AT5G50900

Armadillo beta-catenin repeat family protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
20704724 .. 20706842
2119 bp
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UTR
Exon/CDS
Intron
AT5G50900.1

Sequence Viewer

Length: 1668 bp
ATGACGGTACCTAATTCCGACGATGGTGACCGGAGTTTAACGGAGGTTATCACCTCTCTTATCGACTCTATACCCAACCTTCTTAGCTTCAAGTGTAAATGGTCATCAATTCGCGCCAAACTCGCCGATCTCAAAACTCAGCTCTCCGATTTCTCCGATTTCGCCGGCTCTTCTTCAAACAAACTCGCCGTAGATCTTCTAGTTTCAGTTCGCGAGACGCTAAACGACGCCGTTGCCGTTGCGGCGAGGTGTGAAGGACCAGATTTAGCTGAAGGTAAGCTTAAAACGCAGAGTGAGGTTGATTCAGTCATGGCGAGACTCGATCGTCATGTGAAAGATGCTGAGGTTTTGATTAAGAGTGGTCTTCTGATTGATAACGGAATCGTCGTTTCTGGATTTTCGATTTCGTCGAAGAAGGAAGCTGTTAGATTAGAAGCGAGGAATCTAGTGATTAGATTACAGATCGGTGGTGTTGAATCGAAGAATTCAGCGATTGATTCGTTGATTGAATTACTTCAGGAAGATGATAAGAACGTGATGATTTGTGTAGCTCAAGGAGTTGTTCCTGTTTTAGTTAGGTTACTTGATTCGTGTTCTTTAGTGATGAAGGAGAAGACTGTTGCTGTGATTTCTAGAATCTCTATGGTTGAGAGTAGTAAACACGTGTTAATAGCTGAAGGATTGTCTCTATTGAATCATCTCCTTCGTGTATTGGAGTCAGGAAGTGGTTTTGCTAAAGAGAAAGCTTGTGTTGCTTTGCAAGCTTTGAGTTTGTCTAAGGAGAACGCGAGAGCTATTGGTTGTAGAGGTGGAATCTCGTCTTTGTTGGAGATATGTCAAGGTGGGAGTCCTGGTTCTCAGGCTTTTGCTGCTGGTGTGTTGAGGAACTTAGCTTTGTTTGGAGAGACTAAAGAGAATTTCGTTGAGGAAAACGCGATTTTCGTGCTTATTAGTATGGTTTCTTCAGGTACTTCTTTGGCTCAAGAGAATGCTGTTGGTTGTTTGGCTAATTTAACGAGTGGTGATGAGGATTTGATGATATCTGTTGTTAGAGAAGGAGGGATTCAGTGTTTGAAGAGTTTTTGGGATTCTGTTTCTAGTGTTAAGAGTCTTGAGGTTGGAGTTGTGCTTCTGAAGAACTTAGCGTTGTGTCCTATTGTGAGAGAAGTTGTTATATCCGAAGGGTTTATCCCTCGTTTGGTTCCGGTTTTGAGTTGTGGGGTTCTCGGTGTGAGAATTGCAGCTGCGGAAGCTGTTTCCTCGCTAGGTTTCAGCTCGAAAAGCCGAAAAGAAATGGGTGAAAGTGGATGTATCGTTCCATTGATTGATATGTTAGATGGTAAAGCCATTGAAGAGAAAGAAGCAGCTTCTAAAGCTCTATCGACGCTTTTGGTGTGCACGAGTAACAGAAAGATTTTCAAGAAGAGTGACAAGGGTGTAGTCAGTCTAGTTCAGCTCTTGGACCCGAAGATTAAGAAATTGGATAAGCGGTACACAGTCTCGGCGTTGGAACTGCTTGTAACTTCAAAGAAATGCAGGAAACAAGTCGTAGCTGCTGGTGCTTGCTTGCATTTGCAAAAGCTTGTGGATATGGATACCGAAGGAGCTAAGAAACTGGCGGAGAATCTTTCCCGGAGTAAGATTTGGGGCGTCTTTACAAGGCCATAA

Protein Analysis

555

Amino Acids

59.27

Weight (kDa)

8.08

Isoelectric Point (pI)

30.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7032 PF23005 13 - 121 2.1e-33 Domain of unknown function (DUF7032)
ARM_ARMC5 PF24768 349 - 534 3.2e-07 ARMC5
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012216)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 324
Acc65I GGTACC 1 cut(s) 7
AccB1I GGYRCC 1 cut(s) 7
AccII CGCG 4 cut(s) 114, 213, 788, 935
AciI CCGC 4 cut(s) 242, 1247, 1489, 1619
AcsI RAATTY 2 cut(s) 484, 916
AcuI CTGAAG 5 cut(s) 291, 500, 696, 948, 1154
AcvI CACGTG 1 cut(s) 664
AcyI GRCGYC 2 cut(s) 228, 1650
AfaI GTAC 3 cut(s) 9, 970, 1493
AfiI CCNNNNNNNGG 1 cut(s) 1198
AflIII ACRYGT 2 cut(s) 661, 663
AgsI TTSAA 9 cut(s) 91, 177, 476, 509, 694, 1075, 1352, 1420, 1527
AjnI CCWGG 1 cut(s) 850
AloI GAACNNNNNNTCC 4 cut(s) 838, 870, 1299, 1331
Alw21I GWGCWC 1 cut(s) 1400
Alw26I GTCTC 5 cut(s) 209, 310, 690, 899, 1504
Alw44I GTGCAC 1 cut(s) 1396
AoxI GGCC 1 cut(s) 1661
ApaLI GTGCAC 1 cut(s) 1396
ApeKI GCWGC 5 cut(s) 869, 1241, 1244, 1364, 1553
ApoI RAATTY 2 cut(s) 484, 916
Asp700I GAANNNNTTC 1 cut(s) 513
Asp718I GGTACC 1 cut(s) 7
AspLEI GCGC 1 cut(s) 116
AspS9I GGNCC 2 cut(s) 257, 1462
AsuC2I CCSGG 1 cut(s) 1633
AsuHPI GGTGA 4 cut(s) 38, 43, 1034, 1310
AvaII GGWCC 2 cut(s) 257, 1462
BaeGI GKGCMC 1 cut(s) 1400
BanI GGYRCC 1 cut(s) 7
BarI GAAGNNNNNNTAC 2 cut(s) 946, 978
BauI CACGAG 1 cut(s) 1399
BbrPI CACGTG 1 cut(s) 664
BbsI GAAGAC 2 cut(s) 356, 620
Bbv12I GWGCWC 1 cut(s) 1400
BbvCI CCTCAGC 1 cut(s) 342
BbvI GCAGC 5 cut(s) 856, 1231, 1253, 1376, 1540
BccI CCATC 2 cut(s) 17, 1331
BceAI ACGGC 3 cut(s) 173, 215, 221
BcgI CGANNNNNNTGC 4 cut(s) 215, 249, 925, 959
BciT130I CCWGG 1 cut(s) 852
BciVI GTATCC 1 cut(s) 1588
BcnI CCSGG 1 cut(s) 1633
BcoDI GTCTC 5 cut(s) 209, 310, 690, 899, 1504
BfaI CTAG 6 cut(s) 200, 446, 633, 1098, 1265, 1448
BfuI GTATCC 1 cut(s) 1588
BglI GCCNNNNNGGC 1 cut(s) 242
BglII AGATCT 1 cut(s) 193
BisI GCNGC 6 cut(s) 243, 870, 1242, 1245, 1365, 1554
BlsI GCNGC 6 cut(s) 244, 871, 1243, 1246, 1366, 1555
Bme1390I CCNGG 2 cut(s) 852, 1633
Bme18I GGWCC 2 cut(s) 257, 1462
BmgT120I GGNCC 2 cut(s) 257, 1462
BmiI GGNNCC 3 cut(s) 9, 1203, 1464
BmrFI CCNGG 2 cut(s) 852, 1633
BmsI GCATC 1 cut(s) 328
BpiI GAAGAC 2 cut(s) 356, 620
Bpu10I CCTNAGC 1 cut(s) 342
BpuEI CTTGAG 3 cut(s) 537, 966, 1133
BpuMI CCSGG 1 cut(s) 1633
BsaAI YACGTR 1 cut(s) 664
BsaHI GRCGYC 2 cut(s) 228, 1650
BsaWI WCCGGW 2 cut(s) 30, 1204
BsaXI ACNNNNNCTCC 2 cut(s) 838, 868
Bsc4I CCNNNNNNNGG 1 cut(s) 1198
Bse118I RCCGGY 1 cut(s) 164
Bse1I ACTGG 1 cut(s) 1620
BseBI CCWGG 1 cut(s) 852
BseGI GGATG 1 cut(s) 1313
BseLI CCNNNNNNNGG 1 cut(s) 1198
BseMII CTCAG 3 cut(s) 152, 333, 872
BseNI ACTGG 1 cut(s) 1620
BseSI GKGCMC 1 cut(s) 1400
BseXI GCAGC 5 cut(s) 856, 1231, 1253, 1376, 1540
Bsh1236I CGCG 4 cut(s) 114, 213, 788, 935
Bsh1285I CGRYCG 1 cut(s) 325
BshFI GGCC 1 cut(s) 1663
BshNI GGYRCC 1 cut(s) 7
BsiEI CGRYCG 1 cut(s) 325
BsiHKAI GWGCWC 1 cut(s) 1400
BsiSI CCGG 4 cut(s) 31, 165, 1205, 1633
BslI CCNNNNNNNGG 1 cut(s) 1198
BsmAI GTCTC 5 cut(s) 209, 310, 690, 899, 1504
BsmBI CGTCTC 1 cut(s) 209
BsmI GAATGC 1 cut(s) 994
BsnI GGCC 1 cut(s) 1663
Bsp1286I GDGCHC 1 cut(s) 1400
Bsp143I GATC 4 cut(s) 127, 193, 322, 462
Bsp68I TCGCGA 1 cut(s) 213
BspACI CCGC 4 cut(s) 242, 1247, 1489, 1619
BspANI GGCC 1 cut(s) 1663
BspCNI CTCAG 3 cut(s) 151, 334, 871
BspFNI CGCG 4 cut(s) 114, 213, 788, 935
BspLI GGNNCC 3 cut(s) 9, 1203, 1464
BspQI GCTCTTC 1 cut(s) 175
BspT107I GGYRCC 1 cut(s) 7
BsrFI RCCGGY 1 cut(s) 164
BsrI ACTGG 1 cut(s) 1620
BssAI RCCGGY 1 cut(s) 164
BssMI GATC 4 cut(s) 127, 193, 322, 462
BssNI GRCGYC 2 cut(s) 228, 1650
BssSI CACGAG 1 cut(s) 1399
Bst2BI CACGAG 1 cut(s) 1399
Bst2UI CCWGG 1 cut(s) 852
Bst4CI ACNGT 3 cut(s) 7, 619, 1498
Bst6I CTCTTC 4 cut(s) 175, 1070, 1347, 1418
BstACI GRCGYC 2 cut(s) 228, 1650
BstBAI YACGTR 1 cut(s) 664
BstC8I GCNNGC 4 cut(s) 166, 762, 1564, 1568
BstDEI CTNAG 8 cut(s) 83, 138, 342, 777, 858, 889, 1141, 1608
BstEII GGTNACC 1 cut(s) 26
BstF5I GGATG 1 cut(s) 1313
BstFNI CGCG 4 cut(s) 114, 213, 788, 935
BstHHI GCGC 1 cut(s) 116
BstKTI GATC 4 cut(s) 130, 196, 325, 465
BstMAI GTCTC 5 cut(s) 209, 310, 690, 899, 1504
BstMBI GATC 4 cut(s) 127, 193, 322, 462
BstMCI CGRYCG 1 cut(s) 325
BstNI CCWGG 1 cut(s) 852
BstPI GGTNACC 1 cut(s) 26
BstSCI CCNGG 2 cut(s) 850, 1631
BstSLI GKGCMC 1 cut(s) 1400
BstUI CGCG 4 cut(s) 114, 213, 788, 935
BstV1I GCAGC 5 cut(s) 856, 1231, 1253, 1376, 1540
BstV2I GAAGAC 2 cut(s) 356, 620
BstX2I RGATCY 1 cut(s) 193
BstYI RGATCY 1 cut(s) 193
BsuI GTATCC 1 cut(s) 1588
BsuRI GGCC 1 cut(s) 1663
BtsCI GGATG 1 cut(s) 1313
BtsIMutI CAGTG 1 cut(s) 1073
BtuMI TCGCGA 1 cut(s) 213
Cac8I GCNNGC 4 cut(s) 166, 762, 1564, 1568
CfoI GCGC 1 cut(s) 116
Cfr10I RCCGGY 1 cut(s) 164
Cfr13I GGNCC 2 cut(s) 257, 1462
CseI GACGC 4 cut(s) 226, 236, 1393, 1639
Csp6I GTAC 3 cut(s) 8, 969, 1492
CviAII CATG 2 cut(s) 310, 329
CviQI GTAC 3 cut(s) 8, 969, 1492
DdeI CTNAG 8 cut(s) 83, 138, 342, 777, 858, 889, 1141, 1608
DpnI GATC 4 cut(s) 129, 195, 324, 464
DpnII GATC 4 cut(s) 127, 193, 322, 462
DrdI GACNNNNNNGTC 1 cut(s) 324
DseDI GACNNNNNNGTC 1 cut(s) 324
Eam1104I CTCTTC 4 cut(s) 175, 1070, 1347, 1418
EarI CTCTTC 4 cut(s) 175, 1070, 1347, 1418
EciI GGCGGA 1 cut(s) 1634
Eco32I GATATC 1 cut(s) 1041
Eco47I GGWCC 2 cut(s) 257, 1462
Eco57I CTGAAG 5 cut(s) 291, 500, 696, 948, 1154
Eco72I CACGTG 1 cut(s) 664
Eco91I GGTNACC 1 cut(s) 26
EcoO65I GGTNACC 1 cut(s) 26
EcoRI GAATTC 1 cut(s) 484
EcoRII CCWGG 1 cut(s) 850
EcoRV GATATC 1 cut(s) 1041
Esp3I CGTCTC 1 cut(s) 209
FaeI CATG 2 cut(s) 313, 332
FalI AAGNNNNNCTT 2 cut(s) 264, 296
FatI CATG 2 cut(s) 309, 328
Fnu4HI GCNGC 6 cut(s) 243, 870, 1242, 1245, 1365, 1554
FokI GGATG 1 cut(s) 1320
Fsp4HI GCNGC 6 cut(s) 243, 870, 1242, 1245, 1365, 1554
FspBI CTAG 6 cut(s) 200, 446, 633, 1098, 1265, 1448
GlaI GCGC 1 cut(s) 115
GluI GCNGC 6 cut(s) 243, 870, 1242, 1245, 1365, 1554
HaeIII GGCC 1 cut(s) 1663
HapII CCGG 4 cut(s) 31, 165, 1205, 1633
HgaI GACGC 4 cut(s) 226, 236, 1393, 1639
HhaI GCGC 1 cut(s) 116
Hin1I GRCGYC 2 cut(s) 228, 1650
Hin1II CATG 2 cut(s) 313, 332
Hin6I GCGC 1 cut(s) 114
HinP1I GCGC 1 cut(s) 114
HindIII AAGCTT 4 cut(s) 278, 744, 762, 1580
HpaII CCGG 4 cut(s) 31, 165, 1205, 1633
HphI GGTGA 4 cut(s) 38, 43, 1034, 1310
Hpy166II GTNNAC 3 cut(s) 659, 1398, 1494
Hpy188I TCNGA 6 cut(s) 19, 148, 157, 369, 1134, 1180
Hpy188III TCNNGA 8 cut(s) 212, 393, 518, 633, 720, 983, 1112, 1420
Hpy8I GTNNAC 3 cut(s) 659, 1398, 1494
Hpy99I CGWCG 5 cut(s) 23, 230, 389, 412, 1387
HpyCH4III ACNGT 3 cut(s) 7, 619, 1498
HpyCH4IV ACGT 2 cut(s) 534, 663
HpyCH4V TGCA 6 cut(s) 760, 1241, 1398, 1536, 1570, 1576
HpyF3I CTNAG 8 cut(s) 83, 138, 342, 777, 858, 889, 1141, 1608
HpySE526I ACGT 2 cut(s) 534, 663
Hsp92I GRCGYC 2 cut(s) 228, 1650
Hsp92II CATG 2 cut(s) 313, 332
HspAI GCGC 1 cut(s) 114
KpnI GGTACC 1 cut(s) 11
KroI GCCGGC 1 cut(s) 164
KroNI GCCGGC 1 cut(s) 166
Kzo9I GATC 4 cut(s) 127, 193, 322, 462
LguI GCTCTTC 1 cut(s) 175
LmnI GCTCC 1 cut(s) 1604
Lsp1109I GCAGC 5 cut(s) 856, 1231, 1253, 1376, 1540
LweI GCATC 1 cut(s) 328
MaeI CTAG 6 cut(s) 200, 446, 633, 1098, 1265, 1448
MaeII ACGT 2 cut(s) 534, 663
MaeIII GTNAC 5 cut(s) 26, 579, 1403, 1427, 1519
MalI GATC 4 cut(s) 129, 195, 324, 464
MboI GATC 4 cut(s) 127, 193, 322, 462
MflI RGATCY 1 cut(s) 193
MhlI GDGCHC 1 cut(s) 1400
MluCI AATT 8 cut(s) 13, 108, 484, 509, 916, 1009, 1236, 1478
MlyI GAGTC 5 cut(s) 59, 312, 725, 856, 1117
MmeI TCCRAC 4 cut(s) 42, 807, 1099, 1488
MroNI GCCGGC 1 cut(s) 164
MroXI GAANNNNTTC 1 cut(s) 513
MseI TTAA 7 cut(s) 38, 282, 354, 668, 1013, 1104, 1473
MspA1I CMGCKG 1 cut(s) 1244
MspI CCGG 4 cut(s) 31, 165, 1205, 1633
MspR9I CCNGG 2 cut(s) 852, 1633
Mva1269I GAATGC 1 cut(s) 994
MvaI CCWGG 1 cut(s) 852
MvnI CGCG 4 cut(s) 114, 213, 788, 935
NaeI GCCGGC 1 cut(s) 166
NciI CCSGG 1 cut(s) 1633
NdeII GATC 4 cut(s) 127, 193, 322, 462
NgoMIV GCCGGC 1 cut(s) 164
NlaIII CATG 2 cut(s) 313, 332
NlaIV GGNNCC 3 cut(s) 9, 1203, 1464
NmeAIII GCCGAG 1 cut(s) 1481
NmuCI GTSAC 2 cut(s) 26, 1427
NruI TCGCGA 1 cut(s) 213
PciSI GCTCTTC 1 cut(s) 175
PcsI WCGNNNNNNNCGW 4 cut(s) 234, 384, 407, 939
PctI GAATGC 1 cut(s) 994
PdiI GCCGGC 1 cut(s) 166
PdmI GAANNNNTTC 1 cut(s) 513
PfoI TCCNGGA 1 cut(s) 1631
PkrI GCNGC 6 cut(s) 244, 871, 1243, 1246, 1366, 1555
Ple19I CGATCG 1 cut(s) 325
PleI GAGTC 5 cut(s) 59, 312, 724, 855, 1116
PmaCI CACGTG 1 cut(s) 664
PmlI CACGTG 1 cut(s) 664
PpsI GAGTC 5 cut(s) 59, 312, 724, 855, 1116
Ppu21I YACGTR 1 cut(s) 664
Psp6I CCWGG 1 cut(s) 850
PspCI CACGTG 1 cut(s) 664
PspEI GGTNACC 1 cut(s) 26
PspGI CCWGG 1 cut(s) 850
PspN4I GGNNCC 3 cut(s) 9, 1203, 1464
PspPI GGNCC 2 cut(s) 257, 1462
PsuI RGATCY 1 cut(s) 193
PvuI CGATCG 1 cut(s) 325
PvuII CAGCTG 1 cut(s) 1244
RruI TCGCGA 1 cut(s) 213
RsaI GTAC 3 cut(s) 9, 970, 1493
RsaNI GTAC 3 cut(s) 8, 969, 1492
SapI GCTCTTC 1 cut(s) 175
SaqAI TTAA 7 cut(s) 38, 282, 354, 668, 1013, 1104, 1473
SatI GCNGC 6 cut(s) 243, 870, 1242, 1245, 1365, 1554
Sau3AI GATC 4 cut(s) 127, 193, 322, 462
Sau96I GGNCC 2 cut(s) 257, 1462
SchI GAGTC 5 cut(s) 59, 312, 725, 856, 1117
ScrFI CCNGG 2 cut(s) 852, 1633
SduI GDGCHC 1 cut(s) 1400
SfaNI GCATC 1 cut(s) 328
SinI GGWCC 2 cut(s) 257, 1462
SmlI CTYRAG 3 cut(s) 552, 981, 1112
SmoI CTYRAG 3 cut(s) 552, 981, 1112
Sse9I AATT 8 cut(s) 13, 108, 484, 509, 916, 1009, 1236, 1478
SsiI CCGC 4 cut(s) 242, 1247, 1489, 1619
SspMI CTAG 6 cut(s) 200, 446, 633, 1098, 1265, 1448
StyD4I CCNGG 2 cut(s) 850, 1631
TaaI ACNGT 3 cut(s) 7, 619, 1498
TaiI ACGT 2 cut(s) 537, 666
TaqI TCGA 7 cut(s) 63, 321, 401, 410, 479, 1277, 1382
TasI AATT 8 cut(s) 13, 108, 484, 509, 916, 1009, 1236, 1478
TauI GCSGC 1 cut(s) 245
Tru1I TTAA 7 cut(s) 38, 282, 354, 668, 1013, 1104, 1473
Tru9I TTAA 7 cut(s) 38, 282, 354, 668, 1013, 1104, 1473
TscAI CASTG 1 cut(s) 1073
TseFI GTSAC 2 cut(s) 26, 1427
TseI GCWGC 5 cut(s) 869, 1241, 1244, 1364, 1553
Tsp45I GTSAC 2 cut(s) 26, 1427
TspDTI ATGAA 1 cut(s) 620
TspGWI ACGGA 2 cut(s) 56, 393
TspRI CASTG 1 cut(s) 1073
VneI GTGCAC 1 cut(s) 1396
VpaK11BI GGWCC 2 cut(s) 257, 1462
XapI RAATTY 2 cut(s) 484, 916
XbaI TCTAGA 1 cut(s) 632
XmnI GAANNNNTTC 1 cut(s) 513
XspI CTAG 6 cut(s) 200, 446, 633, 1098, 1265, 1448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.