AT5G49525

No description available

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
20096932 .. 20097551
620 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G49525.1

Sequence Viewer

Length: 243 bp
ATGTCAGCTTCCCGATGGACGTTGATGGATCTACCATCGTACCTGTCGTCATCGTGGGCATTCCGGTGGCCGGAGGTGAATCTTTCATCCCTGAGCTCTGGTTGGAACATGAGATTGTTGTCCTTGTCGGGTGATCTCTCCATAGTTGATGATCTTTTGTGGAGTTTTGTCTCAATCATTGAATCTTTAGCTATCACTGCTACGGTCTGTTGCTTCTTCTTGTTTTGTGGTTGTACCCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

80

Amino Acids

8.95

Weight (kDa)

4.23

Isoelectric Point (pI)

59.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016694)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G49525
fragaria_vesca FvH4_4g20450
malus_domestica MD13G1149600.v1.1 MD16G1149900.v1.1
prunus_persica Prupe.1G113600_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0425921
rosa_laevigata RLG00000007331
rosa_multiflora Rmu_ssc0000281.1_g000026
rosa_roxburghii Rroxscaffold_5G00367940
rosa_rugosa Rorug04G0207100
rosa_samantha Rh4BG270200 Rh4CG282800 Rh4DG266600
rosa_wichuraiana Rw4G022820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 36
AcoI YGGCCR 1 cut(s) 68
AfaI GTAC 2 cut(s) 41, 235
AfiI CCNNNNNNNGG 1 cut(s) 70
AgsI TTSAA 1 cut(s) 182
AluBI AGCT 3 cut(s) 8, 96, 191
AluI AGCT 3 cut(s) 8, 96, 191
Alw21I GWGCWC 1 cut(s) 98
Alw26I GTCTC 1 cut(s) 175
AlwI GGATC 1 cut(s) 36
AoxI GGCC 1 cut(s) 68
AsuHPI GGTGA 2 cut(s) 88, 143
BaeI ACNNNNGTAYC 2 cut(s) 23, 56
BanII GRGCYC 1 cut(s) 98
Bbv12I GWGCWC 1 cut(s) 98
BccI CCATC 3 cut(s) 9, 19, 43
BcoDI GTCTC 1 cut(s) 175
Bpu10I CCTNAGC 1 cut(s) 92
BsaWI WCCGGW 1 cut(s) 63
Bsc4I CCNNNNNNNGG 1 cut(s) 70
BseGI GGATG 1 cut(s) 86
BseLI CCNNNNNNNGG 1 cut(s) 70
BseMII CTCAG 1 cut(s) 83
BshFI GGCC 1 cut(s) 70
BsiHKAI GWGCWC 1 cut(s) 98
BsiSI CCGG 2 cut(s) 64, 71
BslI CCNNNNNNNGG 1 cut(s) 70
BsmAI GTCTC 1 cut(s) 175
BsmI GAATGC 1 cut(s) 59
BsnI GGCC 1 cut(s) 70
Bsp1286I GDGCHC 1 cut(s) 98
Bsp143I GATC 3 cut(s) 28, 133, 151
BspANI GGCC 1 cut(s) 70
BspCNI CTCAG 1 cut(s) 84
BspPI GGATC 1 cut(s) 36
BssMI GATC 3 cut(s) 28, 133, 151
Bst4CI ACNGT 1 cut(s) 205
BstDEI CTNAG 1 cut(s) 92
BstF5I GGATG 1 cut(s) 86
BstKTI GATC 3 cut(s) 31, 136, 154
BstMAI GTCTC 1 cut(s) 175
BstMBI GATC 3 cut(s) 28, 133, 151
BstMWI GCNNNNNNNGC 1 cut(s) 197
BstX2I RGATCY 1 cut(s) 28
BstYI RGATCY 1 cut(s) 28
BsuRI GGCC 1 cut(s) 70
BtsCI GGATG 1 cut(s) 86
BtsI GCAGTG 1 cut(s) 195
BtsIMutI CAGTG 1 cut(s) 195
Csp6I GTAC 2 cut(s) 40, 234
CviAII CATG 1 cut(s) 109
CviJI RGCY 4 cut(s) 8, 70, 96, 191
CviKI_1 RGCY 4 cut(s) 8, 70, 96, 191
CviQI GTAC 2 cut(s) 40, 234
DdeI CTNAG 1 cut(s) 92
DpnI GATC 3 cut(s) 30, 135, 153
DpnII GATC 3 cut(s) 28, 133, 151
EaeI YGGCCR 1 cut(s) 68
Ecl136II GAGCTC 1 cut(s) 96
Eco24I GRGCYC 1 cut(s) 98
Eco53kI GAGCTC 1 cut(s) 96
EcoICRI GAGCTC 1 cut(s) 96
EcoT38I GRGCYC 1 cut(s) 98
FaeI CATG 1 cut(s) 112
FaiI YATR 2 cut(s) 110, 143
FatI CATG 1 cut(s) 108
FokI GGATG 1 cut(s) 73
FriOI GRGCYC 1 cut(s) 98
HaeIII GGCC 1 cut(s) 70
HapII CCGG 2 cut(s) 64, 71
Hin1II CATG 1 cut(s) 112
HinfI GANTC 2 cut(s) 79, 182
HpaII CCGG 2 cut(s) 64, 71
HphI GGTGA 2 cut(s) 88, 143
Hpy188III TCNNGA 1 cut(s) 12
HpyCH4III ACNGT 1 cut(s) 205
HpyCH4IV ACGT 1 cut(s) 20
HpyF10VI GCNNNNNNNGC 1 cut(s) 197
HpyF3I CTNAG 1 cut(s) 92
HpySE526I ACGT 1 cut(s) 20
Hsp92II CATG 1 cut(s) 112
Kzo9I GATC 3 cut(s) 28, 133, 151
LpnPI CCDG 5 cut(s) 56, 77, 84, 84, 104
MaeII ACGT 1 cut(s) 20
MalI GATC 3 cut(s) 30, 135, 153
MboI GATC 3 cut(s) 28, 133, 151
MboII GAAGA 1 cut(s) 208
MflI RGATCY 1 cut(s) 28
MhlI GDGCHC 1 cut(s) 98
MmeI TCCRAC 1 cut(s) 83
MnlI CCTC 1 cut(s) 67
MslI CAYNNNNRTG 1 cut(s) 64
MspI CCGG 2 cut(s) 64, 71
Mva1269I GAATGC 1 cut(s) 59
MwoI GCNNNNNNNGC 1 cut(s) 197
NdeII GATC 3 cut(s) 28, 133, 151
NlaIII CATG 1 cut(s) 112
PcsI WCGNNNNNNNCGW 1 cut(s) 44
PctI GAATGC 1 cut(s) 59
PfeI GAWTC 2 cut(s) 79, 182
Psp124BI GAGCTC 1 cut(s) 98
PsuI RGATCY 1 cut(s) 28
RsaI GTAC 2 cut(s) 41, 235
RsaNI GTAC 2 cut(s) 40, 234
RseI CAYNNNNRTG 1 cut(s) 64
SacI GAGCTC 1 cut(s) 98
Sau3AI GATC 3 cut(s) 28, 133, 151
SduI GDGCHC 1 cut(s) 98
SetI ASST 6 cut(s) 10, 23, 45, 78, 98, 193
SmiMI CAYNNNNRTG 1 cut(s) 64
SstI GAGCTC 1 cut(s) 98
TaaI ACNGT 1 cut(s) 205
TaiI ACGT 1 cut(s) 23
TfiI GAWTC 2 cut(s) 79, 182
TscAI CASTG 1 cut(s) 202
TspDTI ATGAA 1 cut(s) 75
TspRI CASTG 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.