FvH4_4g20450

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0016694
Physical Location & Seq
Reverse (-)
23712332 .. 23712595
264 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g20450.t1

Sequence Viewer

Length: 264 bp
ATGGCGGCGTGGTTCTCCACAGCTTTCCGGTGGCTGGAAGAGCTGGATCTCTCGTTGCCGTCAGCTGGAAGTTTCAGGTGGCCGGGAGTGTTTGATTTCTCCTACTTTACTACGGGGTGGAACTTGAACTTTTCGAGCTTCAGGATATGGTTTAATTTTTCGATAGTTGATGATGTGCTGTGGACCTTGGTGACTGTGGTGGAGTCCTTGGCTTTGGCTGCCATGCTCTGCTTCTTCTTCCTCTTCTGTGGTTGTACTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

88

Amino Acids

10.08

Weight (kDa)

4.14

Isoelectric Point (pI)

38.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016694)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G49525
fragaria_vesca FvH4_4g20450
malus_domestica MD13G1149600.v1.1 MD16G1149900.v1.1
prunus_persica Prupe.1G113600_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0425921
rosa_laevigata RLG00000007331
rosa_multiflora Rmu_ssc0000281.1_g000026
rosa_roxburghii Rroxscaffold_5G00367940
rosa_rugosa Rorug04G0207100
rosa_samantha Rh4BG270200 Rh4CG282800 Rh4DG266600
rosa_wichuraiana Rw4G022820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 5
AclWI GGATC 1 cut(s) 54
AcoI YGGCCR 1 cut(s) 80
AcuI CTGAAG 1 cut(s) 124
AfaI GTAC 1 cut(s) 256
AfiI CCNNNNNNNGG 2 cut(s) 34, 65
AgsI TTSAA 1 cut(s) 127
AluBI AGCT 4 cut(s) 23, 43, 65, 138
AluI AGCT 4 cut(s) 23, 43, 65, 138
AlwI GGATC 1 cut(s) 54
AoxI GGCC 1 cut(s) 80
ApeKI GCWGC 1 cut(s) 218
AspS9I GGNCC 1 cut(s) 183
AsuC2I CCSGG 1 cut(s) 84
AsuHPI GGTGA 1 cut(s) 202
AvaII GGWCC 1 cut(s) 183
BbvI GCAGC 1 cut(s) 205
BceAI ACGGC 1 cut(s) 43
BcnI CCSGG 1 cut(s) 84
BisI GCNGC 2 cut(s) 6, 219
BlsI GCNGC 2 cut(s) 7, 220
Bme1390I CCNGG 1 cut(s) 84
Bme18I GGWCC 1 cut(s) 183
BmgT120I GGNCC 1 cut(s) 183
BmrFI CCNGG 1 cut(s) 84
BpuMI CCSGG 1 cut(s) 84
BsaJI CCNNGG 2 cut(s) 186, 207
BsaWI WCCGGW 1 cut(s) 27
Bsc4I CCNNNNNNNGG 2 cut(s) 34, 65
BseDI CCNNGG 2 cut(s) 186, 207
BseLI CCNNNNNNNGG 2 cut(s) 34, 65
BseXI GCAGC 1 cut(s) 205
BshFI GGCC 1 cut(s) 82
BsiSI CCGG 2 cut(s) 28, 83
BslI CCNNNNNNNGG 2 cut(s) 34, 65
BsnI GGCC 1 cut(s) 82
Bsp143I GATC 1 cut(s) 46
BspACI CCGC 1 cut(s) 5
BspANI GGCC 1 cut(s) 82
BspPI GGATC 1 cut(s) 54
BspQI GCTCTTC 1 cut(s) 33
BssECI CCNNGG 2 cut(s) 186, 207
BssMI GATC 1 cut(s) 46
BssT1I CCWWGG 2 cut(s) 186, 207
Bst4CI ACNGT 1 cut(s) 196
Bst6I CTCTTC 2 cut(s) 33, 248
BstKTI GATC 1 cut(s) 49
BstMBI GATC 1 cut(s) 46
BstMWI GCNNNNNNNGC 2 cut(s) 40, 218
BstSCI CCNGG 1 cut(s) 82
BstV1I GCAGC 1 cut(s) 205
BstX2I RGATCY 1 cut(s) 46
BstYI RGATCY 1 cut(s) 46
BsuRI GGCC 1 cut(s) 82
Cfr13I GGNCC 1 cut(s) 183
Csp6I GTAC 1 cut(s) 255
CviAII CATG 1 cut(s) 223
CviJI RGCY 8 cut(s) 23, 34, 43, 65, 82, 138, 212, 218
CviKI_1 RGCY 8 cut(s) 23, 34, 43, 65, 82, 138, 212, 218
CviQI GTAC 1 cut(s) 255
DpnI GATC 1 cut(s) 48
DpnII GATC 1 cut(s) 46
EaeI YGGCCR 1 cut(s) 80
Eam1104I CTCTTC 2 cut(s) 33, 248
EarI CTCTTC 2 cut(s) 33, 248
Eco130I CCWWGG 2 cut(s) 186, 207
Eco47I GGWCC 1 cut(s) 183
Eco57I CTGAAG 1 cut(s) 124
EcoT14I CCWWGG 2 cut(s) 186, 207
ErhI CCWWGG 2 cut(s) 186, 207
FaeI CATG 1 cut(s) 226
FaiI YATR 2 cut(s) 148, 224
FatI CATG 1 cut(s) 222
Fnu4HI GCNGC 2 cut(s) 6, 219
Fsp4HI GCNGC 2 cut(s) 6, 219
GluI GCNGC 2 cut(s) 6, 219
HaeIII GGCC 1 cut(s) 82
HapII CCGG 2 cut(s) 28, 83
Hin1II CATG 1 cut(s) 226
HinfI GANTC 1 cut(s) 203
HpaII CCGG 2 cut(s) 28, 83
HphI GGTGA 1 cut(s) 202
Hpy166II GTNNAC 1 cut(s) 183
Hpy188I TCNGA 1 cut(s) 263
Hpy188III TCNNGA 1 cut(s) 142
Hpy8I GTNNAC 1 cut(s) 183
HpyCH4III ACNGT 1 cut(s) 196
HpyF10VI GCNNNNNNNGC 2 cut(s) 40, 218
Hsp92II CATG 1 cut(s) 226
Kzo9I GATC 1 cut(s) 46
LguI GCTCTTC 1 cut(s) 33
LpnPI CCDG 7 cut(s) 20, 29, 41, 51, 61, 96, 127
Lsp1109I GCAGC 1 cut(s) 205
MaeIII GTNAC 1 cut(s) 190
MalI GATC 1 cut(s) 48
MboI GATC 1 cut(s) 46
MboII GAAGA 4 cut(s) 50, 226, 229, 235
MflI RGATCY 1 cut(s) 46
MluCI AATT 1 cut(s) 154
MlyI GAGTC 1 cut(s) 212
MnlI CCTC 1 cut(s) 251
MseI TTAA 1 cut(s) 153
MspA1I CMGCKG 1 cut(s) 65
MspI CCGG 2 cut(s) 28, 83
MspR9I CCNGG 1 cut(s) 84
MwoI GCNNNNNNNGC 2 cut(s) 40, 218
NciI CCSGG 1 cut(s) 84
NdeII GATC 1 cut(s) 46
NlaIII CATG 1 cut(s) 226
NmuCI GTSAC 1 cut(s) 190
PciSI GCTCTTC 1 cut(s) 33
PkrI GCNGC 2 cut(s) 7, 220
PleI GAGTC 1 cut(s) 211
PpsI GAGTC 1 cut(s) 211
PspPI GGNCC 1 cut(s) 183
PsuI RGATCY 1 cut(s) 46
PvuII CAGCTG 1 cut(s) 65
RsaI GTAC 1 cut(s) 256
RsaNI GTAC 1 cut(s) 255
SapI GCTCTTC 1 cut(s) 33
SaqAI TTAA 1 cut(s) 153
SatI GCNGC 2 cut(s) 6, 219
Sau3AI GATC 1 cut(s) 46
Sau96I GGNCC 1 cut(s) 183
SchI GAGTC 1 cut(s) 212
ScrFI CCNGG 1 cut(s) 84
SetI ASST 6 cut(s) 25, 45, 67, 80, 140, 188
SinI GGWCC 1 cut(s) 183
Sse9I AATT 1 cut(s) 154
SsiI CCGC 1 cut(s) 5
StyD4I CCNGG 1 cut(s) 82
StyI CCWWGG 2 cut(s) 186, 207
TaaI ACNGT 1 cut(s) 196
TaqI TCGA 2 cut(s) 134, 161
TasI AATT 1 cut(s) 154
TatI WGTACW 1 cut(s) 254
TauI GCSGC 1 cut(s) 8
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TseFI GTSAC 1 cut(s) 190
TseI GCWGC 1 cut(s) 218
Tsp45I GTSAC 1 cut(s) 190
VpaK11BI GGWCC 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.