0016053 GO:0016874 GO:0016879 GO:0016881 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0032787 GO:0033317 GO:0034641 GO:0042364 GO:0042398 GO:0042802 GO:0042803 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046983 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051186 GO:0051188 GO:0061458 GO:0071704 GO:0072330 GO:1901564 GO:1901566 GO:1901576 GO:1901605

KEGG Pathways

Metabolic & Signaling

ko00410 ko00770 ko01100 ko01110 map00410 map00770 map01100 map01110

Pfam Domains

Protein Families

Pantoate_ligase

Protein Analysis

396

Amino Acids

44.58

Weight (kDa)

6.73

Isoelectric Point (pI)

34.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pantoate_ligase	PF02569	8 - 299	5.2e-92	Pantoate-beta-alanine ligase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012476)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48840
fragaria_vesca	FvH4_2g19300
malus_domestica	MD10G1166100.v1.1
prunus_persica	Prupe.8G204600_v2.0.a1 Prupe.8G204600_v2.0.a1
pyrus_communis	pycom10g14330
rosa_chinensis	RchiOBHm_Chr6g0285101
rosa_laevigata	RLG00000012672
rosa_multiflora	Rmu_sc0002535.1_g000036 Rmu_sc0003797.1_g000011
rosa_roxburghii	Rroxscaffold_7G00183530 Rroxscaffold_7G00183670 Rroxscaffold_7G00184030
rosa_rugosa	Rorug06G0171100
rosa_samantha	Rh6AG282300 Rh6BG283000 Rh6CG284900 Rh6DG278000
rosa_wichuraiana	Rw6G024270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	167
AatII	GACGTC	2 cut(s)	165, 338
AccI	GTMKAC	2 cut(s)	507, 822
AccII	CGCG	1 cut(s)	649
AciI	CCGC	2 cut(s)	553, 795
AclI	AACGTT	1 cut(s)	1104
AclWI	GGATC	3 cut(s)	63, 585, 1149
AcoI	YGGCCR	1 cut(s)	121
AcsI	RAATTY	1 cut(s)	763
AcuI	CTGAAG	1 cut(s)	690
AcyI	GRCGYC	2 cut(s)	162, 335
AfaI	GTAC	2 cut(s)	96, 929
AfiI	CCNNNNNNNGG	2 cut(s)	104, 330
AgsI	TTSAA	5 cut(s)	262, 295, 848, 940, 1078
AjnI	CCWGG	3 cut(s)	190, 271, 633
AluBI	AGCT	2 cut(s)	716, 791
AluI	AGCT	2 cut(s)	716, 791
Alw26I	GTCTC	5 cut(s)	24, 178, 395, 413, 974
AlwI	GGATC	3 cut(s)	63, 585, 1149
AlwNI	CAGNNNCTG	1 cut(s)	568
AoxI	GGCC	5 cut(s)	60, 88, 121, 452, 631
ApeKI	GCWGC	2 cut(s)	5, 881
ApoI	RAATTY	1 cut(s)	763
ArsI	GACNNNNNNTTYG	1 cut(s)	1160
AseI	ATTAAT	2 cut(s)	783, 945
AspLEI	GCGC	1 cut(s)	660
AspS9I	GGNCC	2 cut(s)	37, 60
AsuC2I	CCSGG	1 cut(s)	1113
AsuHPI	GGTGA	6 cut(s)	352, 362, 478, 657, 1021, 1103
AvaII	GGWCC	1 cut(s)	37
BarI	GAAGNNNNNNTAC	2 cut(s)	920, 952
BbsI	GAAGAC	1 cut(s)	219
BbvI	GCAGC	2 cut(s)	17, 868
BccI	CCATC	3 cut(s)	185, 238, 623
BceAI	ACGGC	2 cut(s)	136, 259
BcgI	CGANNNNNNTGC	2 cut(s)	627, 661
BciT130I	CCWGG	3 cut(s)	192, 273, 635
BcnI	CCSGG	1 cut(s)	1113
BcoDI	GTCTC	5 cut(s)	24, 178, 395, 413, 974
BfaI	CTAG	4 cut(s)	92, 450, 717, 1064
BfmI	CTRYAG	1 cut(s)	726
BisI	GCNGC	2 cut(s)	6, 882
BlsI	GCNGC	2 cut(s)	7, 883
Bme1390I	CCNGG	4 cut(s)	192, 273, 635, 1113
Bme18I	GGWCC	1 cut(s)	37
BmgT120I	GGNCC	2 cut(s)	37, 60
BmiI	GGNNCC	2 cut(s)	322, 840
BmrFI	CCNGG	4 cut(s)	192, 273, 635, 1113
BoxI	GACNNNNGTC	1 cut(s)	482
BpiI	GAAGAC	1 cut(s)	219
BpmI	CTGGAG	1 cut(s)	857
BpuMI	CCSGG	1 cut(s)	1113
BsaAI	YACGTR	1 cut(s)	184
BsaHI	GRCGYC	2 cut(s)	162, 335
BsaJI	CCNNGG	5 cut(s)	73, 102, 190, 241, 1112
BsaXI	ACNNNNNCTCC	4 cut(s)	140, 170, 374, 404
Bsc4I	CCNNNNNNNGG	2 cut(s)	104, 330
Bse1I	ACTGG	2 cut(s)	573, 842
Bse3DI	GCAATG	2 cut(s)	554, 645
BseBI	CCWGG	3 cut(s)	192, 273, 635
BseDI	CCNNGG	5 cut(s)	73, 102, 190, 241, 1112
BseGI	GGATG	1 cut(s)	771
BseLI	CCNNNNNNNGG	2 cut(s)	104, 330
BseMI	GCAATG	2 cut(s)	554, 645
BseMII	CTCAG	1 cut(s)	600
BseNI	ACTGG	2 cut(s)	573, 842
BseRI	GAGGAG	1 cut(s)	395
BseXI	GCAGC	2 cut(s)	17, 868
Bsh1236I	CGCG	1 cut(s)	649
BshFI	GGCC	5 cut(s)	62, 90, 123, 454, 633
BsiSI	CCGG	1 cut(s)	1112
BslI	CCNNNNNNNGG	2 cut(s)	104, 330
BsmAI	GTCTC	5 cut(s)	24, 178, 395, 413, 974
BsmBI	CGTCTC	1 cut(s)	178
BsnI	GGCC	5 cut(s)	62, 90, 123, 454, 633
Bsp1407I	TGTACA	1 cut(s)	927
Bsp143I	GATC	4 cut(s)	21, 68, 577, 1141
Bsp19I	CCATGG	1 cut(s)	102
Bsp68I	TCGCGA	1 cut(s)	649
BspACI	CCGC	2 cut(s)	553, 795
BspANI	GGCC	5 cut(s)	62, 90, 123, 454, 633
BspCNI	CTCAG	1 cut(s)	601
BspFNI	CGCG	1 cut(s)	649
BspLI	GGNNCC	2 cut(s)	322, 840
BspMAI	CTGCAG	1 cut(s)	730
BspPI	GGATC	3 cut(s)	63, 585, 1149
BsrDI	GCAATG	2 cut(s)	554, 645
BsrGI	TGTACA	1 cut(s)	927
BsrI	ACTGG	2 cut(s)	573, 842
BssECI	CCNNGG	5 cut(s)	73, 102, 190, 241, 1112
BssMI	GATC	4 cut(s)	21, 68, 577, 1141
BssNI	GRCGYC	2 cut(s)	162, 335
BssT1I	CCWWGG	2 cut(s)	73, 102
Bst2UI	CCWGG	3 cut(s)	192, 273, 635
Bst4CI	ACNGT	3 cut(s)	481, 690, 708
BstACI	GRCGYC	2 cut(s)	162, 335
BstAUI	TGTACA	1 cut(s)	927
BstBAI	YACGTR	1 cut(s)	184
BstC8I	GCNNGC	2 cut(s)	793, 1022
BstDEI	CTNAG	2 cut(s)	609, 1145
BstDSI	CCRYGG	2 cut(s)	102, 241
BstF5I	GGATG	1 cut(s)	771
BstFNI	CGCG	1 cut(s)	649
BstHHI	GCGC	1 cut(s)	660
BstKTI	GATC	4 cut(s)	24, 71, 580, 1144
BstMAI	GTCTC	5 cut(s)	24, 178, 395, 413, 974
BstMBI	GATC	4 cut(s)	21, 68, 577, 1141
BstMWI	GCNNNNNNNGC	1 cut(s)	655
BstNI	CCWGG	3 cut(s)	192, 273, 635
BstPAI	GACNNNNGTC	1 cut(s)	482
BstSCI	CCNGG	4 cut(s)	190, 271, 633, 1111
BstSFI	CTRYAG	1 cut(s)	726
BstSNI	TACGTA	1 cut(s)	184
BstUI	CGCG	1 cut(s)	649
BstV1I	GCAGC	2 cut(s)	17, 868
BstV2I	GAAGAC	1 cut(s)	219
BstX2I	RGATCY	3 cut(s)	68, 577, 1141
BstYI	RGATCY	3 cut(s)	68, 577, 1141
BsuRI	GGCC	5 cut(s)	62, 90, 123, 454, 633
BtgI	CCRYGG	2 cut(s)	102, 241
BtsCI	GGATG	1 cut(s)	771
BtsIMutI	CAGTG	3 cut(s)	686, 704, 1143
BtuMI	TCGCGA	1 cut(s)	649
Cac8I	GCNNGC	2 cut(s)	793, 1022
CaiI	CAGNNNCTG	1 cut(s)	568
CfoI	GCGC	1 cut(s)	660
Cfr13I	GGNCC	2 cut(s)	37, 60
Csp6I	GTAC	2 cut(s)	95, 928
CviAII	CATG	5 cut(s)	64, 103, 398, 405, 925
CviQI	GTAC	2 cut(s)	95, 928
DdeI	CTNAG	2 cut(s)	609, 1145
DpnI	GATC	4 cut(s)	23, 70, 579, 1143
DpnII	GATC	4 cut(s)	21, 68, 577, 1141
DrdI	GACNNNNNNGTC	1 cut(s)	167
DseDI	GACNNNNNNGTC	1 cut(s)	167
EaeI	YGGCCR	1 cut(s)	121
EciI	GGCGGA	2 cut(s)	568, 810
Eco105I	TACGTA	1 cut(s)	184
Eco130I	CCWWGG	2 cut(s)	73, 102
Eco147I	AGGCCT	2 cut(s)	90, 454
Eco32I	GATATC	1 cut(s)	250
Eco47I	GGWCC	1 cut(s)	37
Eco57I	CTGAAG	1 cut(s)	690
EcoRII	CCWGG	3 cut(s)	190, 271, 633
EcoRV	GATATC	1 cut(s)	250
EcoT14I	CCWWGG	2 cut(s)	73, 102
ErhI	CCWWGG	2 cut(s)	73, 102
Esp3I	CGTCTC	1 cut(s)	178
FaeI	CATG	5 cut(s)	67, 106, 401, 408, 928
FatI	CATG	5 cut(s)	63, 102, 397, 404, 924
FblI	GTMKAC	2 cut(s)	507, 822
Fnu4HI	GCNGC	2 cut(s)	6, 882
FokI	GGATG	1 cut(s)	758
Fsp4HI	GCNGC	2 cut(s)	6, 882
FspBI	CTAG	4 cut(s)	92, 450, 717, 1064
GlaI	GCGC	1 cut(s)	659
GluI	GCNGC	2 cut(s)	6, 882
GsuI	CTGGAG	1 cut(s)	857
HaeIII	GGCC	5 cut(s)	62, 90, 123, 454, 633
HapII	CCGG	1 cut(s)	1112
HhaI	GCGC	1 cut(s)	660
Hin1I	GRCGYC	2 cut(s)	162, 335
Hin1II	CATG	5 cut(s)	67, 106, 401, 408, 928
Hin6I	GCGC	1 cut(s)	658
HinP1I	GCGC	1 cut(s)	658
HincII	GTYRAC	1 cut(s)	508
HindII	GTYRAC	1 cut(s)	508
HinfI	GANTC	1 cut(s)	597
HpaII	CCGG	1 cut(s)	1112
HphI	GGTGA	6 cut(s)	352, 362, 478, 657, 1021, 1103
Hpy166II	GTNNAC	4 cut(s)	187, 508, 823, 1012
Hpy188I	TCNGA	6 cut(s)	29, 140, 160, 235, 467, 610
Hpy188III	TCNNGA	8 cut(s)	575, 581, 648, 711, 836, 1054, 1099, 1166
Hpy8I	GTNNAC	4 cut(s)	187, 508, 823, 1012
Hpy99I	CGWCG	4 cut(s)	122, 164, 173, 340
HpyAV	CCTTC	9 cut(s)	256, 324, 347, 379, 424, 529, 792, 946, 1148
HpyCH4III	ACNGT	3 cut(s)	481, 690, 708
HpyCH4IV	ACGT	4 cut(s)	162, 183, 335, 1104
HpyCH4V	TGCA	3 cut(s)	728, 812, 913
HpyF10VI	GCNNNNNNNGC	1 cut(s)	655
HpyF3I	CTNAG	2 cut(s)	609, 1145
HpySE526I	ACGT	4 cut(s)	162, 183, 335, 1104
Hsp92I	GRCGYC	2 cut(s)	162, 335
Hsp92II	CATG	5 cut(s)	67, 106, 401, 408, 928
HspAI	GCGC	1 cut(s)	658
Kzo9I	GATC	4 cut(s)	21, 68, 577, 1141
LmnI	GCTCC	1 cut(s)	838
Lsp1109I	GCAGC	2 cut(s)	17, 868
MaeI	CTAG	4 cut(s)	92, 450, 717, 1064
MaeII	ACGT	4 cut(s)	162, 183, 335, 1104
MaeIII	GTNAC	2 cut(s)	484, 702
MalI	GATC	4 cut(s)	23, 70, 579, 1143
MboI	GATC	4 cut(s)	21, 68, 577, 1141
MboII	GAAGA	4 cut(s)	224, 544, 683, 860
MflI	RGATCY	3 cut(s)	68, 577, 1141
MluCI	AATT	5 cut(s)	49, 741, 755, 763, 1025
MlyI	GAGTC	1 cut(s)	606
MmeI	TCCRAC	1 cut(s)	183
MseI	TTAA	5 cut(s)	498, 758, 783, 945, 972
MspI	CCGG	1 cut(s)	1112
MspR9I	CCNGG	4 cut(s)	192, 273, 635, 1113
MvaI	CCWGG	3 cut(s)	192, 273, 635
MvnI	CGCG	1 cut(s)	649
MwoI	GCNNNNNNNGC	1 cut(s)	655
NciI	CCSGG	1 cut(s)	1113
NcoI	CCATGG	1 cut(s)	102
NdeII	GATC	4 cut(s)	21, 68, 577, 1141
NlaIII	CATG	5 cut(s)	67, 106, 401, 408, 928
NlaIV	GGNNCC	2 cut(s)	322, 840
NmuCI	GTSAC	2 cut(s)	484, 702
NruI	TCGCGA	1 cut(s)	649
PceI	AGGCCT	2 cut(s)	90, 454
PcsI	WCGNNNNNNNCGW	2 cut(s)	156, 168
PkrI	GCNGC	2 cut(s)	7, 883
PleI	GAGTC	1 cut(s)	605
PpsI	GAGTC	1 cut(s)	605
Ppu21I	YACGTR	1 cut(s)	184
PshAI	GACNNNNGTC	1 cut(s)	482
PshBI	ATTAAT	2 cut(s)	783, 945
Psp1406I	AACGTT	1 cut(s)	1104
Psp6I	CCWGG	3 cut(s)	190, 271, 633
PspGI	CCWGG	3 cut(s)	190, 271, 633
PspN4I	GGNNCC	2 cut(s)	322, 840
PspPI	GGNCC	2 cut(s)	37, 60
PstI	CTGCAG	1 cut(s)	730
PstNI	CAGNNNCTG	1 cut(s)	568
PsuI	RGATCY	3 cut(s)	68, 577, 1141
RruI	TCGCGA	1 cut(s)	649
RsaI	GTAC	2 cut(s)	96, 929
RsaNI	GTAC	2 cut(s)	95, 928
SalI	GTCGAC	1 cut(s)	506
SaqAI	TTAA	5 cut(s)	498, 758, 783, 945, 972
SatI	GCNGC	2 cut(s)	6, 882
Sau3AI	GATC	4 cut(s)	21, 68, 577, 1141
Sau96I	GGNCC	2 cut(s)	37, 60
SchI	GAGTC	1 cut(s)	606
ScrFI	CCNGG	4 cut(s)	192, 273, 635, 1113
SfcI	CTRYAG	1 cut(s)	726
SinI	GGWCC	1 cut(s)	37
SnaBI	TACGTA	1 cut(s)	184
Sse9I	AATT	5 cut(s)	49, 741, 755, 763, 1025
SseBI	AGGCCT	2 cut(s)	90, 454
SsiI	CCGC	2 cut(s)	553, 795
SspI	AATATT	1 cut(s)	943
SspMI	CTAG	4 cut(s)	92, 450, 717, 1064
StuI	AGGCCT	2 cut(s)	90, 454
StyD4I	CCNGG	4 cut(s)	190, 271, 633, 1111
StyI	CCWWGG	2 cut(s)	73, 102
TaaI	ACNGT	3 cut(s)	481, 690, 708
TaiI	ACGT	4 cut(s)	165, 186, 338, 1107
TaqI	TCGA	3 cut(s)	56, 507, 710
TasI	AATT	5 cut(s)	49, 741, 755, 763, 1025
TatI	WGTACW	1 cut(s)	927
Tru1I	TTAA	5 cut(s)	498, 758, 783, 945, 972
Tru9I	TTAA	5 cut(s)	498, 758, 783, 945, 972
TscAI	CASTG	3 cut(s)	693, 711, 1143
TseFI	GTSAC	2 cut(s)	484, 702
TseI	GCWGC	2 cut(s)	5, 881
Tsp45I	GTSAC	2 cut(s)	484, 702
TspDTI	ATGAA	2 cut(s)	801, 1167
TspRI	CASTG	3 cut(s)	693, 711, 1143
VpaK11BI	GGWCC	1 cut(s)	37
VspI	ATTAAT	2 cut(s)	783, 945
XapI	RAATTY	1 cut(s)	763
XmiI	GTMKAC	2 cut(s)	507, 822
XspI	CTAG	4 cut(s)	92, 450, 717, 1064
ZraI	GACGTC	2 cut(s)	163, 336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.