Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0012216

Physical Location & Seq

Genomic Coordinates Forward (+)

7946803 .. 7947981

Gene Structure 1179 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG104700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGCAAGCGTTGCTCCTGTTTCTGCAGGAGGACGATAAGAACGTGATGATTGCGGTGGCGCAGGGGATCGTTCCGGTGCTGGTGAAGCTTCTCGATTCGAGCAGTTTCGAGATGAAGGAGAACGCCGTGGCGGCGATTTCGATGGTGTCGATGGTGGAGAGCAGCAAGAACGTTCTGGCGGCGGAGGGGCTGCCGCTGCTAAATCACTTGGTTAAGGTTCTGGACTCCGGGAGTGGATTCGCTAAGGAGAAAGCCTGTGTGGCGCTTCAAGGTTTAAGCTTTCCGAAGGAGAATGCGAGAGCGATTGGCTCCAGAGGCGGCATTTCGTCGCTGCTGGATATATGCCAGGGCGGCACGCCGGGCTCGCAGGCTTTGGCGGCCGGAGTGTTGAGGAATTTGGCTGCTTTTGATGAGAACAAGGAGAATATTATACAGGAGGAAGGGGATGTAGTTCTGTTGGCGCTGGCGAAATCAGGGACGGCATTAGCGCAGGAGAATGCGATCGGGTGTTTGTGTCATTTGGTCTCTGATAGCCAAAGCCAGAAGATTTCGGTCTACAAGCAGGGTGGGATTGAGTGCTTGAAGAATATCTGGGATTCGGGGTGTAATAATAATCGGAGTCTGGAGGTTGCGGTGGAGTTGCTGATGCACTTGGCTTCCTGCTCTCTGATTGCGGAAACTCTTGTTGCCGAGGGGTTTGTCACTAGGATTGTTGAGGTATTGAATTGTGGTGTGTTGGGGGTGAGGATTCAGGCGGCTAAGGCGGTTTACGAGCTGGGGTTTTGTTCGAGAACTAGGAAGGAGATGGGTGAATGTGGCTGCATTCCGCCTCTGGTTAAAATGTTGGATGGCAAAGCATTGGAAGAGAAAGAGGCTGCCGTCAAGGCCTTGTCGACATTGTTGCTCTTTGCTGACAATAGGAAGATTTTTAGGAAAATTGAAGGGGGGATTGTGAGTACAGTTCAGCTTTTGAACCCTTCTATTCAGAATTTGGATAAGAAGTACCCTGTTGCTGTGTTGGGGTCACTTGTGCGTTCAAAGAAGTGCAAGAAGCAAATGGTGGCTGCCGGTGTGTGTCTACATTTGCAGAAACTGCTCGGTTTGGAAGTAGAGGGGTCTCAGAAGCTCTTGGAAAGCCTTTGTCGTAGTAAAATTTGGGGTGTTTTTGCCAGATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050896 GO:0051865 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

392

Amino Acids

41.85

Weight (kDa)

8.13

Isoelectric Point (pI)

43.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arm	PF00514	11 - 47	2.5e-07	Armadillo/beta-catenin-like repeat
ARM_ARMC5	PF24768	54 - 241	5.6e-08	ARMC5
ARM_ARMC5	PF24768	130 - 325	5.8e-10	ARMC5
ARM_ARMC5	PF24768	215 - 381	2.4e-06	ARMC5

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012216)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50900
fragaria_vesca	FvH4_5g09100
malus_domestica	MD06G1133700.v1.1 MD14G1150000.v1.1
prunus_persica	Prupe.5G144800_v2.0.a1
pyrus_communis	pycom06g12500 pycom14g12470
rosa_chinensis	RchiOBHm_Chr7g0189111
rosa_laevigata	RLG00000004633
rosa_multiflora	Rmu_co8393143.1_g000001 Rmu_sc0004290.1_g000010 Rmu_sc0007859.1_g000002
rosa_roxburghii	Rroxscaffold_3G00265780
rosa_rugosa	Rorug06G0496000
rosa_samantha	Rh7AG100800 Rh7BG103200 Rh7CG104700 Rh7DG102600
rosa_wichuraiana	Rw7G008690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	555, 893, 1078
AclI	AACGTT	1 cut(s)	171
AclWI	GGATC	1 cut(s)	74
AcoI	YGGCCR	1 cut(s)	378
AcsI	RAATTY	3 cut(s)	394, 988, 1152
AfaI	GTAC	2 cut(s)	958, 1004
AgsI	TTSAA	6 cut(s)	269, 583, 724, 941, 973, 1038
AjnI	CCWGG	1 cut(s)	345
AluBI	AGCT	5 cut(s)	88, 279, 775, 967, 1126
AluI	AGCT	5 cut(s)	88, 279, 775, 967, 1126
Alw26I	GTCTC	2 cut(s)	529, 1122
AlwI	GGATC	1 cut(s)	74
AlwNI	CAGNNNCTG	1 cut(s)	1093
AoxI	GGCC	2 cut(s)	378, 885
ApeKI	GCWGC	8 cut(s)	162, 190, 196, 331, 401, 819, 875, 1064
ApoI	RAATTY	3 cut(s)	394, 988, 1152
AspLEI	GCGC	4 cut(s)	61, 265, 463, 490
AsuC2I	CCSGG	2 cut(s)	229, 360
AsuHPI	GGTGA	3 cut(s)	94, 754, 821
BanII	GRGCYC	1 cut(s)	365
BbvI	GCAGC	8 cut(s)	174, 177, 183, 318, 388, 806, 862, 1051
BccI	CCATC	4 cut(s)	136, 145, 799, 842
BceAI	ACGGC	3 cut(s)	110, 495, 863
BcgI	CGANNNNNNTGC	2 cut(s)	883, 917
BciT130I	CCWGG	1 cut(s)	347
BcnI	CCSGG	2 cut(s)	229, 360
BcoDI	GTCTC	2 cut(s)	529, 1122
BfaI	CTAG	2 cut(s)	705, 795
BfmI	CTRYAG	1 cut(s)	23
BfoI	RGCGCY	2 cut(s)	266, 464
BglI	GCCNNNNNGGC	4 cut(s)	131, 260, 351, 884
BglII	AGATCT	1 cut(s)	1172
Bme1390I	CCNGG	3 cut(s)	229, 347, 360
BmiI	GGNNCC	1 cut(s)	310
BmrFI	CCNGG	3 cut(s)	229, 347, 360
BmsI	GCATC	1 cut(s)	636
BpmI	CTGGAG	2 cut(s)	295, 644
Bpu10I	CCTNAGC	2 cut(s)	243, 759
BpuMI	CCSGG	2 cut(s)	229, 360
BsaI	GGTCTC	2 cut(s)	529, 1122
BsaJI	CCNNGG	3 cut(s)	126, 346, 690
BsaWI	WCCGGW	1 cut(s)	73
Bse118I	RCCGGY	1 cut(s)	1067
BseBI	CCWGG	1 cut(s)	347
BseDI	CCNNGG	3 cut(s)	126, 346, 690
BseGI	GGATG	2 cut(s)	451, 853
BseMII	CTCAG	1 cut(s)	1133
BseX3I	CGGCCG	1 cut(s)	378
BseXI	GCAGC	8 cut(s)	174, 177, 183, 318, 388, 806, 862, 1051
BseYI	CCCAGC	1 cut(s)	775
Bsh1285I	CGRYCG	2 cut(s)	381, 504
BshFI	GGCC	2 cut(s)	380, 887
BsiEI	CGRYCG	2 cut(s)	381, 504
BsiSI	CCGG	5 cut(s)	74, 228, 359, 381, 1068
BslFI	GGGAC	1 cut(s)	490
BsmAI	GTCTC	2 cut(s)	529, 1122
BsmFI	GGGAC	1 cut(s)	490
BsmI	GAATGC	3 cut(s)	298, 502, 822
BsnI	GGCC	2 cut(s)	380, 887
Bso31I	GGTCTC	2 cut(s)	529, 1122
Bsp1286I	GDGCHC	1 cut(s)	365
Bsp143I	GATC	3 cut(s)	66, 501, 1172
BspANI	GGCC	2 cut(s)	380, 887
BspCNI	CTCAG	1 cut(s)	1132
BspLI	GGNNCC	1 cut(s)	310
BspMAI	CTGCAG	1 cut(s)	27
BspPI	GGATC	1 cut(s)	74
BspTNI	GGTCTC	2 cut(s)	529, 1122
BsrFI	RCCGGY	1 cut(s)	1067
BssAI	RCCGGY	1 cut(s)	1067
BssECI	CCNNGG	3 cut(s)	126, 346, 690
BssMI	GATC	3 cut(s)	66, 501, 1172
Bst2UI	CCWGG	1 cut(s)	347
Bst4CI	ACNGT	1 cut(s)	961
Bst6I	CTCTTC	1 cut(s)	858
BstAPI	GCANNNNNTGC	2 cut(s)	10, 1093
BstC8I	GCNNGC	5 cut(s)	6, 356, 365, 369, 465
BstDEI	CTNAG	3 cut(s)	243, 759, 1119
BstDSI	CCRYGG	1 cut(s)	126
BstF5I	GGATG	2 cut(s)	451, 853
BstH2I	RGCGCY	2 cut(s)	266, 464
BstHHI	GCGC	4 cut(s)	61, 265, 463, 490
BstKTI	GATC	3 cut(s)	69, 504, 1175
BstMAI	GTCTC	2 cut(s)	529, 1122
BstMBI	GATC	3 cut(s)	66, 501, 1172
BstMCI	CGRYCG	2 cut(s)	381, 504
BstNI	CCWGG	1 cut(s)	347
BstSCI	CCNGG	3 cut(s)	227, 345, 358
BstSFI	CTRYAG	1 cut(s)	23
BstV1I	GCAGC	8 cut(s)	174, 177, 183, 318, 388, 806, 862, 1051
BstX2I	RGATCY	1 cut(s)	1172
BstYI	RGATCY	1 cut(s)	1172
BstZI	CGGCCG	1 cut(s)	378
BsuRI	GGCC	2 cut(s)	380, 887
BtgI	CCRYGG	1 cut(s)	126
BtsCI	GGATG	2 cut(s)	451, 853
Cac8I	GCNNGC	5 cut(s)	6, 356, 365, 369, 465
CaiI	CAGNNNCTG	1 cut(s)	1093
CfoI	GCGC	4 cut(s)	61, 265, 463, 490
Cfr10I	RCCGGY	1 cut(s)	1067
Csp6I	GTAC	2 cut(s)	957, 1003
CspCI	CAANNNNNGTGG	2 cut(s)	547, 582
CviQI	GTAC	2 cut(s)	957, 1003
DdeI	CTNAG	3 cut(s)	243, 759, 1119
DpnI	GATC	3 cut(s)	68, 503, 1174
DpnII	GATC	3 cut(s)	66, 501, 1172
EaeI	YGGCCR	1 cut(s)	378
EagI	CGGCCG	1 cut(s)	378
Eam1104I	CTCTTC	1 cut(s)	858
EarI	CTCTTC	1 cut(s)	858
EciI	GGCGGA	2 cut(s)	197, 816
EclXI	CGGCCG	1 cut(s)	378
Eco147I	AGGCCT	1 cut(s)	887
Eco24I	GRGCYC	1 cut(s)	365
Eco31I	GGTCTC	2 cut(s)	529, 1122
Eco52I	CGGCCG	1 cut(s)	378
EcoRII	CCWGG	1 cut(s)	345
EcoT38I	GRGCYC	1 cut(s)	365
FaiI	YATR	3 cut(s)	341, 343, 431
FaqI	GGGAC	1 cut(s)	490
FblI	GTMKAC	3 cut(s)	555, 893, 1078
FokI	GGATG	2 cut(s)	458, 860
FriOI	GRGCYC	1 cut(s)	365
FspBI	CTAG	2 cut(s)	705, 795
GlaI	GCGC	4 cut(s)	60, 264, 462, 489
GsaI	CCCAGC	1 cut(s)	779
GsuI	CTGGAG	2 cut(s)	295, 644
HaeII	RGCGCY	2 cut(s)	266, 464
HaeIII	GGCC	2 cut(s)	380, 887
HapII	CCGG	5 cut(s)	74, 228, 359, 381, 1068
HhaI	GCGC	4 cut(s)	61, 265, 463, 490
Hin6I	GCGC	4 cut(s)	59, 263, 461, 488
HinP1I	GCGC	4 cut(s)	59, 263, 461, 488
HincII	GTYRAC	1 cut(s)	894
HindII	GTYRAC	1 cut(s)	894
HindIII	AAGCTT	2 cut(s)	86, 277
HinfI	GANTC	6 cut(s)	95, 224, 237, 596, 619, 748
HpaII	CCGG	5 cut(s)	74, 228, 359, 381, 1068
HphI	GGTGA	3 cut(s)	94, 754, 821
Hpy166II	GTNNAC	4 cut(s)	556, 769, 894, 1079
Hpy188I	TCNGA	6 cut(s)	285, 529, 618, 669, 987, 1122
Hpy188III	TCNNGA	6 cut(s)	92, 109, 221, 312, 623, 789
Hpy8I	GTNNAC	4 cut(s)	556, 769, 894, 1079
Hpy99I	CGWCG	1 cut(s)	331
HpyAV	CCTTC	6 cut(s)	109, 280, 434, 793, 935, 987
HpyCH4III	ACNGT	1 cut(s)	961
HpyCH4IV	ACGT	2 cut(s)	42, 171
HpyCH4V	TGCA	6 cut(s)	4, 25, 649, 822, 1047, 1087
HpyF3I	CTNAG	3 cut(s)	243, 759, 1119
HpySE526I	ACGT	2 cut(s)	42, 171
HspAI	GCGC	4 cut(s)	59, 263, 461, 488
Kzo9I	GATC	3 cut(s)	66, 501, 1172
LmnI	GCTCC	2 cut(s)	18, 314
Lsp1109I	GCAGC	8 cut(s)	174, 177, 183, 318, 388, 806, 862, 1051
LweI	GCATC	1 cut(s)	636
MaeI	CTAG	2 cut(s)	705, 795
MaeII	ACGT	2 cut(s)	42, 171
MaeIII	GTNAC	2 cut(s)	700, 1023
MalI	GATC	3 cut(s)	68, 503, 1174
MboI	GATC	3 cut(s)	66, 501, 1172
MboII	GAAGA	4 cut(s)	556, 595, 875, 934
MflI	RGATCY	1 cut(s)	1172
MhlI	GDGCHC	1 cut(s)	365
MluCI	AATT	5 cut(s)	394, 724, 936, 988, 1152
MlyI	GAGTC	2 cut(s)	218, 628
MmeI	TCCRAC	1 cut(s)	825
MseI	TTAA	4 cut(s)	213, 275, 837, 1177
MspA1I	CMGCKG	1 cut(s)	196
MspI	CCGG	5 cut(s)	74, 228, 359, 381, 1068
MspR9I	CCNGG	3 cut(s)	229, 347, 360
Mva1269I	GAATGC	3 cut(s)	298, 502, 822
MvaI	CCWGG	1 cut(s)	347
NciI	CCSGG	2 cut(s)	229, 360
NdeII	GATC	3 cut(s)	66, 501, 1172
NlaIV	GGNNCC	1 cut(s)	310
NmeAIII	GCCGAG	1 cut(s)	715
NmuCI	GTSAC	2 cut(s)	700, 1023
PceI	AGGCCT	1 cut(s)	887
PcsI	WCGNNNNNNNCGW	2 cut(s)	39, 146
PctI	GAATGC	3 cut(s)	298, 502, 822
PfeI	GAWTC	4 cut(s)	95, 237, 596, 748
PfoI	TCCNGGA	1 cut(s)	227
Ple19I	CGATCG	1 cut(s)	504
PleI	GAGTC	2 cut(s)	218, 627
PpsI	GAGTC	2 cut(s)	218, 627
Psp1406I	AACGTT	1 cut(s)	171
Psp6I	CCWGG	1 cut(s)	345
PspFI	CCCAGC	1 cut(s)	775
PspGI	CCWGG	1 cut(s)	345
PspN4I	GGNNCC	1 cut(s)	310
PstI	CTGCAG	1 cut(s)	27
PstNI	CAGNNNCTG	1 cut(s)	1093
PsuI	RGATCY	1 cut(s)	1172
PvuI	CGATCG	1 cut(s)	504
RsaI	GTAC	2 cut(s)	958, 1004
RsaNI	GTAC	2 cut(s)	957, 1003
SalI	GTCGAC	1 cut(s)	892
SaqAI	TTAA	4 cut(s)	213, 275, 837, 1177
Sau3AI	GATC	3 cut(s)	66, 501, 1172
SchI	GAGTC	2 cut(s)	218, 628
ScrFI	CCNGG	3 cut(s)	229, 347, 360
SduI	GDGCHC	1 cut(s)	365
SfaNI	GCATC	1 cut(s)	636
SfcI	CTRYAG	1 cut(s)	23
Sse9I	AATT	5 cut(s)	394, 724, 936, 988, 1152
SseBI	AGGCCT	1 cut(s)	887
SspI	AATATT	1 cut(s)	427
SspMI	CTAG	2 cut(s)	705, 795
StuI	AGGCCT	1 cut(s)	887
StyD4I	CCNGG	3 cut(s)	227, 345, 358
TaaI	ACNGT	1 cut(s)	961
TaiI	ACGT	2 cut(s)	45, 174
TaqI	TCGA	7 cut(s)	93, 98, 108, 140, 149, 788, 893
TaqII	GACCGA	1 cut(s)	541
TasI	AATT	5 cut(s)	394, 724, 936, 988, 1152
TatI	WGTACW	1 cut(s)	956
TauI	GCSGC	7 cut(s)	134, 182, 196, 321, 354, 380, 758
TfiI	GAWTC	4 cut(s)	95, 237, 596, 748
Tru1I	TTAA	4 cut(s)	213, 275, 837, 1177
Tru9I	TTAA	4 cut(s)	213, 275, 837, 1177
TseFI	GTSAC	2 cut(s)	700, 1023
TseI	GCWGC	8 cut(s)	162, 190, 196, 331, 401, 819, 875, 1064
Tsp45I	GTSAC	2 cut(s)	700, 1023
TspDTI	ATGAA	1 cut(s)	128
XapI	RAATTY	3 cut(s)	394, 988, 1152
XmiI	GTMKAC	3 cut(s)	555, 893, 1078
XspI	CTAG	2 cut(s)	705, 795

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.