Rh4BG270200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0016694
Physical Location & Seq
Reverse (-)
44422402 .. 44428150
5749 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG270200.1

Sequence Viewer

Length: 609 bp
ATGGCGGCGTGGTACTCCCCAGCTTTCCGGTGGCTGGAGGAGTTAGATTTCTCGTTGCCATCAGCTGGAAGTTTCAGGTGGCCGGGAGTGTTTGATTTCTCCTACTTTACTTCGGGGTGGAACTTGAACTTGTCGAGCTTCAGGATATGGTTCGATTTTTCTATAGTTGATGATGTGCTGTGGACCTTGGTGACTGTGGTGGAGTCCTTGGTTTTGGCTGCCATGCTCTGCTTCTTCTTTCTCTTCTGTGATGCTTTTGCAAAGGAAATTTGCTTTCATCGGGGGATGCTTCGCTCGCCCAGCTTTGATAAGCTTATGCCTCGTGAAGAATTTACTGATGCCTCAAATGGATATCTCATTGAGGACACCTGCGTGCTTGGAGCTGAGGTTTTCGTTTGTAAAGAAAGAACAAAAGGCAAAAGAGAGTATTTATCAAAGATAAATGATGCCTTTATCCGCCCTGCTTGCTGGAAGTTTAAGAATTTTTCAAAGTTGACTGGTGAATATTTTAGGACAGCACCATTCGATGCTGGAGACCAGAAATGGCGGATACAGCTCTTTCCAAGGGATTTGCCAATGGAAAGGGTACTCATCTTTCTATTTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

202

Amino Acids

23.7

Weight (kDa)

5.55

Isoelectric Point (pI)

43.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016694)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G49525
fragaria_vesca FvH4_4g20450
malus_domestica MD13G1149600.v1.1 MD16G1149900.v1.1
prunus_persica Prupe.1G113600_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0425921
rosa_laevigata RLG00000007331
rosa_multiflora Rmu_ssc0000281.1_g000026
rosa_roxburghii Rroxscaffold_5G00367940
rosa_rugosa Rorug04G0207100
rosa_samantha Rh4BG270200 Rh4CG282800 Rh4DG266600
rosa_wichuraiana Rw4G022820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 377
Acc36I ACCTGC 1 cut(s) 377
AccB7I CCANNNNNTGG 1 cut(s) 65
AciI CCGC 3 cut(s) 5, 457, 547
AcoI YGGCCR 1 cut(s) 80
AcsI RAATTY 3 cut(s) 267, 329, 481
AcuI CTGAAG 1 cut(s) 124
AfaI GTAC 2 cut(s) 14, 588
AfiI CCNNNNNNNGG 2 cut(s) 34, 65
AgsI TTSAA 2 cut(s) 127, 489
AleI CACNNNNGTG 1 cut(s) 371
AluBI AGCT 7 cut(s) 23, 65, 138, 303, 313, 383, 556
AluI AGCT 7 cut(s) 23, 65, 138, 303, 313, 383, 556
Alw26I GTCTC 1 cut(s) 528
AoxI GGCC 1 cut(s) 80
ApeKI GCWGC 1 cut(s) 218
ApoI RAATTY 3 cut(s) 267, 329, 481
AspS9I GGNCC 1 cut(s) 183
AsuC2I CCSGG 1 cut(s) 84
AsuHPI GGTGA 2 cut(s) 202, 512
AvaII GGWCC 1 cut(s) 183
BauI CACGAG 1 cut(s) 321
BbvCI CCTCAGC 1 cut(s) 384
BbvI GCAGC 1 cut(s) 205
BccI CCATC 1 cut(s) 67
BciVI GTATCC 1 cut(s) 543
BcnI CCSGG 1 cut(s) 84
BcoDI GTCTC 1 cut(s) 528
BfmI CTRYAG 1 cut(s) 162
BfuAI ACCTGC 1 cut(s) 377
BfuI GTATCC 1 cut(s) 543
BisI GCNGC 2 cut(s) 6, 219
BlsI GCNGC 2 cut(s) 7, 220
Bme1390I CCNGG 1 cut(s) 84
Bme18I GGWCC 1 cut(s) 183
BmgT120I GGNCC 1 cut(s) 183
BmrFI CCNGG 1 cut(s) 84
BmsI GCATC 5 cut(s) 241, 276, 328, 436, 517
BpmI CTGGAG 2 cut(s) 56, 552
Bpu10I CCTNAGC 1 cut(s) 384
BpuMI CCSGG 1 cut(s) 84
BsaI GGTCTC 1 cut(s) 528
BsaJI CCNNGG 3 cut(s) 186, 207, 563
BsaWI WCCGGW 1 cut(s) 27
BsaXI ACNNNNNCTCC 2 cut(s) 372, 402
Bsc4I CCNNNNNNNGG 2 cut(s) 34, 65
Bse1I ACTGG 1 cut(s) 502
BseDI CCNNGG 3 cut(s) 186, 207, 563
BseGI GGATG 1 cut(s) 291
BseLI CCNNNNNNNGG 2 cut(s) 34, 65
BseMII CTCAG 1 cut(s) 375
BseNI ACTGG 1 cut(s) 502
BseRI GAGGAG 1 cut(s) 53
BseXI GCAGC 1 cut(s) 205
BseYI CCCAGC 2 cut(s) 19, 299
BshFI GGCC 1 cut(s) 82
BsiSI CCGG 2 cut(s) 28, 83
BslI CCNNNNNNNGG 2 cut(s) 34, 65
BsmAI GTCTC 1 cut(s) 528
BsnI GGCC 1 cut(s) 82
Bso31I GGTCTC 1 cut(s) 528
BspACI CCGC 3 cut(s) 5, 457, 547
BspANI GGCC 1 cut(s) 82
BspCNI CTCAG 1 cut(s) 376
BspMI ACCTGC 1 cut(s) 377
BspTNI GGTCTC 1 cut(s) 528
BsrI ACTGG 1 cut(s) 502
BssECI CCNNGG 3 cut(s) 186, 207, 563
BssSI CACGAG 1 cut(s) 321
BssT1I CCWWGG 3 cut(s) 186, 207, 563
Bst2BI CACGAG 1 cut(s) 321
Bst4CI ACNGT 1 cut(s) 196
Bst6I CTCTTC 1 cut(s) 248
BstC8I GCNNGC 3 cut(s) 296, 374, 466
BstDEI CTNAG 1 cut(s) 384
BstF5I GGATG 1 cut(s) 291
BstMAI GTCTC 1 cut(s) 528
BstMWI GCNNNNNNNGC 4 cut(s) 295, 300, 465, 553
BstSCI CCNGG 1 cut(s) 82
BstSFI CTRYAG 1 cut(s) 162
BstV1I GCAGC 1 cut(s) 205
BsuI GTATCC 1 cut(s) 543
BsuRI GGCC 1 cut(s) 82
BtsCI GGATG 1 cut(s) 291
BveI ACCTGC 1 cut(s) 377
Cac8I GCNNGC 3 cut(s) 296, 374, 466
Cfr13I GGNCC 1 cut(s) 183
Csp6I GTAC 2 cut(s) 13, 587
CviAII CATG 1 cut(s) 223
CviQI GTAC 2 cut(s) 13, 587
DdeI CTNAG 1 cut(s) 384
EaeI YGGCCR 1 cut(s) 80
Eam1104I CTCTTC 1 cut(s) 248
EarI CTCTTC 1 cut(s) 248
EciI GGCGGA 2 cut(s) 446, 562
Eco130I CCWWGG 3 cut(s) 186, 207, 563
Eco31I GGTCTC 1 cut(s) 528
Eco32I GATATC 1 cut(s) 353
Eco47I GGWCC 1 cut(s) 183
Eco57I CTGAAG 1 cut(s) 124
EcoRV GATATC 1 cut(s) 353
EcoT14I CCWWGG 3 cut(s) 186, 207, 563
ErhI CCWWGG 3 cut(s) 186, 207, 563
FaeI CATG 1 cut(s) 226
FaiI YATR 4 cut(s) 148, 164, 224, 317
FatI CATG 1 cut(s) 222
Fnu4HI GCNGC 2 cut(s) 6, 219
FokI GGATG 1 cut(s) 298
Fsp4HI GCNGC 2 cut(s) 6, 219
GluI GCNGC 2 cut(s) 6, 219
GsaI CCCAGC 2 cut(s) 23, 303
GsuI CTGGAG 2 cut(s) 56, 552
HaeIII GGCC 1 cut(s) 82
HapII CCGG 2 cut(s) 28, 83
Hin1II CATG 1 cut(s) 226
HincII GTYRAC 1 cut(s) 495
HindII GTYRAC 1 cut(s) 495
HindIII AAGCTT 1 cut(s) 311
HinfI GANTC 1 cut(s) 203
HpaII CCGG 2 cut(s) 28, 83
HphI GGTGA 2 cut(s) 202, 512
Hpy166II GTNNAC 2 cut(s) 183, 495
Hpy188III TCNNGA 3 cut(s) 142, 323, 606
Hpy8I GTNNAC 2 cut(s) 183, 495
HpyCH4III ACNGT 1 cut(s) 196
HpyCH4V TGCA 1 cut(s) 260
HpyF10VI GCNNNNNNNGC 4 cut(s) 295, 300, 465, 553
HpyF3I CTNAG 1 cut(s) 384
Hsp92II CATG 1 cut(s) 226
LmnI GCTCC 1 cut(s) 380
Lsp1109I GCAGC 1 cut(s) 205
LweI GCATC 5 cut(s) 241, 276, 328, 436, 517
MaeIII GTNAC 1 cut(s) 190
MboII GAAGA 3 cut(s) 226, 235, 338
MluCI AATT 3 cut(s) 267, 329, 481
MlyI GAGTC 1 cut(s) 212
MnlI CCTC 5 cut(s) 31, 330, 352, 355, 379
MseI TTAA 1 cut(s) 477
MslI CAYNNNNRTG 1 cut(s) 371
MspA1I CMGCKG 1 cut(s) 65
MspI CCGG 2 cut(s) 28, 83
MspR9I CCNGG 1 cut(s) 84
MwoI GCNNNNNNNGC 4 cut(s) 295, 300, 465, 553
NciI CCSGG 1 cut(s) 84
NlaIII CATG 1 cut(s) 226
NmuCI GTSAC 1 cut(s) 190
OliI CACNNNNGTG 1 cut(s) 371
PaqCI CACCTGC 1 cut(s) 377
PflMI CCANNNNNTGG 1 cut(s) 65
PkrI GCNGC 2 cut(s) 7, 220
PleI GAGTC 1 cut(s) 211
PpsI GAGTC 1 cut(s) 211
PspFI CCCAGC 2 cut(s) 19, 299
PspPI GGNCC 1 cut(s) 183
PvuII CAGCTG 1 cut(s) 65
RsaI GTAC 2 cut(s) 14, 588
RsaNI GTAC 2 cut(s) 13, 587
RseI CAYNNNNRTG 1 cut(s) 371
SaqAI TTAA 1 cut(s) 477
SatI GCNGC 2 cut(s) 6, 219
Sau96I GGNCC 1 cut(s) 183
SchI GAGTC 1 cut(s) 212
ScrFI CCNGG 1 cut(s) 84
SfaNI GCATC 5 cut(s) 241, 276, 328, 436, 517
SfcI CTRYAG 1 cut(s) 162
SinI GGWCC 1 cut(s) 183
SmiMI CAYNNNNRTG 1 cut(s) 371
Sse9I AATT 3 cut(s) 267, 329, 481
SsiI CCGC 3 cut(s) 5, 457, 547
SspI AATATT 1 cut(s) 506
StyD4I CCNGG 1 cut(s) 82
StyI CCWWGG 3 cut(s) 186, 207, 563
TaaI ACNGT 1 cut(s) 196
TaqI TCGA 3 cut(s) 134, 153, 525
TasI AATT 3 cut(s) 267, 329, 481
TauI GCSGC 1 cut(s) 8
Tru1I TTAA 1 cut(s) 477
Tru9I TTAA 1 cut(s) 477
TseFI GTSAC 1 cut(s) 190
TseI GCWGC 1 cut(s) 218
Tsp45I GTSAC 1 cut(s) 190
TspDTI ATGAA 1 cut(s) 266
Van91I CCANNNNNTGG 1 cut(s) 65
VpaK11BI GGWCC 1 cut(s) 183
XapI RAATTY 3 cut(s) 267, 329, 481
XcmI CCANNNNNNNNNTGG 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.