Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0016694

Physical Location & Seq

Genomic Coordinates Forward (+)

15870033 .. 15873944

Gene Structure 3912 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007331

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGCGGCGTGGTACTCCACAGCTTTCCGGTGGCTGGAGGAGTTAGATTTCTCGTTGCCATCTGCTGGAAGTTTCAGGTGGCCGGGAGTGTTTGATTTCTCCTACTTTACTTCGGGGTGGAACTTGAACTTGTCGAGCTTCAGGATATGGTTCGATTTTTCTATAGTTGATGATGTGCTGTGGACGAGTTCTGAGATCATATTCAGAATTTCAGATTCACCACCAAGTCATTATAGTTTGAAAGTAAATTCTTTTTCACTAATGACTATATATTCGGCGGATGGATATGAAGCGGAGGTGTTCGAAGCTGGAGGGTACAAATGGAAACTGGTAGTCTACCCACAAGGAATCAAGAAAAGAAATGTGGCAGACCACATCTCCCTCTACTTGGAACTGGCTGGAATAACCTCATTACAGAGAAATTTGCTTTCATATCGGGGGATGCTTCGCTCGCCCAGCTTTGATAAGCTTATGCCTCGTAAAGAATTTACTGATGCCTCAAATGGTTATCTCATTGAGGACACCTGCGTGCTTGGAGCTGAGGTTTTTGTTTGTAAAGAAAGAACAAAAGGCAAAAGAGAGTATTTATCAAAGATAAATGATGCCTTTATCTGCAAGCAGGTCTGGAAGGTTAAGAATTTTTCAAAGTTGACTGATGAATATTATAGGTCAAAACCATTCGATGCTGGAGACCAGAAATGGCGGATACAGCTCTTTCCCAAGGGATTTGCCAATGGAAAGGGTACTCATCTTTCTATTTTCTTGACATTGGCTGATAGGAAACCAATTCCTCCTGTGTCCAAAATATTTGTAGCGTTTACCCTGCGCATTGTAAACACTGTTTCACTAACAAGAAGTCGTCGTGGGGTGCGGCTGACTTCATTAGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

MATH

Protein Analysis

297

Amino Acids

34.07

Weight (kDa)

9.47

Isoelectric Point (pI)

37.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	77 - 134	8.4e-12	MATH domain
MATH_2	PF22486	208 - 282	1.8e-17	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0016694)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49525
fragaria_vesca	FvH4_4g20450
malus_domestica	MD13G1149600.v1.1 MD16G1149900.v1.1
prunus_persica	Prupe.1G113600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0425921
rosa_laevigata	RLG00000007331
rosa_multiflora	Rmu_ssc0000281.1_g000026
rosa_roxburghii	Rroxscaffold_5G00367940
rosa_rugosa	Rorug04G0207100
rosa_samantha	Rh4BG270200 Rh4CG282800 Rh4DG266600
rosa_wichuraiana	Rw4G022820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	533
Acc16I	TGCGCA	1 cut(s)	827
Acc36I	ACCTGC	2 cut(s)	533, 610
AccB7I	CCANNNNNTGG	1 cut(s)	65
AccI	GTMKAC	1 cut(s)	336
AciI	CCGC	5 cut(s)	5, 278, 293, 703, 871
AcoI	YGGCCR	1 cut(s)	80
AcsI	RAATTY	5 cut(s)	207, 247, 421, 485, 637
AcuI	CTGAAG	1 cut(s)	124
AfaI	GTAC	3 cut(s)	14, 317, 745
AfiI	CCNNNNNNNGG	3 cut(s)	34, 65, 388
AgsI	TTSAA	3 cut(s)	127, 241, 645
AleI	CACNNNNGTG	1 cut(s)	527
AluBI	AGCT	7 cut(s)	23, 138, 308, 459, 469, 539, 712
AluI	AGCT	7 cut(s)	23, 138, 308, 459, 469, 539, 712
Alw26I	GTCTC	1 cut(s)	684
AoxI	GGCC	1 cut(s)	80
ApoI	RAATTY	5 cut(s)	207, 247, 421, 485, 637
ArsI	GACNNNNNNTTYG	2 cut(s)	256, 288
AspLEI	GCGC	1 cut(s)	828
AsuC2I	CCSGG	1 cut(s)	84
AsuHPI	GGTGA	1 cut(s)	210
AsuII	TTCGAA	1 cut(s)	303
BbvCI	CCTCAGC	1 cut(s)	540
BccI	CCATC	2 cut(s)	67, 275
BciVI	GTATCC	1 cut(s)	699
BcnI	CCSGG	1 cut(s)	84
BcoDI	GTCTC	1 cut(s)	684
BfmI	CTRYAG	1 cut(s)	162
BfuAI	ACCTGC	2 cut(s)	533, 610
BfuI	GTATCC	1 cut(s)	699
BisI	GCNGC	2 cut(s)	6, 872
BlsI	GCNGC	2 cut(s)	7, 873
Bme1390I	CCNGG	1 cut(s)	84
BmrFI	CCNGG	1 cut(s)	84
BmsI	GCATC	4 cut(s)	432, 484, 592, 673
BpmI	CTGGAG	3 cut(s)	56, 330, 708
Bpu10I	CCTNAGC	1 cut(s)	540
Bpu14I	TTCGAA	1 cut(s)	303
BpuMI	CCSGG	1 cut(s)	84
BsaI	GGTCTC	1 cut(s)	684
BsaJI	CCNNGG	1 cut(s)	720
BsaWI	WCCGGW	1 cut(s)	27
BsaXI	ACNNNNNCTCC	4 cut(s)	362, 392, 528, 558
Bsc4I	CCNNNNNNNGG	3 cut(s)	34, 65, 388
Bse1I	ACTGG	2 cut(s)	333, 399
BseDI	CCNNGG	1 cut(s)	720
BseGI	GGATG	2 cut(s)	286, 447
BseLI	CCNNNNNNNGG	3 cut(s)	34, 65, 388
BseMII	CTCAG	2 cut(s)	183, 531
BseNI	ACTGG	2 cut(s)	333, 399
BseRI	GAGGAG	1 cut(s)	53
BseYI	CCCAGC	1 cut(s)	455
BshFI	GGCC	1 cut(s)	82
BsiSI	CCGG	2 cut(s)	28, 83
BslI	CCNNNNNNNGG	3 cut(s)	34, 65, 388
BsmAI	GTCTC	1 cut(s)	684
BsnI	GGCC	1 cut(s)	82
Bso31I	GGTCTC	1 cut(s)	684
Bsp119I	TTCGAA	1 cut(s)	303
Bsp143I	GATC	1 cut(s)	195
BspACI	CCGC	5 cut(s)	5, 278, 293, 703, 871
BspANI	GGCC	1 cut(s)	82
BspCNI	CTCAG	2 cut(s)	184, 532
BspMI	ACCTGC	2 cut(s)	533, 610
BspT104I	TTCGAA	1 cut(s)	303
BspTNI	GGTCTC	1 cut(s)	684
BsrI	ACTGG	2 cut(s)	333, 399
BssECI	CCNNGG	1 cut(s)	720
BssMI	GATC	1 cut(s)	195
BssT1I	CCWWGG	1 cut(s)	720
Bst4CI	ACNGT	1 cut(s)	841
BstBI	TTCGAA	1 cut(s)	303
BstC8I	GCNNGC	3 cut(s)	452, 530, 617
BstDEI	CTNAG	2 cut(s)	192, 540
BstF5I	GGATG	2 cut(s)	286, 447
BstHHI	GCGC	1 cut(s)	828
BstKTI	GATC	1 cut(s)	198
BstMAI	GTCTC	1 cut(s)	684
BstMBI	GATC	1 cut(s)	195
BstMWI	GCNNNNNNNGC	3 cut(s)	451, 456, 709
BstSCI	CCNGG	1 cut(s)	82
BstSFI	CTRYAG	1 cut(s)	162
BsuI	GTATCC	1 cut(s)	699
BsuRI	GGCC	1 cut(s)	82
BtsCI	GGATG	2 cut(s)	286, 447
BtsIMutI	CAGTG	1 cut(s)	837
BveI	ACCTGC	2 cut(s)	533, 610
Cac8I	GCNNGC	3 cut(s)	452, 530, 617
CfoI	GCGC	1 cut(s)	828
Csp6I	GTAC	3 cut(s)	13, 316, 744
CviQI	GTAC	3 cut(s)	13, 316, 744
DdeI	CTNAG	2 cut(s)	192, 540
DpnI	GATC	1 cut(s)	197
DpnII	GATC	1 cut(s)	195
EaeI	YGGCCR	1 cut(s)	80
EciI	GGCGGA	2 cut(s)	293, 718
Eco130I	CCWWGG	1 cut(s)	720
Eco31I	GGTCTC	1 cut(s)	684
Eco57I	CTGAAG	1 cut(s)	124
EcoT14I	CCWWGG	1 cut(s)	720
ErhI	CCWWGG	1 cut(s)	720
FblI	GTMKAC	1 cut(s)	336
Fnu4HI	GCNGC	2 cut(s)	6, 872
FokI	GGATG	2 cut(s)	293, 454
Fsp4HI	GCNGC	2 cut(s)	6, 872
FspI	TGCGCA	1 cut(s)	827
GlaI	GCGC	1 cut(s)	827
GluI	GCNGC	2 cut(s)	6, 872
GsaI	CCCAGC	1 cut(s)	459
GsuI	CTGGAG	3 cut(s)	56, 330, 708
HaeIII	GGCC	1 cut(s)	82
HapII	CCGG	2 cut(s)	28, 83
HhaI	GCGC	1 cut(s)	828
Hin6I	GCGC	1 cut(s)	826
HinP1I	GCGC	1 cut(s)	826
HincII	GTYRAC	1 cut(s)	651
HindII	GTYRAC	1 cut(s)	651
HindIII	AAGCTT	1 cut(s)	467
HinfI	GANTC	2 cut(s)	215, 348
HpaII	CCGG	2 cut(s)	28, 83
HphI	GGTGA	1 cut(s)	210
Hpy166II	GTNNAC	5 cut(s)	183, 337, 651, 819, 835
Hpy188I	TCNGA	3 cut(s)	193, 206, 214
Hpy188III	TCNNGA	4 cut(s)	142, 352, 625, 763
Hpy8I	GTNNAC	5 cut(s)	183, 337, 651, 819, 835
Hpy99I	CGWCG	1 cut(s)	864
HpyAV	CCTTC	1 cut(s)	622
HpyCH4III	ACNGT	1 cut(s)	841
HpyCH4V	TGCA	1 cut(s)	615
HpyF10VI	GCNNNNNNNGC	3 cut(s)	451, 456, 709
HpyF3I	CTNAG	2 cut(s)	192, 540
HspAI	GCGC	1 cut(s)	826
Kzo9I	GATC	1 cut(s)	195
LmnI	GCTCC	1 cut(s)	536
LweI	GCATC	4 cut(s)	432, 484, 592, 673
MalI	GATC	1 cut(s)	197
MboI	GATC	1 cut(s)	195
MluCI	AATT	6 cut(s)	207, 247, 421, 485, 637, 786
MseI	TTAA	1 cut(s)	633
MslI	CAYNNNNRTG	1 cut(s)	527
MspI	CCGG	2 cut(s)	28, 83
MspR9I	CCNGG	1 cut(s)	84
MwoI	GCNNNNNNNGC	3 cut(s)	451, 456, 709
NciI	CCSGG	1 cut(s)	84
NdeII	GATC	1 cut(s)	195
NsbI	TGCGCA	1 cut(s)	827
NspV	TTCGAA	1 cut(s)	303
OliI	CACNNNNGTG	1 cut(s)	527
PaqCI	CACCTGC	1 cut(s)	533
PfeI	GAWTC	2 cut(s)	215, 348
PflMI	CCANNNNNTGG	1 cut(s)	65
PkrI	GCNGC	2 cut(s)	7, 873
PspFI	CCCAGC	1 cut(s)	455
RsaI	GTAC	3 cut(s)	14, 317, 745
RsaNI	GTAC	3 cut(s)	13, 316, 744
RseI	CAYNNNNRTG	1 cut(s)	527
SaqAI	TTAA	1 cut(s)	633
SatI	GCNGC	2 cut(s)	6, 872
Sau3AI	GATC	1 cut(s)	195
ScrFI	CCNGG	1 cut(s)	84
SfaNI	GCATC	4 cut(s)	432, 484, 592, 673
SfcI	CTRYAG	1 cut(s)	162
SfuI	TTCGAA	1 cut(s)	303
SmiMI	CAYNNNNRTG	1 cut(s)	527
Sse9I	AATT	6 cut(s)	207, 247, 421, 485, 637, 786
SsiI	CCGC	5 cut(s)	5, 278, 293, 703, 871
SspI	AATATT	2 cut(s)	662, 807
StyD4I	CCNGG	1 cut(s)	82
StyI	CCWWGG	1 cut(s)	720
TaaI	ACNGT	1 cut(s)	841
TaqI	TCGA	4 cut(s)	134, 153, 303, 681
TasI	AATT	6 cut(s)	207, 247, 421, 485, 637, 786
TauI	GCSGC	2 cut(s)	8, 874
TfiI	GAWTC	2 cut(s)	215, 348
Tru1I	TTAA	1 cut(s)	633
Tru9I	TTAA	1 cut(s)	633
TscAI	CASTG	1 cut(s)	844
TspDTI	ATGAA	4 cut(s)	303, 420, 672, 870
TspRI	CASTG	1 cut(s)	844
Van91I	CCANNNNNTGG	1 cut(s)	65
XapI	RAATTY	5 cut(s)	207, 247, 421, 485, 637
XmiI	GTMKAC	1 cut(s)	336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.