Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0012476

Physical Location & Seq

Genomic Coordinates Reverse (-)

25661121 .. 25663190

Gene Structure 2070 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1166100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGCGGCCAAACAACCAGAGATTATCAGGGACAAGGACCAGATGAGGAGGTGGTCACGCGCCATGAGAGCCCAAGGCAAGACCATCGGATTAGTACCCACAATGGGCTACCTCCACGAAGGACACGTTTCCCTCATCCGAGAAGCCCGCACCCATGCCGACGTCCTCGCCGTCTCGATCTACGTGAACCCGGGTCAGTTCGCCCCCTCCGAAGACCTCTCCACATACCCGTCCGATTTCCACGGCGACATCCGGAAGCTCGCCCAAATTCCCGGCGGCGTCGACGTCGTATTCAACCCCCACAACCTGTACGACTACGGAGGAAGCACGGACGCAAGCGCACGTGCGAGGAATGGGGCGGTTGAGAGCGGCTGCGGCGAAACGGTGTCGTGCTTGGAGGACAAGGGGGTGGGGCACGAGACGTGGGTTAGGGTCGAGAGGTTGGAGAAGGGGATGTGCGGGCGGAGCAGGCCGGTGTTTTTCAGAGGGGTTACGACGGTTGTGAGCAAGCTGTTTAATATCGTGGAGCCTGATGTTGCGGTGTTTGGGAAGAAGGATTATCAACAATGGCGGATAATTCAGCGGATGGTTCGAGATCTTGATTTTTCCGTTAGAGTGATAGGTTCTGAAATAGTGCGAGAACACGATGGCCTGGCAATGAGTTCACGCAATGTGCGCCTCTCACCTGAAGAACGGGAAAAGGCACTGTCTATAAGCAAGTCATTGTCAGAAGCTAGATCTTCTGCAGAAAAGGGACAAGTTAATTGTAAAGAGTTGAGAGACTTGGTCATCCAAGCGATTAGTGAAGCCGGTGGAAGAGTCGATTATGCTGAGATTGTCGACCAGGAAAGCTTGGAGTCGGCAGAAGAGATCAGAAGGCCTGTCGTGTTCTGCGTCGCTGCCTGGTTTGGAAAGGTTCGACTGATCGACAACATGGAGATCAACATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004592 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006573 GO:0006575 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009081 GO:0009108 GO:0009110 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0015939 GO:0015940 GO:0016053 GO:0016874 GO:0016879 GO:0016881 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0032787 GO:0033317 GO:0034641 GO:0042364 GO:0042398 GO:0042802 GO:0042803 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046983 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051186 GO:0051188 GO:0061458 GO:0071704 GO:0072330 GO:1901564 GO:1901566 GO:1901576 GO:1901605

KEGG Pathways

Metabolic & Signaling

ko00410 ko00770 ko01100 ko01110 map00410 map00770 map01100 map01110

Pfam Domains

Protein Families

Pantoate_ligase

Protein Analysis

317

Amino Acids

35.26

Weight (kDa)

6.42

Isoelectric Point (pI)

42.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pantoate_ligase	PF02569	8 - 312	1.5e-98	Pantoate-beta-alanine ligase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012476)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48840
fragaria_vesca	FvH4_2g19300
malus_domestica	MD10G1166100.v1.1
prunus_persica	Prupe.8G204600_v2.0.a1 Prupe.8G204600_v2.0.a1
pyrus_communis	pycom10g14330
rosa_chinensis	RchiOBHm_Chr6g0285101
rosa_laevigata	RLG00000012672
rosa_multiflora	Rmu_sc0002535.1_g000036 Rmu_sc0003797.1_g000011
rosa_roxburghii	Rroxscaffold_7G00183530 Rroxscaffold_7G00183670 Rroxscaffold_7G00184030
rosa_rugosa	Rorug06G0171100
rosa_samantha	Rh6AG282300 Rh6BG283000 Rh6CG284900 Rh6DG278000
rosa_wichuraiana	Rw6G024270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	165, 288
AccBSI	CCGCTC	1 cut(s)	369
AccI	GTMKAC	2 cut(s)	282, 840
AccII	CGCG	1 cut(s)	60
AccIII	TCCGGA	1 cut(s)	252
AcoI	YGGCCR	1 cut(s)	6
AcsI	RAATTY	1 cut(s)	267
AcuI	CTGAAG	1 cut(s)	708
AcvI	CACGTG	1 cut(s)	344
AcyI	GRCGYC	3 cut(s)	162, 279, 285
AfaI	GTAC	2 cut(s)	96, 311
AfiI	CCNNNNNNNGG	1 cut(s)	104
AflIII	ACRYGT	1 cut(s)	124
AgsI	TTSAA	1 cut(s)	295
AjiI	CACGTC	1 cut(s)	423
AjnI	CCWGG	3 cut(s)	651, 843, 902
AluBI	AGCT	4 cut(s)	259, 511, 734, 852
AluI	AGCT	4 cut(s)	259, 511, 734, 852
Alw26I	GTCTC	3 cut(s)	178, 413, 774
Ama87I	CYCGRG	1 cut(s)	190
Aor13HI	TCCGGA	1 cut(s)	252
AoxI	GGCC	4 cut(s)	6, 470, 649, 878
ApeKI	GCWGC	2 cut(s)	372, 899
ApoI	RAATTY	1 cut(s)	267
AspLEI	GCGC	3 cut(s)	62, 341, 678
AspS9I	GGNCC	1 cut(s)	37
AsuC2I	CCSGG	3 cut(s)	191, 192, 273
AsuHPI	GGTGA	1 cut(s)	675
AvaI	CYCGRG	1 cut(s)	190
AvaII	GGWCC	1 cut(s)	37
BaeGI	GKGCMC	1 cut(s)	417
BanII	GRGCYC	1 cut(s)	73
BauI	CACGAG	1 cut(s)	416
BbrPI	CACGTG	1 cut(s)	344
BbsI	GAAGAC	1 cut(s)	219
BbvI	GCAGC	2 cut(s)	359, 886
BccI	CCATC	3 cut(s)	92, 580, 641
BceAI	ACGGC	2 cut(s)	155, 259
BcgI	CGANNNNNNTGC	2 cut(s)	67, 101
BciT130I	CCWGG	3 cut(s)	653, 845, 904
BcnI	CCSGG	3 cut(s)	191, 192, 273
BcoDI	GTCTC	3 cut(s)	178, 413, 774
BfaI	CTAG	1 cut(s)	735
BfmI	CTRYAG	1 cut(s)	744
BglII	AGATCT	2 cut(s)	595, 737
BisI	GCNGC	6 cut(s)	6, 277, 370, 373, 376, 900
BlsI	GCNGC	6 cut(s)	7, 278, 371, 374, 377, 901
Bme1390I	CCNGG	6 cut(s)	191, 192, 273, 653, 845, 904
Bme18I	GGWCC	1 cut(s)	37
BmeT110I	CYCGRG	1 cut(s)	190
BmgBI	CACGTC	1 cut(s)	423
BmgT120I	GGNCC	1 cut(s)	37
BmiI	GGNNCC	1 cut(s)	528
BmrFI	CCNGG	6 cut(s)	191, 192, 273, 653, 845, 904
BpiI	GAAGAC	1 cut(s)	219
BpuMI	CCSGG	3 cut(s)	191, 192, 273
BsaAI	YACGTR	2 cut(s)	184, 344
BsaHI	GRCGYC	3 cut(s)	162, 279, 285
BsaJI	CCNNGG	3 cut(s)	73, 190, 241
BsaWI	WCCGGW	1 cut(s)	252
Bsc4I	CCNNNNNNNGG	1 cut(s)	104
Bse118I	RCCGGY	2 cut(s)	472, 809
Bse3DI	GCAATG	2 cut(s)	663, 676
BseAI	TCCGGA	1 cut(s)	252
BseBI	CCWGG	3 cut(s)	653, 845, 904
BseDI	CCNNGG	3 cut(s)	73, 190, 241
BseGI	GGATG	5 cut(s)	135, 249, 459, 591, 789
BseLI	CCNNNNNNNGG	1 cut(s)	104
BseMI	GCAATG	2 cut(s)	663, 676
BseMII	CTCAG	1 cut(s)	822
BseRI	GAGGAG	1 cut(s)	61
BseSI	GKGCMC	1 cut(s)	417
BseXI	GCAGC	2 cut(s)	359, 886
Bsh1236I	CGCG	1 cut(s)	60
BshFI	GGCC	4 cut(s)	8, 472, 651, 880
BsiHKCI	CYCGRG	1 cut(s)	190
BsiSI	CCGG	5 cut(s)	191, 253, 273, 473, 810
BslFI	GGGAC	2 cut(s)	44, 768
BslI	CCNNNNNNNGG	1 cut(s)	104
BsmAI	GTCTC	3 cut(s)	178, 413, 774
BsmBI	CGTCTC	2 cut(s)	178, 413
BsmFI	GGGAC	2 cut(s)	44, 768
BsnI	GGCC	4 cut(s)	8, 472, 651, 880
BsoBI	CYCGRG	1 cut(s)	190
Bsp1286I	GDGCHC	2 cut(s)	73, 417
Bsp13I	TCCGGA	1 cut(s)	252
Bsp143I	GATC	6 cut(s)	177, 595, 737, 870, 924, 939
BspANI	GGCC	4 cut(s)	8, 472, 651, 880
BspCNI	CTCAG	1 cut(s)	823
BspEI	TCCGGA	1 cut(s)	252
BspFNI	CGCG	1 cut(s)	60
BspLI	GGNNCC	1 cut(s)	528
BspMAI	CTGCAG	1 cut(s)	748
BsrBI	CCGCTC	1 cut(s)	369
BsrDI	GCAATG	2 cut(s)	663, 676
BsrFI	RCCGGY	2 cut(s)	472, 809
BssAI	RCCGGY	2 cut(s)	472, 809
BssECI	CCNNGG	3 cut(s)	73, 190, 241
BssMI	GATC	6 cut(s)	177, 595, 737, 870, 924, 939
BssNI	GRCGYC	3 cut(s)	162, 279, 285
BssSI	CACGAG	1 cut(s)	416
BssT1I	CCWWGG	1 cut(s)	73
Bst2BI	CACGAG	1 cut(s)	416
Bst2UI	CCWGG	3 cut(s)	653, 845, 904
Bst4CI	ACNGT	3 cut(s)	385, 499, 708
Bst6I	CTCTTC	2 cut(s)	811, 861
BstACI	GRCGYC	3 cut(s)	162, 279, 285
BstBAI	YACGTR	2 cut(s)	184, 344
BstC8I	GCNNGC	6 cut(s)	148, 261, 337, 461, 470, 509
BstDEI	CTNAG	1 cut(s)	831
BstDSI	CCRYGG	1 cut(s)	241
BstF5I	GGATG	5 cut(s)	135, 249, 459, 591, 789
BstFNI	CGCG	1 cut(s)	60
BstHHI	GCGC	3 cut(s)	62, 341, 678
BstKTI	GATC	6 cut(s)	180, 598, 740, 873, 927, 942
BstMAI	GTCTC	3 cut(s)	178, 413, 774
BstMBI	GATC	6 cut(s)	177, 595, 737, 870, 924, 939
BstMWI	GCNNNNNNNGC	5 cut(s)	68, 375, 465, 469, 675
BstNI	CCWGG	3 cut(s)	653, 845, 904
BstSCI	CCNGG	6 cut(s)	189, 190, 271, 651, 843, 902
BstSFI	CTRYAG	1 cut(s)	744
BstSLI	GKGCMC	1 cut(s)	417
BstUI	CGCG	1 cut(s)	60
BstV1I	GCAGC	2 cut(s)	359, 886
BstV2I	GAAGAC	1 cut(s)	219
BstX2I	RGATCY	2 cut(s)	595, 737
BstYI	RGATCY	2 cut(s)	595, 737
BsuRI	GGCC	4 cut(s)	8, 472, 651, 880
BtgI	CCRYGG	1 cut(s)	241
BtrI	CACGTC	1 cut(s)	423
BtsCI	GGATG	5 cut(s)	135, 249, 459, 591, 789
BtsIMutI	CAGTG	1 cut(s)	704
Cac8I	GCNNGC	6 cut(s)	148, 261, 337, 461, 470, 509
CfoI	GCGC	3 cut(s)	62, 341, 678
Cfr10I	RCCGGY	2 cut(s)	472, 809
Cfr13I	GGNCC	1 cut(s)	37
Cfr9I	CCCGGG	1 cut(s)	190
CseI	GACGC	3 cut(s)	268, 341, 883
Csp6I	GTAC	2 cut(s)	95, 310
CviAII	CATG	3 cut(s)	64, 155, 934
CviQI	GTAC	2 cut(s)	95, 310
DdeI	CTNAG	1 cut(s)	831
DpnI	GATC	6 cut(s)	179, 597, 739, 872, 926, 941
DpnII	GATC	6 cut(s)	177, 595, 737, 870, 924, 939
EaeI	YGGCCR	1 cut(s)	6
Eam1104I	CTCTTC	2 cut(s)	811, 861
EarI	CTCTTC	2 cut(s)	811, 861
EciI	GGCGGA	2 cut(s)	478, 586
Eco130I	CCWWGG	1 cut(s)	73
Eco147I	AGGCCT	1 cut(s)	880
Eco24I	GRGCYC	1 cut(s)	73
Eco47I	GGWCC	1 cut(s)	37
Eco57I	CTGAAG	1 cut(s)	708
Eco72I	CACGTG	1 cut(s)	344
Eco88I	CYCGRG	1 cut(s)	190
EcoRII	CCWGG	3 cut(s)	651, 843, 902
EcoT14I	CCWWGG	1 cut(s)	73
EcoT38I	GRGCYC	1 cut(s)	73
ErhI	CCWWGG	1 cut(s)	73
Esp3I	CGTCTC	2 cut(s)	178, 413
FaeI	CATG	3 cut(s)	67, 158, 937
FaiI	YATR	8 cut(s)	65, 156, 226, 713, 828, 935, 947, 949
FaqI	GGGAC	2 cut(s)	44, 768
FatI	CATG	3 cut(s)	63, 154, 933
FauI	CCCGC	2 cut(s)	155, 452
FauNDI	CATATG	1 cut(s)	947
FblI	GTMKAC	2 cut(s)	282, 840
Fnu4HI	GCNGC	6 cut(s)	6, 277, 370, 373, 376, 900
FokI	GGATG	5 cut(s)	122, 236, 466, 598, 776
FriOI	GRGCYC	1 cut(s)	73
Fsp4HI	GCNGC	6 cut(s)	6, 277, 370, 373, 376, 900
FspBI	CTAG	1 cut(s)	735
GlaI	GCGC	3 cut(s)	61, 340, 677
GluI	GCNGC	6 cut(s)	6, 277, 370, 373, 376, 900
HaeIII	GGCC	4 cut(s)	8, 472, 651, 880
HapII	CCGG	5 cut(s)	191, 253, 273, 473, 810
HgaI	GACGC	3 cut(s)	268, 341, 883
HhaI	GCGC	3 cut(s)	62, 341, 678
Hin1I	GRCGYC	3 cut(s)	162, 279, 285
Hin1II	CATG	3 cut(s)	67, 158, 937
Hin6I	GCGC	3 cut(s)	60, 339, 676
HinP1I	GCGC	3 cut(s)	60, 339, 676
HincII	GTYRAC	2 cut(s)	283, 841
HindII	GTYRAC	2 cut(s)	283, 841
HindIII	AAGCTT	1 cut(s)	850
HinfI	GANTC	2 cut(s)	819, 857
HpaII	CCGG	5 cut(s)	191, 253, 273, 473, 810
HphI	GGTGA	1 cut(s)	675
Hpy166II	GTNNAC	4 cut(s)	187, 283, 665, 841
Hpy188I	TCNGA	8 cut(s)	89, 140, 211, 235, 485, 628, 730, 875
Hpy188III	TCNNGA	5 cut(s)	175, 253, 436, 593, 599
Hpy8I	GTNNAC	4 cut(s)	187, 283, 665, 841
Hpy99I	CGWCG	6 cut(s)	164, 284, 287, 290, 499, 899
HpyAV	CCTTC	4 cut(s)	113, 442, 547, 870
HpyCH4III	ACNGT	3 cut(s)	385, 499, 708
HpyCH4IV	ACGT	6 cut(s)	126, 162, 183, 285, 343, 422
HpyCH4V	TGCA	1 cut(s)	746
HpyF10VI	GCNNNNNNNGC	5 cut(s)	68, 375, 465, 469, 675
HpyF3I	CTNAG	1 cut(s)	831
HpySE526I	ACGT	6 cut(s)	126, 162, 183, 285, 343, 422
Hsp92I	GRCGYC	3 cut(s)	162, 279, 285
Hsp92II	CATG	3 cut(s)	67, 158, 937
HspAI	GCGC	3 cut(s)	60, 339, 676
Kpn2I	TCCGGA	1 cut(s)	252
Kzo9I	GATC	6 cut(s)	177, 595, 737, 870, 924, 939
LmnI	GCTCC	2 cut(s)	465, 526
Lsp1109I	GCAGC	2 cut(s)	359, 886
MaeI	CTAG	1 cut(s)	735
MaeII	ACGT	6 cut(s)	126, 162, 183, 285, 343, 422
MaeIII	GTNAC	2 cut(s)	54, 490
MalI	GATC	6 cut(s)	179, 597, 739, 872, 926, 941
MbiI	CCGCTC	1 cut(s)	369
MboI	GATC	6 cut(s)	177, 595, 737, 870, 924, 939
MboII	GAAGA	6 cut(s)	224, 562, 701, 732, 828, 878
MflI	RGATCY	2 cut(s)	595, 737
MhlI	GDGCHC	2 cut(s)	73, 417
MluCI	AATT	3 cut(s)	267, 576, 763
MlyI	GAGTC	2 cut(s)	828, 866
MmeI	TCCRAC	1 cut(s)	423
MroI	TCCGGA	1 cut(s)	252
MseI	TTAA	2 cut(s)	516, 762
MspA1I	CMGCKG	1 cut(s)	583
MspI	CCGG	5 cut(s)	191, 253, 273, 473, 810
MspR9I	CCNGG	6 cut(s)	191, 192, 273, 653, 845, 904
MvaI	CCWGG	3 cut(s)	653, 845, 904
MvnI	CGCG	1 cut(s)	60
MwoI	GCNNNNNNNGC	5 cut(s)	68, 375, 465, 469, 675
NciI	CCSGG	3 cut(s)	191, 192, 273
NdeI	CATATG	1 cut(s)	947
NdeII	GATC	6 cut(s)	177, 595, 737, 870, 924, 939
NlaIII	CATG	3 cut(s)	67, 158, 937
NlaIV	GGNNCC	1 cut(s)	528
NmuCI	GTSAC	1 cut(s)	54
PceI	AGGCCT	1 cut(s)	880
PcsI	WCGNNNNNNNCGW	4 cut(s)	123, 168, 207, 891
PflFI	GACNNNGTC	1 cut(s)	785
PkrI	GCNGC	6 cut(s)	7, 278, 371, 374, 377, 901
PleI	GAGTC	2 cut(s)	827, 865
PmaCI	CACGTG	1 cut(s)	344
PmlI	CACGTG	1 cut(s)	344
PpsI	GAGTC	2 cut(s)	827, 865
Ppu21I	YACGTR	2 cut(s)	184, 344
Psp6I	CCWGG	3 cut(s)	651, 843, 902
PspCI	CACGTG	1 cut(s)	344
PspGI	CCWGG	3 cut(s)	651, 843, 902
PspN4I	GGNNCC	1 cut(s)	528
PspPI	GGNCC	1 cut(s)	37
PstI	CTGCAG	1 cut(s)	748
PsuI	RGATCY	2 cut(s)	595, 737
PsyI	GACNNNGTC	1 cut(s)	785
RsaI	GTAC	2 cut(s)	96, 311
RsaNI	GTAC	2 cut(s)	95, 310
SalI	GTCGAC	2 cut(s)	281, 839
SaqAI	TTAA	2 cut(s)	516, 762
SatI	GCNGC	6 cut(s)	6, 277, 370, 373, 376, 900
Sau3AI	GATC	6 cut(s)	177, 595, 737, 870, 924, 939
Sau96I	GGNCC	1 cut(s)	37
SchI	GAGTC	2 cut(s)	828, 866
ScrFI	CCNGG	6 cut(s)	191, 192, 273, 653, 845, 904
SduI	GDGCHC	2 cut(s)	73, 417
SfcI	CTRYAG	1 cut(s)	744
SgrDI	CGTCGACG	1 cut(s)	281
SinI	GGWCC	1 cut(s)	37
SmaI	CCCGGG	1 cut(s)	192
Sse9I	AATT	3 cut(s)	267, 576, 763
SseBI	AGGCCT	1 cut(s)	880
SspMI	CTAG	1 cut(s)	735
StuI	AGGCCT	1 cut(s)	880
StyD4I	CCNGG	6 cut(s)	189, 190, 271, 651, 843, 902
StyI	CCWWGG	1 cut(s)	73
TaaI	ACNGT	3 cut(s)	385, 499, 708
TaiI	ACGT	6 cut(s)	129, 165, 186, 288, 346, 425
TaqI	TCGA	8 cut(s)	176, 282, 435, 592, 822, 840, 919, 927
TasI	AATT	3 cut(s)	267, 576, 763
TauI	GCSGC	4 cut(s)	8, 279, 372, 378
Tru1I	TTAA	2 cut(s)	516, 762
Tru9I	TTAA	2 cut(s)	516, 762
TscAI	CASTG	1 cut(s)	711
TseFI	GTSAC	1 cut(s)	54
TseI	GCWGC	2 cut(s)	372, 899
Tsp45I	GTSAC	1 cut(s)	54
TspGWI	ACGGA	3 cut(s)	333, 344, 598
TspMI	CCCGGG	1 cut(s)	190
TspRI	CASTG	1 cut(s)	711
Tth111I	GACNNNGTC	1 cut(s)	785
VpaK11BI	GGWCC	1 cut(s)	37
XapI	RAATTY	1 cut(s)	267
XmaI	CCCGGG	1 cut(s)	190
XmiI	GTMKAC	2 cut(s)	282, 840
XspI	CTAG	1 cut(s)	735
ZraI	GACGTC	2 cut(s)	163, 286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.