Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0012476

Physical Location & Seq

Genomic Coordinates Reverse (-)

16430448 .. 16433687

Gene Structure 3240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g19300.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGCAGCCAAAGAACCAGAGATAATCAGAGACAAGGACCAAATGAGGAACTGGTCAAGGTCTATGAGATCCCAAGGCAAAACCATAGGCCTCGTACCCACCATGGGCTACCTCCACGAAGGCCACCTTTCCCTCATCAGACAAGCCCGCACCCACTCTGACGTCATCGTCGTCTCCATCTACATCAACCCAGGTCAGTTCTCTCCCTCCGAAGACCTCTCCACGTACCCTTCGGACTTCCATGGCGATATCCAAAAGCTCAAGGCTGTTCCTGGCGGCGTTGACGTTGTTTTCAATCCTCACAATCTCTATGACTACGGAACCAACACGAGCACGTCGGTGAGTGATGGTGAAGGGGCAAAACCGGTATCTTGTGTGGAGGAGAAGGGGTTGGGGCATGAGACTTGGGTTAGAGTTGAGAGATTGGAGAAGGGTATGTGTGGGAAGAGTAGGCCGGTGTTTTTCAGAGGGGTTGCGACTGTTGTCACCAAGTTGTTCAACATTGTGGAGCCTGATGTTGCTCTGCTTGGGAAGAAGGATTATCAGCAATGGCGGATTATTCAGCGAATGGTTCGGGATCTTGATTTTTCTGTTAGAGTGATTGGTTCTGAAGTAGTCCGTGAAAATGATGGCCTAGCAATGAGTTCACGGAATGTGCGCCTCTCACCTGAAGAACGGCAAAAGGCACTATCTATAAACAAGTCACTATCAAGTGCTAGATTCTCTGCAGAAAAGGGTCATATTAGTTGTAAAGAATTAACATATTCGGTCATCCAAGCAATCAATGAAGCCGGTGGAAAGGTTGATTATGCTGAGATTGTTGACCAAGAAAGTTTGGAGCCAGTTGAAGAAATAAGAAGTCCTGTTGTGTTCTGTGTTGCTGCTTGGTTTGGAACGGTCAGATTGATAGATAACATGGAGATCAAAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004592 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006573 GO:0006575 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009081 GO:0009108 GO:0009110 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0015939 GO:0015940 GO:0016053 GO:0016874 GO:0016879 GO:0016881 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0032787 GO:0033317 GO:0034641 GO:0042364 GO:0042398 GO:0042802 GO:0042803 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046983 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051186 GO:0051188 GO:0061458 GO:0071704 GO:0072330 GO:1901564 GO:1901566 GO:1901576 GO:1901605

KEGG Pathways

Metabolic & Signaling

ko00410 ko00770 ko01100 ko01110 map00410 map00770 map01100 map01110

Pfam Domains

Protein Families

Pantoate_ligase

Protein Analysis

311

Amino Acids

34.62

Weight (kDa)

6.41

Isoelectric Point (pI)

40.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pantoate_ligase	PF02569	8 - 306	3.2e-98	Pantoate-beta-alanine ligase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012476)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48840
fragaria_vesca	FvH4_2g19300
malus_domestica	MD10G1166100.v1.1
prunus_persica	Prupe.8G204600_v2.0.a1 Prupe.8G204600_v2.0.a1
pyrus_communis	pycom10g14330
rosa_chinensis	RchiOBHm_Chr6g0285101
rosa_laevigata	RLG00000012672
rosa_multiflora	Rmu_sc0002535.1_g000036 Rmu_sc0003797.1_g000011
rosa_roxburghii	Rroxscaffold_7G00183530 Rroxscaffold_7G00183670 Rroxscaffold_7G00184030
rosa_rugosa	Rorug06G0171100
rosa_samantha	Rh6AG282300 Rh6BG283000 Rh6CG284900 Rh6DG278000
rosa_wichuraiana	Rw6G024270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	167
AatII	GACGTC	1 cut(s)	165
AciI	CCGC	3 cut(s)	148, 276, 553
AclWI	GGATC	2 cut(s)	63, 585
AcuI	CTGAAG	2 cut(s)	630, 690
AcyI	GRCGYC	1 cut(s)	162
AfaI	GTAC	2 cut(s)	96, 227
AfiI	CCNNNNNNNGG	1 cut(s)	104
AgeI	ACCGGT	1 cut(s)	364
AgsI	TTSAA	3 cut(s)	295, 499, 848
AjiI	CACGTC	1 cut(s)	336
AjnI	CCWGG	2 cut(s)	190, 271
AleI	CACNNNNGTG	1 cut(s)	338
AluBI	AGCT	1 cut(s)	259
AluI	AGCT	1 cut(s)	259
Alw21I	GWGCWC	1 cut(s)	335
Alw26I	GTCTC	3 cut(s)	24, 178, 395
AlwI	GGATC	2 cut(s)	63, 585
AoxI	GGCC	4 cut(s)	88, 121, 452, 631
ApeKI	GCWGC	2 cut(s)	5, 881
AsiGI	ACCGGT	1 cut(s)	364
AspLEI	GCGC	1 cut(s)	660
AspS9I	GGNCC	1 cut(s)	37
AsuHPI	GGTGA	4 cut(s)	352, 362, 478, 657
AvaII	GGWCC	1 cut(s)	37
BauI	CACGAG	1 cut(s)	328
BbsI	GAAGAC	1 cut(s)	219
Bbv12I	GWGCWC	1 cut(s)	335
BbvI	GCAGC	2 cut(s)	17, 868
BccI	CCATC	3 cut(s)	185, 341, 623
BceAI	ACGGC	1 cut(s)	692
BciT130I	CCWGG	2 cut(s)	192, 273
BcoDI	GTCTC	3 cut(s)	24, 178, 395
BfaI	CTAG	2 cut(s)	635, 717
BfmI	CTRYAG	1 cut(s)	726
BisI	GCNGC	3 cut(s)	6, 277, 882
BlsI	GCNGC	3 cut(s)	7, 278, 883
Bme1390I	CCNGG	2 cut(s)	192, 273
Bme18I	GGWCC	1 cut(s)	37
BmgBI	CACGTC	1 cut(s)	336
BmgT120I	GGNCC	1 cut(s)	37
BmiI	GGNNCC	3 cut(s)	322, 510, 840
BmrFI	CCNGG	2 cut(s)	192, 273
BoxI	GACNNNNGTC	1 cut(s)	482
BpiI	GAAGAC	1 cut(s)	219
BpuEI	CTTGAG	1 cut(s)	245
BsaAI	YACGTR	1 cut(s)	225
BsaHI	GRCGYC	1 cut(s)	162
BsaJI	CCNNGG	4 cut(s)	73, 102, 190, 241
BsaWI	WCCGGW	1 cut(s)	364
BsaXI	ACNNNNNCTCC	2 cut(s)	374, 404
Bsc4I	CCNNNNNNNGG	1 cut(s)	104
Bse118I	RCCGGY	3 cut(s)	364, 454, 791
Bse1I	ACTGG	2 cut(s)	56, 842
Bse3DI	GCAATG	2 cut(s)	554, 645
BseBI	CCWGG	2 cut(s)	192, 273
BseDI	CCNNGG	4 cut(s)	73, 102, 190, 241
BseGI	GGATG	1 cut(s)	771
BseLI	CCNNNNNNNGG	1 cut(s)	104
BseMI	GCAATG	2 cut(s)	554, 645
BseMII	CTCAG	1 cut(s)	804
BseNI	ACTGG	2 cut(s)	56, 842
BseRI	GAGGAG	1 cut(s)	395
BseXI	GCAGC	2 cut(s)	17, 868
BshFI	GGCC	4 cut(s)	90, 123, 454, 633
BshTI	ACCGGT	1 cut(s)	364
BsiHKAI	GWGCWC	1 cut(s)	335
BsiSI	CCGG	3 cut(s)	365, 455, 792
BslI	CCNNNNNNNGG	1 cut(s)	104
BsmAI	GTCTC	3 cut(s)	24, 178, 395
BsmBI	CGTCTC	1 cut(s)	178
BsnI	GGCC	4 cut(s)	90, 123, 454, 633
Bsp1286I	GDGCHC	1 cut(s)	335
Bsp143I	GATC	3 cut(s)	68, 577, 921
Bsp19I	CCATGG	2 cut(s)	102, 241
BspACI	CCGC	3 cut(s)	148, 276, 553
BspANI	GGCC	4 cut(s)	90, 123, 454, 633
BspCNI	CTCAG	1 cut(s)	805
BspLI	GGNNCC	3 cut(s)	322, 510, 840
BspMAI	CTGCAG	1 cut(s)	730
BspPI	GGATC	2 cut(s)	63, 585
BsrDI	GCAATG	2 cut(s)	554, 645
BsrFI	RCCGGY	3 cut(s)	364, 454, 791
BsrI	ACTGG	2 cut(s)	56, 842
BssAI	RCCGGY	3 cut(s)	364, 454, 791
BssECI	CCNNGG	4 cut(s)	73, 102, 190, 241
BssMI	GATC	3 cut(s)	68, 577, 921
BssNI	GRCGYC	1 cut(s)	162
BssSI	CACGAG	1 cut(s)	328
BssT1I	CCWWGG	3 cut(s)	73, 102, 241
Bst2BI	CACGAG	1 cut(s)	328
Bst2UI	CCWGG	2 cut(s)	192, 273
Bst4CI	ACNGT	2 cut(s)	481, 898
Bst6I	CTCTTC	1 cut(s)	440
BstACI	GRCGYC	1 cut(s)	162
BstBAI	YACGTR	1 cut(s)	225
BstC8I	GCNNGC	1 cut(s)	148
BstDEI	CTNAG	1 cut(s)	813
BstDSI	CCRYGG	2 cut(s)	102, 241
BstF5I	GGATG	1 cut(s)	771
BstHHI	GCGC	1 cut(s)	660
BstKTI	GATC	3 cut(s)	71, 580, 924
BstMAI	GTCTC	3 cut(s)	24, 178, 395
BstMBI	GATC	3 cut(s)	68, 577, 921
BstNI	CCWGG	2 cut(s)	192, 273
BstPAI	GACNNNNGTC	1 cut(s)	482
BstSCI	CCNGG	2 cut(s)	190, 271
BstSFI	CTRYAG	1 cut(s)	726
BstV1I	GCAGC	2 cut(s)	17, 868
BstV2I	GAAGAC	1 cut(s)	219
BstX2I	RGATCY	2 cut(s)	68, 577
BstYI	RGATCY	2 cut(s)	68, 577
BsuRI	GGCC	4 cut(s)	90, 123, 454, 633
BtgI	CCRYGG	2 cut(s)	102, 241
BtrI	CACGTC	1 cut(s)	336
BtsCI	GGATG	1 cut(s)	771
Cac8I	GCNNGC	1 cut(s)	148
CfoI	GCGC	1 cut(s)	660
Cfr10I	RCCGGY	3 cut(s)	364, 454, 791
Cfr13I	GGNCC	1 cut(s)	37
Csp6I	GTAC	2 cut(s)	95, 226
CspAI	ACCGGT	1 cut(s)	364
CviAII	CATG	4 cut(s)	103, 242, 398, 916
CviQI	GTAC	2 cut(s)	95, 226
DdeI	CTNAG	1 cut(s)	813
DpnI	GATC	3 cut(s)	70, 579, 923
DpnII	GATC	3 cut(s)	68, 577, 921
DrdI	GACNNNNNNGTC	1 cut(s)	167
DseDI	GACNNNNNNGTC	1 cut(s)	167
Eam1104I	CTCTTC	1 cut(s)	440
EarI	CTCTTC	1 cut(s)	440
EciI	GGCGGA	1 cut(s)	568
Eco130I	CCWWGG	3 cut(s)	73, 102, 241
Eco147I	AGGCCT	1 cut(s)	90
Eco32I	GATATC	1 cut(s)	250
Eco47I	GGWCC	1 cut(s)	37
Eco57I	CTGAAG	2 cut(s)	630, 690
EcoRII	CCWGG	2 cut(s)	190, 271
EcoRV	GATATC	1 cut(s)	250
EcoT14I	CCWWGG	3 cut(s)	73, 102, 241
ErhI	CCWWGG	3 cut(s)	73, 102, 241
Esp3I	CGTCTC	1 cut(s)	178
FaeI	CATG	4 cut(s)	106, 245, 401, 919
FalI	AAGNNNNNCTT	2 cut(s)	111, 143
FatI	CATG	4 cut(s)	102, 241, 397, 915
FauI	CCCGC	1 cut(s)	155
Fnu4HI	GCNGC	3 cut(s)	6, 277, 882
FokI	GGATG	1 cut(s)	758
Fsp4HI	GCNGC	3 cut(s)	6, 277, 882
FspBI	CTAG	2 cut(s)	635, 717
GlaI	GCGC	1 cut(s)	659
GluI	GCNGC	3 cut(s)	6, 277, 882
HaeIII	GGCC	4 cut(s)	90, 123, 454, 633
HapII	CCGG	3 cut(s)	365, 455, 792
HhaI	GCGC	1 cut(s)	660
Hin1I	GRCGYC	1 cut(s)	162
Hin1II	CATG	4 cut(s)	106, 245, 401, 919
Hin6I	GCGC	1 cut(s)	658
HinP1I	GCGC	1 cut(s)	658
HincII	GTYRAC	2 cut(s)	283, 823
HindII	GTYRAC	2 cut(s)	283, 823
HinfI	GANTC	1 cut(s)	720
HpaII	CCGG	3 cut(s)	365, 455, 792
HphI	GGTGA	4 cut(s)	352, 362, 478, 657
Hpy166II	GTNNAC	3 cut(s)	283, 647, 823
Hpy188I	TCNGA	8 cut(s)	29, 140, 160, 211, 235, 467, 610, 902
Hpy188III	TCNNGA	2 cut(s)	575, 581
Hpy8I	GTNNAC	3 cut(s)	283, 647, 823
Hpy99I	CGWCG	2 cut(s)	173, 340
HpyAV	CCTTC	6 cut(s)	113, 240, 347, 379, 424, 529
HpyCH4III	ACNGT	2 cut(s)	481, 898
HpyCH4IV	ACGT	4 cut(s)	162, 224, 285, 335
HpyCH4V	TGCA	1 cut(s)	728
HpyF3I	CTNAG	1 cut(s)	813
HpySE526I	ACGT	4 cut(s)	162, 224, 285, 335
Hsp92I	GRCGYC	1 cut(s)	162
Hsp92II	CATG	4 cut(s)	106, 245, 401, 919
HspAI	GCGC	1 cut(s)	658
Kzo9I	GATC	3 cut(s)	68, 577, 921
LmnI	GCTCC	2 cut(s)	508, 838
Lsp1109I	GCAGC	2 cut(s)	17, 868
MaeI	CTAG	2 cut(s)	635, 717
MaeII	ACGT	4 cut(s)	162, 224, 285, 335
MaeIII	GTNAC	2 cut(s)	484, 702
MalI	GATC	3 cut(s)	70, 579, 923
MboI	GATC	3 cut(s)	68, 577, 921
MboII	GAAGA	5 cut(s)	224, 457, 544, 683, 860
MflI	RGATCY	2 cut(s)	68, 577
MhlI	GDGCHC	1 cut(s)	335
MluCI	AATT	1 cut(s)	755
MseI	TTAA	1 cut(s)	758
MslI	CAYNNNNRTG	1 cut(s)	338
MspI	CCGG	3 cut(s)	365, 455, 792
MspR9I	CCNGG	2 cut(s)	192, 273
MvaI	CCWGG	2 cut(s)	192, 273
NcoI	CCATGG	2 cut(s)	102, 241
NdeII	GATC	3 cut(s)	68, 577, 921
NlaIII	CATG	4 cut(s)	106, 245, 401, 919
NlaIV	GGNNCC	3 cut(s)	322, 510, 840
NmuCI	GTSAC	2 cut(s)	484, 702
OliI	CACNNNNGTG	1 cut(s)	338
PceI	AGGCCT	1 cut(s)	90
PcsI	WCGNNNNNNNCGW	1 cut(s)	168
PfeI	GAWTC	1 cut(s)	720
PinAI	ACCGGT	1 cut(s)	364
PkrI	GCNGC	3 cut(s)	7, 278, 883
Ppu21I	YACGTR	1 cut(s)	225
PshAI	GACNNNNGTC	1 cut(s)	482
Psp6I	CCWGG	2 cut(s)	190, 271
PspGI	CCWGG	2 cut(s)	190, 271
PspN4I	GGNNCC	3 cut(s)	322, 510, 840
PspPI	GGNCC	1 cut(s)	37
PstI	CTGCAG	1 cut(s)	730
PsuI	RGATCY	2 cut(s)	68, 577
RsaI	GTAC	2 cut(s)	96, 227
RsaNI	GTAC	2 cut(s)	95, 226
RseI	CAYNNNNRTG	1 cut(s)	338
SaqAI	TTAA	1 cut(s)	758
SatI	GCNGC	3 cut(s)	6, 277, 882
Sau3AI	GATC	3 cut(s)	68, 577, 921
Sau96I	GGNCC	1 cut(s)	37
ScrFI	CCNGG	2 cut(s)	192, 273
SduI	GDGCHC	1 cut(s)	335
SfcI	CTRYAG	1 cut(s)	726
SinI	GGWCC	1 cut(s)	37
SmiMI	CAYNNNNRTG	1 cut(s)	338
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
Sse9I	AATT	1 cut(s)	755
SseBI	AGGCCT	1 cut(s)	90
SsiI	CCGC	3 cut(s)	148, 276, 553
SspMI	CTAG	2 cut(s)	635, 717
StuI	AGGCCT	1 cut(s)	90
StyD4I	CCNGG	2 cut(s)	190, 271
StyI	CCWWGG	3 cut(s)	73, 102, 241
TaaI	ACNGT	2 cut(s)	481, 898
TaiI	ACGT	4 cut(s)	165, 227, 288, 338
TaqII	GACCGA	1 cut(s)	757
TasI	AATT	1 cut(s)	755
TauI	GCSGC	1 cut(s)	279
TfiI	GAWTC	1 cut(s)	720
Tru1I	TTAA	1 cut(s)	758
Tru9I	TTAA	1 cut(s)	758
TseFI	GTSAC	2 cut(s)	484, 702
TseI	GCWGC	2 cut(s)	5, 881
Tsp45I	GTSAC	2 cut(s)	484, 702
TspDTI	ATGAA	1 cut(s)	801
TspGWI	ACGGA	3 cut(s)	333, 608, 664
VpaK11BI	GGWCC	1 cut(s)	37
XspI	CTAG	2 cut(s)	635, 717
ZraI	GACGTC	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.