Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0016694

Physical Location & Seq

Genomic Coordinates Reverse (-)

54042619 .. 54043287

Gene Structure 669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG282800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGCGGCGTGGTACTCCACAGCTTTCCGGTGGCTGGAGGAGTTAGATTTCTCGTTGCCATCAGCTGGAAGTTTCAGGTGGCCGGGAGTGTTTGATTTCTCCTACTTTACTTCGGGGTGGAACTTGAACTTGTCGAGCTTCAGGATATGGTTCGATTTTTCTATAGTTGATGATGTGCTGTGGACCTTGGTGACTGTGGTGGAGTCCTTAGTTTTGGCTGCCATGCTCTGCTTCTTCTTTCTCTTCTGTGGTTCATTGGCTTTGGAATCTGGAAGAAATCAACATTTTCCGGCTAGCTCTTTAGCAGCTGTGTTCAAATTTGCTTCAGAATTTTGTGAAGGTTTAGTTCTGGAGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

119

Amino Acids

13.53

Weight (kDa)

4.3

Isoelectric Point (pI)

37.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0016694)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49525
fragaria_vesca	FvH4_4g20450
malus_domestica	MD13G1149600.v1.1 MD16G1149900.v1.1
prunus_persica	Prupe.1G113600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0425921
rosa_laevigata	RLG00000007331
rosa_multiflora	Rmu_ssc0000281.1_g000026
rosa_roxburghii	Rroxscaffold_5G00367940
rosa_rugosa	Rorug04G0207100
rosa_samantha	Rh4BG270200 Rh4CG282800 Rh4DG266600
rosa_wichuraiana	Rw4G022820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	65
AciI	CCGC	1 cut(s)	5
AcoI	YGGCCR	1 cut(s)	80
AcsI	RAATTY	2 cut(s)	317, 329
AcuI	CTGAAG	2 cut(s)	124, 309
AfaI	GTAC	1 cut(s)	14
AfiI	CCNNNNNNNGG	2 cut(s)	34, 65
AgsI	TTSAA	2 cut(s)	127, 316
AluBI	AGCT	5 cut(s)	23, 65, 138, 297, 308
AluI	AGCT	5 cut(s)	23, 65, 138, 297, 308
AoxI	GGCC	1 cut(s)	80
ApeKI	GCWGC	2 cut(s)	218, 305
ApoI	RAATTY	2 cut(s)	317, 329
AspS9I	GGNCC	1 cut(s)	183
AsuC2I	CCSGG	1 cut(s)	84
AsuHPI	GGTGA	1 cut(s)	202
AsuNHI	GCTAGC	1 cut(s)	293
AvaII	GGWCC	1 cut(s)	183
BbvI	GCAGC	2 cut(s)	205, 317
BccI	CCATC	1 cut(s)	67
BcnI	CCSGG	1 cut(s)	84
BfaI	CTAG	1 cut(s)	294
BfmI	CTRYAG	1 cut(s)	162
BisI	GCNGC	3 cut(s)	6, 219, 306
BlsI	GCNGC	3 cut(s)	7, 220, 307
Bme1390I	CCNGG	1 cut(s)	84
Bme18I	GGWCC	1 cut(s)	183
BmgT120I	GGNCC	1 cut(s)	183
BmrFI	CCNGG	1 cut(s)	84
BmtI	GCTAGC	1 cut(s)	297
BpmI	CTGGAG	1 cut(s)	56
BpuMI	CCSGG	1 cut(s)	84
BsaJI	CCNNGG	1 cut(s)	186
BsaWI	WCCGGW	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	2 cut(s)	34, 65
BseDI	CCNNGG	1 cut(s)	186
BseLI	CCNNNNNNNGG	2 cut(s)	34, 65
BseRI	GAGGAG	1 cut(s)	53
BseXI	GCAGC	2 cut(s)	205, 317
BshFI	GGCC	1 cut(s)	82
BsiSI	CCGG	3 cut(s)	28, 83, 290
BslI	CCNNNNNNNGG	2 cut(s)	34, 65
BsnI	GGCC	1 cut(s)	82
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	1 cut(s)	82
BspOI	GCTAGC	1 cut(s)	297
BssECI	CCNNGG	1 cut(s)	186
BssT1I	CCWWGG	1 cut(s)	186
Bst4CI	ACNGT	1 cut(s)	196
Bst6I	CTCTTC	1 cut(s)	248
BstC8I	GCNNGC	1 cut(s)	295
BstDEI	CTNAG	1 cut(s)	208
BstSCI	CCNGG	1 cut(s)	82
BstSFI	CTRYAG	1 cut(s)	162
BstV1I	GCAGC	2 cut(s)	205, 317
BsuRI	GGCC	1 cut(s)	82
Cac8I	GCNNGC	1 cut(s)	295
Cfr13I	GGNCC	1 cut(s)	183
Csp6I	GTAC	1 cut(s)	13
CviAII	CATG	1 cut(s)	223
CviQI	GTAC	1 cut(s)	13
DdeI	CTNAG	1 cut(s)	208
EaeI	YGGCCR	1 cut(s)	80
Eam1104I	CTCTTC	1 cut(s)	248
EarI	CTCTTC	1 cut(s)	248
Eco130I	CCWWGG	1 cut(s)	186
Eco47I	GGWCC	1 cut(s)	183
Eco57I	CTGAAG	2 cut(s)	124, 309
EcoT14I	CCWWGG	1 cut(s)	186
ErhI	CCWWGG	1 cut(s)	186
FaeI	CATG	1 cut(s)	226
FaiI	YATR	3 cut(s)	148, 164, 224
FatI	CATG	1 cut(s)	222
Fnu4HI	GCNGC	3 cut(s)	6, 219, 306
Fsp4HI	GCNGC	3 cut(s)	6, 219, 306
FspBI	CTAG	1 cut(s)	294
GluI	GCNGC	3 cut(s)	6, 219, 306
GsuI	CTGGAG	1 cut(s)	56
HaeIII	GGCC	1 cut(s)	82
HapII	CCGG	3 cut(s)	28, 83, 290
Hin1II	CATG	1 cut(s)	226
HinfI	GANTC	2 cut(s)	203, 266
HpaII	CCGG	3 cut(s)	28, 83, 290
HphI	GGTGA	1 cut(s)	202
Hpy166II	GTNNAC	1 cut(s)	183
Hpy188I	TCNGA	1 cut(s)	328
Hpy188III	TCNNGA	3 cut(s)	142, 270, 350
Hpy8I	GTNNAC	1 cut(s)	183
HpyAV	CCTTC	1 cut(s)	332
HpyCH4III	ACNGT	1 cut(s)	196
HpyF3I	CTNAG	1 cut(s)	208
Hsp92II	CATG	1 cut(s)	226
LpnPI	CCDG	9 cut(s)	20, 41, 51, 61, 96, 127, 255, 303, 335
Lsp1109I	GCAGC	2 cut(s)	205, 317
MaeI	CTAG	1 cut(s)	294
MaeIII	GTNAC	1 cut(s)	190
MboII	GAAGA	3 cut(s)	226, 235, 285
MluCI	AATT	2 cut(s)	317, 329
MlyI	GAGTC	1 cut(s)	212
MnlI	CCTC	2 cut(s)	31, 346
MseI	TTAA	1 cut(s)	358
MspA1I	CMGCKG	2 cut(s)	65, 308
MspI	CCGG	3 cut(s)	28, 83, 290
MspR9I	CCNGG	1 cut(s)	84
NciI	CCSGG	1 cut(s)	84
NheI	GCTAGC	1 cut(s)	293
NlaIII	CATG	1 cut(s)	226
NmuCI	GTSAC	1 cut(s)	190
PfeI	GAWTC	1 cut(s)	266
PflMI	CCANNNNNTGG	1 cut(s)	65
PkrI	GCNGC	3 cut(s)	7, 220, 307
PleI	GAGTC	1 cut(s)	211
PpsI	GAGTC	1 cut(s)	211
PspPI	GGNCC	1 cut(s)	183
PvuII	CAGCTG	2 cut(s)	65, 308
RsaI	GTAC	1 cut(s)	14
RsaNI	GTAC	1 cut(s)	13
SaqAI	TTAA	1 cut(s)	358
SatI	GCNGC	3 cut(s)	6, 219, 306
Sau96I	GGNCC	1 cut(s)	183
SchI	GAGTC	1 cut(s)	212
ScrFI	CCNGG	1 cut(s)	84
SetI	ASST	9 cut(s)	25, 67, 80, 140, 188, 299, 310, 343, 357
SfcI	CTRYAG	1 cut(s)	162
SinI	GGWCC	1 cut(s)	183
Sse9I	AATT	2 cut(s)	317, 329
SsiI	CCGC	1 cut(s)	5
SspMI	CTAG	1 cut(s)	294
StyD4I	CCNGG	1 cut(s)	82
StyI	CCWWGG	1 cut(s)	186
TaaI	ACNGT	1 cut(s)	196
TaqI	TCGA	2 cut(s)	134, 153
TasI	AATT	2 cut(s)	317, 329
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	266
Tru1I	TTAA	1 cut(s)	358
Tru9I	TTAA	1 cut(s)	358
TseFI	GTSAC	1 cut(s)	190
TseI	GCWGC	2 cut(s)	218, 305
Tsp45I	GTSAC	1 cut(s)	190
TspDTI	ATGAA	1 cut(s)	243
Van91I	CCANNNNNTGG	1 cut(s)	65
VpaK11BI	GGWCC	1 cut(s)	183
XapI	RAATTY	2 cut(s)	317, 329
XspI	CTAG	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.