Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0012476

Physical Location & Seq

Genomic Coordinates Reverse (-)

19182750 .. 19185601

Gene Structure 2852 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G204600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGCAGCCAAAGAGCCAGAGATCATAAGAGACAAGGACCAGATGAGGAGATGGTCAAGAGCCATGAGATCCCAAGGCAAGACCGTAGGATTGGTACCCACCATGGGCTACCTCCACGATGGCCACGTGTCGCTCATCCGAGAAGCCCACAACCACACCGACCTCATCGTGGTCTCGATCTACGTGAACCCAGGTCAGTTCTCTCCCTCCGAAGACCTCTCCACCTACCCATCTGATTTCCATGGCGATATCCAGAAGCTCATGGCCGTTCCCGGCGGCGTTGATGTCGTTTTCAACCCTCACAATCTCTACGACTATGGAACCAGCAAAAACGCAAACGCAGCCGCACGTGCGAGTGATGACGCACGTGTGGGAAATGGCGGCAATGGGGTGGTTTCTTGCGTGGAGGAAAATGGGTTGGGGCATGAGACTTGGGTGAGGGTTGAGAGATTGGAGAAGGGCATGTGTGGGCAGAGTAGGCCTGTTTTTTTCAGAGGGGTTGCTACGGTTGTGAGCAAGTTGTTTAATATAGTGGAGCCTGATGTTGCTGTGTTTGGGAAGAAGGATTATCAGCAATGGCGGATTATTCAGCGGATGGTTCGAGATCTTGATTTTGGCATTAGAGTGATAGGTTCTGAAATAGTGCGTGAGAAAGATGGGCTTGCAATGAGTTCACGCAATGTGCGCCTTTCACCTGAAGAAAGGGAGAAGGCACTATCTATAAGCAAGTCATTGTCAAGAGCTAGATTAGCTGCAGCAAAGGGCCAAACTAATTGTAAAGAGTTGAGAGACTTGGTCACACAAGCAATACATGAATCTGGTGGAAGACTTGATTATGCTGAGATTGTAGACCAAGAAAGTTTGGAGCAAGCAAAAGAGATCAGAAGTCCTGTTGTTTTCTGTGTTGCTGCCTGGTTTGGAAAAGTCAGACTGATAGACAACATGGAGATAAACATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004592 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006573 GO:0006575 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009081 GO:0009108 GO:0009110 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0015939 GO:0015940 GO:0016053 GO:0016874 GO:0016879 GO:0016881 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0032787 GO:0033317 GO:0034641 GO:0042364 GO:0042398 GO:0042802 GO:0042803 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046983 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051186 GO:0051188 GO:0061458 GO:0071704 GO:0072330 GO:1901564 GO:1901566 GO:1901576 GO:1901605

KEGG Pathways

Metabolic & Signaling

ko00410 ko00770 ko01100 ko01110 map00410 map00770 map01100 map01110

Pfam Domains

Protein Families

Pantoate_ligase

Protein Analysis

320

Amino Acids

35.51

Weight (kDa)

7.1

Isoelectric Point (pI)

40.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012476)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48840
fragaria_vesca	FvH4_2g19300
malus_domestica	MD10G1166100.v1.1
prunus_persica	Prupe.8G204600_v2.0.a1 Prupe.8G204600_v2.0.a1
pyrus_communis	pycom10g14330
rosa_chinensis	RchiOBHm_Chr6g0285101
rosa_laevigata	RLG00000012672
rosa_multiflora	Rmu_sc0002535.1_g000036 Rmu_sc0003797.1_g000011
rosa_roxburghii	Rroxscaffold_7G00183530 Rroxscaffold_7G00183670 Rroxscaffold_7G00184030
rosa_rugosa	Rorug06G0171100
rosa_samantha	Rh6AG282300 Rh6BG283000 Rh6CG284900 Rh6DG278000
rosa_wichuraiana	Rw6G024270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	94
AccB1I	GGYRCC	1 cut(s)	94
AccI	GTMKAC	1 cut(s)	849
AciI	CCGC	5 cut(s)	276, 345, 381, 580, 592
AclWI	GGATC	1 cut(s)	63
AcoI	YGGCCR	2 cut(s)	121, 264
AcuI	CTGAAG	1 cut(s)	717
AcvI	CACGTG	3 cut(s)	127, 350, 368
AfaI	GTAC	1 cut(s)	96
AfiI	CCNNNNNNNGG	2 cut(s)	104, 169
AflIII	ACRYGT	2 cut(s)	126, 367
AgsI	TTSAA	1 cut(s)	295
AjnI	CCWGG	2 cut(s)	190, 911
AluBI	AGCT	3 cut(s)	259, 743, 752
AluI	AGCT	3 cut(s)	259, 743, 752
Alw26I	GTCTC	4 cut(s)	24, 178, 422, 783
AlwI	GGATC	1 cut(s)	63
AoxI	GGCC	4 cut(s)	121, 264, 479, 763
ApeKI	GCWGC	5 cut(s)	5, 341, 752, 755, 908
Asp718I	GGTACC	1 cut(s)	94
AspLEI	GCGC	1 cut(s)	687
AspS9I	GGNCC	2 cut(s)	37, 763
AsuC2I	CCSGG	1 cut(s)	273
AsuHPI	GGTGA	2 cut(s)	448, 684
AvaII	GGWCC	1 cut(s)	37
BalI	TGGCCA	1 cut(s)	123
BanI	GGYRCC	1 cut(s)	94
BbrPI	CACGTG	3 cut(s)	127, 350, 368
BbsI	GAAGAC	2 cut(s)	219, 832
BbvI	GCAGC	5 cut(s)	17, 353, 739, 767, 895
BccI	CCATC	5 cut(s)	45, 113, 238, 589, 650
BceAI	ACGGC	1 cut(s)	251
BciT130I	CCWGG	2 cut(s)	192, 913
BcnI	CCSGG	1 cut(s)	273
BcoDI	GTCTC	4 cut(s)	24, 178, 422, 783
BfaI	CTAG	1 cut(s)	744
BfmI	CTRYAG	1 cut(s)	753
BglII	AGATCT	1 cut(s)	604
BisI	GCNGC	8 cut(s)	6, 277, 342, 345, 382, 753, 756, 909
BlsI	GCNGC	8 cut(s)	7, 278, 343, 346, 383, 754, 757, 910
Bme1390I	CCNGG	3 cut(s)	192, 273, 913
Bme18I	GGWCC	1 cut(s)	37
BmgT120I	GGNCC	2 cut(s)	37, 763
BmiI	GGNNCC	3 cut(s)	96, 322, 537
BmrFI	CCNGG	3 cut(s)	192, 273, 913
BpiI	GAAGAC	2 cut(s)	219, 832
BpuMI	CCSGG	1 cut(s)	273
BsaAI	YACGTR	4 cut(s)	127, 184, 350, 368
BsaI	GGTCTC	1 cut(s)	178
BsaJI	CCNNGG	4 cut(s)	73, 102, 190, 241
Bsc4I	CCNNNNNNNGG	2 cut(s)	104, 169
Bse3DI	GCAATG	4 cut(s)	391, 581, 672, 685
BseBI	CCWGG	2 cut(s)	192, 913
BseDI	CCNNGG	4 cut(s)	73, 102, 190, 241
BseGI	GGATG	2 cut(s)	135, 600
BseLI	CCNNNNNNNGG	2 cut(s)	104, 169
BseMI	GCAATG	4 cut(s)	391, 581, 672, 685
BseMII	CTCAG	1 cut(s)	831
BseRI	GAGGAG	1 cut(s)	61
BseXI	GCAGC	5 cut(s)	17, 353, 739, 767, 895
BshFI	GGCC	4 cut(s)	123, 266, 481, 765
BshNI	GGYRCC	1 cut(s)	94
BsiSI	CCGG	1 cut(s)	273
BslI	CCNNNNNNNGG	2 cut(s)	104, 169
BsmAI	GTCTC	4 cut(s)	24, 178, 422, 783
BsnI	GGCC	4 cut(s)	123, 266, 481, 765
Bso31I	GGTCTC	1 cut(s)	178
Bsp143I	GATC	5 cut(s)	21, 68, 177, 604, 879
Bsp19I	CCATGG	2 cut(s)	102, 241
BspACI	CCGC	5 cut(s)	276, 345, 381, 580, 592
BspANI	GGCC	4 cut(s)	123, 266, 481, 765
BspCNI	CTCAG	1 cut(s)	832
BspLI	GGNNCC	3 cut(s)	96, 322, 537
BspMAI	CTGCAG	1 cut(s)	757
BspPI	GGATC	1 cut(s)	63
BspT107I	GGYRCC	1 cut(s)	94
BspTNI	GGTCTC	1 cut(s)	178
BsrDI	GCAATG	4 cut(s)	391, 581, 672, 685
BssECI	CCNNGG	4 cut(s)	73, 102, 190, 241
BssMI	GATC	5 cut(s)	21, 68, 177, 604, 879
BssT1I	CCWWGG	3 cut(s)	73, 102, 241
Bst2UI	CCWGG	2 cut(s)	192, 913
Bst4CI	ACNGT	2 cut(s)	85, 508
BstBAI	YACGTR	4 cut(s)	127, 184, 350, 368
BstC8I	GCNNGC	2 cut(s)	663, 870
BstDEI	CTNAG	1 cut(s)	840
BstDSI	CCRYGG	2 cut(s)	102, 241
BstF5I	GGATG	2 cut(s)	135, 600
BstHHI	GCGC	1 cut(s)	687
BstKTI	GATC	5 cut(s)	24, 71, 180, 607, 882
BstMAI	GTCTC	4 cut(s)	24, 178, 422, 783
BstMBI	GATC	5 cut(s)	21, 68, 177, 604, 879
BstMWI	GCNNNNNNNGC	5 cut(s)	341, 350, 478, 684, 749
BstNI	CCWGG	2 cut(s)	192, 913
BstNSI	RCATGY	1 cut(s)	466
BstSCI	CCNGG	3 cut(s)	190, 271, 911
BstSFI	CTRYAG	1 cut(s)	753
BstV1I	GCAGC	5 cut(s)	17, 353, 739, 767, 895
BstV2I	GAAGAC	2 cut(s)	219, 832
BstX2I	RGATCY	2 cut(s)	68, 604
BstYI	RGATCY	2 cut(s)	68, 604
BsuRI	GGCC	4 cut(s)	123, 266, 481, 765
BtgI	CCRYGG	2 cut(s)	102, 241
BtsCI	GGATG	2 cut(s)	135, 600
Cac8I	GCNNGC	2 cut(s)	663, 870
CfoI	GCGC	1 cut(s)	687
Cfr13I	GGNCC	2 cut(s)	37, 763
CseI	GACGC	1 cut(s)	371
Csp6I	GTAC	1 cut(s)	95
CviAII	CATG	8 cut(s)	64, 103, 242, 262, 425, 463, 812, 943
CviQI	GTAC	1 cut(s)	95
DdeI	CTNAG	1 cut(s)	840
DpnI	GATC	5 cut(s)	23, 70, 179, 606, 881
DpnII	GATC	5 cut(s)	21, 68, 177, 604, 879
EaeI	YGGCCR	2 cut(s)	121, 264
EciI	GGCGGA	1 cut(s)	595
Eco130I	CCWWGG	3 cut(s)	73, 102, 241
Eco147I	AGGCCT	1 cut(s)	481
Eco31I	GGTCTC	1 cut(s)	178
Eco32I	GATATC	1 cut(s)	250
Eco47I	GGWCC	1 cut(s)	37
Eco57I	CTGAAG	1 cut(s)	717
Eco72I	CACGTG	3 cut(s)	127, 350, 368
EcoRII	CCWGG	2 cut(s)	190, 911
EcoRV	GATATC	1 cut(s)	250
EcoT14I	CCWWGG	3 cut(s)	73, 102, 241
ErhI	CCWWGG	3 cut(s)	73, 102, 241
FaeI	CATG	8 cut(s)	67, 106, 245, 265, 428, 466, 815, 946
FalI	AAGNNNNNCTT	2 cut(s)	645, 677
FatI	CATG	8 cut(s)	63, 102, 241, 261, 424, 462, 811, 942
FauNDI	CATATG	1 cut(s)	956
FblI	GTMKAC	1 cut(s)	849
Fnu4HI	GCNGC	8 cut(s)	6, 277, 342, 345, 382, 753, 756, 909
FokI	GGATG	2 cut(s)	122, 607
Fsp4HI	GCNGC	8 cut(s)	6, 277, 342, 345, 382, 753, 756, 909
FspBI	CTAG	1 cut(s)	744
GlaI	GCGC	1 cut(s)	686
GluI	GCNGC	8 cut(s)	6, 277, 342, 345, 382, 753, 756, 909
HaeIII	GGCC	4 cut(s)	123, 266, 481, 765
HapII	CCGG	1 cut(s)	273
HgaI	GACGC	1 cut(s)	371
HhaI	GCGC	1 cut(s)	687
Hin1II	CATG	8 cut(s)	67, 106, 245, 265, 428, 466, 815, 946
Hin6I	GCGC	1 cut(s)	685
HinP1I	GCGC	1 cut(s)	685
HinfI	GANTC	1 cut(s)	815
HpaII	CCGG	1 cut(s)	273
HphI	GGTGA	2 cut(s)	448, 684
Hpy166II	GTNNAC	3 cut(s)	187, 674, 850
Hpy188I	TCNGA	7 cut(s)	140, 211, 235, 494, 637, 884, 929
Hpy188III	TCNNGA	6 cut(s)	57, 175, 253, 602, 608, 738
Hpy8I	GTNNAC	3 cut(s)	187, 674, 850
HpyAV	CCTTC	3 cut(s)	451, 556, 703
HpyCH4III	ACNGT	2 cut(s)	85, 508
HpyCH4IV	ACGT	4 cut(s)	126, 183, 349, 367
HpyCH4V	TGCA	2 cut(s)	665, 755
HpyF10VI	GCNNNNNNNGC	5 cut(s)	341, 350, 478, 684, 749
HpyF3I	CTNAG	1 cut(s)	840
HpySE526I	ACGT	4 cut(s)	126, 183, 349, 367
Hsp92II	CATG	8 cut(s)	67, 106, 245, 265, 428, 466, 815, 946
HspAI	GCGC	1 cut(s)	685
KpnI	GGTACC	1 cut(s)	98
Kzo9I	GATC	5 cut(s)	21, 68, 177, 604, 879
LmnI	GCTCC	2 cut(s)	535, 865
Lsp1109I	GCAGC	5 cut(s)	17, 353, 739, 767, 895
MaeI	CTAG	1 cut(s)	744
MaeII	ACGT	4 cut(s)	126, 183, 349, 367
MaeIII	GTNAC	1 cut(s)	796
MalI	GATC	5 cut(s)	23, 70, 179, 606, 881
MboI	GATC	5 cut(s)	21, 68, 177, 604, 879
MboII	GAAGA	4 cut(s)	224, 571, 710, 837
MflI	RGATCY	2 cut(s)	68, 604
MlsI	TGGCCA	1 cut(s)	123
MluCI	AATT	1 cut(s)	772
MluNI	TGGCCA	1 cut(s)	123
MnlI	CCTC	9 cut(s)	39, 122, 173, 217, 227, 309, 400, 432, 488
Mox20I	TGGCCA	1 cut(s)	123
MscI	TGGCCA	1 cut(s)	123
MseI	TTAA	1 cut(s)	525
MslI	CAYNNNNRTG	1 cut(s)	623
Msp20I	TGGCCA	1 cut(s)	123
MspA1I	CMGCKG	1 cut(s)	592
MspI	CCGG	1 cut(s)	273
MspR9I	CCNGG	3 cut(s)	192, 273, 913
MvaI	CCWGG	2 cut(s)	192, 913
MwoI	GCNNNNNNNGC	5 cut(s)	341, 350, 478, 684, 749
NciI	CCSGG	1 cut(s)	273
NcoI	CCATGG	2 cut(s)	102, 241
NdeI	CATATG	1 cut(s)	956
NdeII	GATC	5 cut(s)	21, 68, 177, 604, 879
NlaIII	CATG	8 cut(s)	67, 106, 245, 265, 428, 466, 815, 946
NlaIV	GGNNCC	3 cut(s)	96, 322, 537
NmuCI	GTSAC	1 cut(s)	796
NspI	RCATGY	1 cut(s)	466
PceI	AGGCCT	1 cut(s)	481
PcsI	WCGNNNNNNNCGW	1 cut(s)	123
PfeI	GAWTC	1 cut(s)	815
PflFI	GACNNNGTC	1 cut(s)	794
PkrI	GCNGC	8 cut(s)	7, 278, 343, 346, 383, 754, 757, 910
PmaCI	CACGTG	3 cut(s)	127, 350, 368
PmlI	CACGTG	3 cut(s)	127, 350, 368
Ppu21I	YACGTR	4 cut(s)	127, 184, 350, 368
Psp6I	CCWGG	2 cut(s)	190, 911
PspCI	CACGTG	3 cut(s)	127, 350, 368
PspGI	CCWGG	2 cut(s)	190, 911
PspN4I	GGNNCC	3 cut(s)	96, 322, 537
PspPI	GGNCC	2 cut(s)	37, 763
PstI	CTGCAG	1 cut(s)	757
PsuI	RGATCY	2 cut(s)	68, 604
PsyI	GACNNNGTC	1 cut(s)	794
RsaI	GTAC	1 cut(s)	96
RsaNI	GTAC	1 cut(s)	95
RseI	CAYNNNNRTG	1 cut(s)	623
SaqAI	TTAA	1 cut(s)	525
SatI	GCNGC	8 cut(s)	6, 277, 342, 345, 382, 753, 756, 909
Sau3AI	GATC	5 cut(s)	21, 68, 177, 604, 879
Sau96I	GGNCC	2 cut(s)	37, 763
ScrFI	CCNGG	3 cut(s)	192, 273, 913
SfcI	CTRYAG	1 cut(s)	753
SinI	GGWCC	1 cut(s)	37
SmiMI	CAYNNNNRTG	1 cut(s)	623
Sse9I	AATT	1 cut(s)	772
SseBI	AGGCCT	1 cut(s)	481
SsiI	CCGC	5 cut(s)	276, 345, 381, 580, 592
SspMI	CTAG	1 cut(s)	744
StuI	AGGCCT	1 cut(s)	481
StyD4I	CCNGG	3 cut(s)	190, 271, 911
StyI	CCWWGG	3 cut(s)	73, 102, 241
TaaI	ACNGT	2 cut(s)	85, 508
TaiI	ACGT	4 cut(s)	129, 186, 352, 370
TaqI	TCGA	2 cut(s)	176, 601
TasI	AATT	1 cut(s)	772
TauI	GCSGC	3 cut(s)	279, 347, 384
TfiI	GAWTC	1 cut(s)	815
Tru1I	TTAA	1 cut(s)	525
Tru9I	TTAA	1 cut(s)	525
TseFI	GTSAC	1 cut(s)	796
TseI	GCWGC	5 cut(s)	5, 341, 752, 755, 908
Tsp45I	GTSAC	1 cut(s)	796
TspDTI	ATGAA	1 cut(s)	828
Tth111I	GACNNNGTC	1 cut(s)	794
VpaK11BI	GGWCC	1 cut(s)	37
XceI	RCATGY	1 cut(s)	466
XmiI	GTMKAC	1 cut(s)	849
XspI	CTAG	1 cut(s)	744

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.