MD13G1149600.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0016694
Physical Location & Seq
Forward (+)
11744162 .. 11744431
270 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1149600.v1.1.491

Sequence Viewer

Length: 270 bp
ATGTGCGCAGCGAGGTGGTACTCCTCGGCTTTCAGCTGGCTGGATTTCGATTTCTCCATGCCCTGGTTAGGAATATTCCGGTGGTCGTGGACCGGAATATTCGACCTCTCGTACTTCACTTCTGGGTGGAGTTTGAACTTGCAGAGCGTCGGAGGGTTCAGCTTCTCGATACTCGATGATGTGGTGTGGACGTTGATAACTGTGGTGGAGTCTTTTGCCTTGGCCTGTATGCTTTGCTTCTTCTTTCTCTTTTGTGGTTGTACCCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

90

Amino Acids

10.27

Weight (kDa)

4.05

Isoelectric Point (pI)

54.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016694)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G49525
fragaria_vesca FvH4_4g20450
malus_domestica MD13G1149600.v1.1 MD16G1149900.v1.1
prunus_persica Prupe.1G113600_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0425921
rosa_laevigata RLG00000007331
rosa_multiflora Rmu_ssc0000281.1_g000026
rosa_roxburghii Rroxscaffold_5G00367940
rosa_rugosa Rorug04G0207100
rosa_samantha Rh4BG270200 Rh4CG282800 Rh4DG266600
rosa_wichuraiana Rw4G022820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 7
AccB7I CCANNNNNTGG 1 cut(s) 63
AfaI GTAC 3 cut(s) 20, 113, 262
AfiI CCNNNNNNNGG 2 cut(s) 63, 68
AgsI TTSAA 1 cut(s) 136
AjnI CCWGG 1 cut(s) 62
AluBI AGCT 2 cut(s) 36, 162
AluI AGCT 2 cut(s) 36, 162
AoxI GGCC 1 cut(s) 222
ApeKI GCWGC 1 cut(s) 8
AspLEI GCGC 1 cut(s) 8
AspS9I GGNCC 1 cut(s) 90
AvaII GGWCC 1 cut(s) 90
BbvI GCAGC 1 cut(s) 20
BciT130I CCWGG 1 cut(s) 64
BisI GCNGC 1 cut(s) 9
BlsI GCNGC 1 cut(s) 10
Bme1390I CCNGG 1 cut(s) 64
Bme18I GGWCC 1 cut(s) 90
BmgT120I GGNCC 1 cut(s) 90
BmrFI CCNGG 1 cut(s) 64
BsaJI CCNNGG 3 cut(s) 24, 62, 219
BsaWI WCCGGW 2 cut(s) 78, 92
Bsc4I CCNNNNNNNGG 2 cut(s) 63, 68
BseBI CCWGG 1 cut(s) 64
BseDI CCNNGG 3 cut(s) 24, 62, 219
BseLI CCNNNNNNNGG 2 cut(s) 63, 68
BseRI GAGGAG 1 cut(s) 13
BseXI GCAGC 1 cut(s) 20
BshFI GGCC 1 cut(s) 224
BsiSI CCGG 2 cut(s) 79, 93
BslI CCNNNNNNNGG 2 cut(s) 63, 68
BsnI GGCC 1 cut(s) 224
BspANI GGCC 1 cut(s) 224
BssECI CCNNGG 3 cut(s) 24, 62, 219
BssT1I CCWWGG 1 cut(s) 219
Bst2UI CCWGG 1 cut(s) 64
Bst4CI ACNGT 1 cut(s) 202
BstC8I GCNNGC 1 cut(s) 38
BstHHI GCGC 1 cut(s) 8
BstNI CCWGG 1 cut(s) 64
BstSCI CCNGG 1 cut(s) 62
BstV1I GCAGC 1 cut(s) 20
BsuRI GGCC 1 cut(s) 224
Cac8I GCNNGC 1 cut(s) 38
CfoI GCGC 1 cut(s) 8
Cfr13I GGNCC 1 cut(s) 90
CseI GACGC 1 cut(s) 136
Csp6I GTAC 3 cut(s) 19, 112, 261
CviAII CATG 1 cut(s) 58
CviJI RGCY 5 cut(s) 29, 36, 40, 162, 224
CviKI_1 RGCY 5 cut(s) 29, 36, 40, 162, 224
CviQI GTAC 3 cut(s) 19, 112, 261
Eco130I CCWWGG 1 cut(s) 219
Eco47I GGWCC 1 cut(s) 90
EcoRII CCWGG 1 cut(s) 62
EcoT14I CCWWGG 1 cut(s) 219
ErhI CCWWGG 1 cut(s) 219
FaeI CATG 1 cut(s) 61
FaiI YATR 2 cut(s) 59, 230
FatI CATG 1 cut(s) 57
Fnu4HI GCNGC 1 cut(s) 9
Fsp4HI GCNGC 1 cut(s) 9
FspI TGCGCA 1 cut(s) 7
GlaI GCGC 1 cut(s) 7
GluI GCNGC 1 cut(s) 9
HaeIII GGCC 1 cut(s) 224
HapII CCGG 2 cut(s) 79, 93
HgaI GACGC 1 cut(s) 136
HhaI GCGC 1 cut(s) 8
Hin1II CATG 1 cut(s) 61
Hin6I GCGC 1 cut(s) 6
HinP1I GCGC 1 cut(s) 6
HinfI GANTC 1 cut(s) 209
HpaII CCGG 2 cut(s) 79, 93
Hpy166II GTNNAC 2 cut(s) 90, 189
Hpy188I TCNGA 1 cut(s) 152
Hpy188III TCNNGA 1 cut(s) 166
Hpy8I GTNNAC 2 cut(s) 90, 189
Hpy99I CGWCG 1 cut(s) 152
HpyCH4III ACNGT 1 cut(s) 202
HpyCH4IV ACGT 1 cut(s) 191
HpyCH4V TGCA 1 cut(s) 142
HpySE526I ACGT 1 cut(s) 191
Hsp92II CATG 1 cut(s) 61
HspAI GCGC 1 cut(s) 6
LpnPI CCDG 8 cut(s) 22, 26, 49, 76, 92, 106, 108, 238
Lsp1109I GCAGC 1 cut(s) 20
MaeII ACGT 1 cut(s) 191
MboII GAAGA 1 cut(s) 232
MlyI GAGTC 1 cut(s) 218
MmeI TCCRAC 1 cut(s) 130
MnlI CCTC 4 cut(s) 6, 34, 116, 146
MspA1I CMGCKG 1 cut(s) 36
MspI CCGG 2 cut(s) 79, 93
MspR9I CCNGG 1 cut(s) 64
MvaI CCWGG 1 cut(s) 64
NlaIII CATG 1 cut(s) 61
NmeAIII GCCGAG 1 cut(s) 5
NsbI TGCGCA 1 cut(s) 7
PflMI CCANNNNNTGG 1 cut(s) 63
PkrI GCNGC 1 cut(s) 10
PleI GAGTC 1 cut(s) 217
PpsI GAGTC 1 cut(s) 217
Psp6I CCWGG 1 cut(s) 62
PspGI CCWGG 1 cut(s) 62
PspPI GGNCC 1 cut(s) 90
PvuII CAGCTG 1 cut(s) 36
RsaI GTAC 3 cut(s) 20, 113, 262
RsaNI GTAC 3 cut(s) 19, 112, 261
SatI GCNGC 1 cut(s) 9
Sau96I GGNCC 1 cut(s) 90
SchI GAGTC 1 cut(s) 218
ScrFI CCNGG 1 cut(s) 64
SetI ASST 5 cut(s) 17, 38, 108, 164, 194
SinI GGWCC 1 cut(s) 90
SspI AATATT 2 cut(s) 75, 99
StyD4I CCNGG 1 cut(s) 62
StyI CCWWGG 1 cut(s) 219
TaaI ACNGT 1 cut(s) 202
TaiI ACGT 1 cut(s) 194
TaqI TCGA 4 cut(s) 48, 102, 167, 174
TseI GCWGC 1 cut(s) 8
Van91I CCANNNNNTGG 1 cut(s) 63
VpaK11BI GGWCC 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.