Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8393143.1

Orthogroup ID

OG0012216

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1229

Gene Structure 1228 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8393143.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1193 bp

agtgccggaatctggtgactgggctgcagattgggagcgccgagtcgcggaactcggccatggaagcgttgctcctgcttctgcaggaggacgataagaacgtgatgattgcggtggcgcaggggatcgttccggtgctggtgaagcttctcgattcgagcagtttcgagatgaaggagaacgccgtggcggcgatttcgatggtgtcgatggtggagagcagcaagaacgttctggcggcggaggggctgccgctgctaaatcacttggttaaggttctggactccgggagtggattcgctaaggagaagtcctgtgtggcgcttcaaggtttaagctttccgaaggagaatgcgagagcgattggctccagaggcggcatttcgtcgctgctggatatatgccagggcggcacgccgggctcgcaggctttggcggccggagtgttgaggaatttggctgcttttgatgagaacaaggagaatattatacaggaggaaggggatgtagttctgttggcgctggcgaaatcagggaccgcattagcgcaggagaatgcgatcgggtgtttgtgtcatttggtctctgatagccaaagccagaagatttcggtttacaagcagggcgggattgagtgcttgaagaatatctgggattcggggtgtaataataatcggagtctggaggttgcggtggagttgctgatgcacttggcttcctgctctctgattgcggaaactcttgttgccgaggggtttgtcactaggattgttgaggtattgaattgtggtgtgttgggggtgaggattcaggccgctaaggcggtttacgagctggggtttagctcgagaactaggaaggagatgggtgaatgtggctgcattccgcctttggttaaaatgttggatggcaaagcattggaagagaaagaggctgccgtcaaggccttgtcgacattgttgctctttgctgacaataggaagatttttaggaaaattgaaggggggattgtgagtacagttcagcttttgaacccttctattcagaatttggataagaagtaccctgttgctgtgttggcgtcacttgtgcgttcaaagaagtgcaagaagcaaatggtggctgccggtgtgtgtctacatttgcagaaactgctcggtttggaagtagaggggtctcagaagctcttggaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050896 GO:0051865 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

397

Amino Acids

42.2

Weight (kDa)

7.03

Isoelectric Point (pI)

43.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012216)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50900
fragaria_vesca	FvH4_5g09100
malus_domestica	MD06G1133700.v1.1 MD14G1150000.v1.1
prunus_persica	Prupe.5G144800_v2.0.a1
pyrus_communis	pycom06g12500 pycom14g12470
rosa_chinensis	RchiOBHm_Chr7g0189111
rosa_laevigata	RLG00000004633
rosa_multiflora	Rmu_co8393143.1_g000001 Rmu_sc0004290.1_g000010 Rmu_sc0007859.1_g000002
rosa_roxburghii	Rroxscaffold_3G00265780
rosa_rugosa	Rorug06G0496000
rosa_samantha	Rh7AG100800 Rh7BG103200 Rh7CG104700 Rh7DG102600
rosa_wichuraiana	Rw7G008690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	952, 1137
AccII	CGCG	1 cut(s)	48
AclI	AACGTT	1 cut(s)	230
AclWI	GGATC	1 cut(s)	133
AcoI	YGGCCR	2 cut(s)	56, 437
AcsI	RAATTY	2 cut(s)	453, 1047
AcyI	GRCGYC	1 cut(s)	1081
AfaI	GTAC	2 cut(s)	1017, 1063
AfiI	CCNNNNNNNGG	2 cut(s)	12, 47
AgsI	TTSAA	6 cut(s)	328, 642, 783, 1000, 1032, 1097
AjnI	CCWGG	1 cut(s)	404
AluBI	AGCT	6 cut(s)	147, 338, 834, 845, 1026, 1185
AluI	AGCT	6 cut(s)	147, 338, 834, 845, 1026, 1185
Alw26I	GTCTC	2 cut(s)	588, 1181
AlwI	GGATC	1 cut(s)	133
AlwNI	CAGNNNCTG	1 cut(s)	1152
Ama87I	CYCGRG	1 cut(s)	846
AoxI	GGCC	4 cut(s)	56, 437, 812, 944
ApeKI	GCWGC	9 cut(s)	24, 221, 249, 255, 390, 460, 878, 934, 1123
ApoI	RAATTY	2 cut(s)	453, 1047
AspLEI	GCGC	5 cut(s)	40, 120, 324, 522, 549
AspS9I	GGNCC	1 cut(s)	536
AsuC2I	CCSGG	2 cut(s)	288, 419
AsuHPI	GGTGA	4 cut(s)	27, 153, 813, 880
AvaI	CYCGRG	1 cut(s)	846
AvaII	GGWCC	1 cut(s)	536
BanII	GRGCYC	1 cut(s)	424
BbvI	GCAGC	9 cut(s)	11, 233, 236, 242, 377, 447, 865, 921, 1110
BccI	CCATC	4 cut(s)	195, 204, 858, 901
BceAI	ACGGC	2 cut(s)	169, 922
BcgI	CGANNNNNNTGC	2 cut(s)	942, 976
BciT130I	CCWGG	1 cut(s)	406
BcnI	CCSGG	2 cut(s)	288, 419
BcoDI	GTCTC	2 cut(s)	588, 1181
BfaI	CTAG	2 cut(s)	764, 854
BfmI	CTRYAG	2 cut(s)	25, 82
BfoI	RGCGCY	3 cut(s)	41, 325, 523
BglI	GCCNNNNNGGC	4 cut(s)	190, 410, 820, 943
Bme1390I	CCNGG	3 cut(s)	288, 406, 419
Bme18I	GGWCC	1 cut(s)	536
BmeT110I	CYCGRG	1 cut(s)	846
BmgT120I	GGNCC	1 cut(s)	536
BmiI	GGNNCC	2 cut(s)	369, 537
BmrFI	CCNGG	3 cut(s)	288, 406, 419
BmrI	ACTGGG	1 cut(s)	29
BmsI	GCATC	1 cut(s)	695
BmuI	ACTGGG	1 cut(s)	29
BpmI	CTGGAG	2 cut(s)	354, 703
Bpu10I	CCTNAGC	2 cut(s)	302, 818
BpuMI	CCSGG	2 cut(s)	288, 419
BsaHI	GRCGYC	1 cut(s)	1081
BsaI	GGTCTC	2 cut(s)	588, 1181
BsaJI	CCNNGG	4 cut(s)	59, 185, 405, 749
BsaWI	WCCGGW	1 cut(s)	132
Bsc4I	CCNNNNNNNGG	2 cut(s)	12, 47
Bse118I	RCCGGY	1 cut(s)	1126
Bse1I	ACTGG	1 cut(s)	24
BseBI	CCWGG	1 cut(s)	406
BseDI	CCNNGG	4 cut(s)	59, 185, 405, 749
BseGI	GGATG	2 cut(s)	510, 912
BseLI	CCNNNNNNNGG	2 cut(s)	12, 47
BseMII	CTCAG	1 cut(s)	1192
BseNI	ACTGG	1 cut(s)	24
BseX3I	CGGCCG	1 cut(s)	437
BseXI	GCAGC	9 cut(s)	11, 233, 236, 242, 377, 447, 865, 921, 1110
BseYI	CCCAGC	1 cut(s)	834
Bsh1236I	CGCG	1 cut(s)	48
Bsh1285I	CGRYCG	2 cut(s)	440, 563
BshFI	GGCC	4 cut(s)	58, 439, 814, 946
BsiEI	CGRYCG	2 cut(s)	440, 563
BsiHKCI	CYCGRG	1 cut(s)	846
BsiSI	CCGG	6 cut(s)	6, 133, 287, 418, 440, 1127
BslFI	GGGAC	1 cut(s)	549
BslI	CCNNNNNNNGG	2 cut(s)	12, 47
BsmAI	GTCTC	2 cut(s)	588, 1181
BsmFI	GGGAC	1 cut(s)	549
BsmI	GAATGC	3 cut(s)	357, 561, 881
BsnI	GGCC	4 cut(s)	58, 439, 814, 946
Bso31I	GGTCTC	2 cut(s)	588, 1181
BsoBI	CYCGRG	1 cut(s)	846
Bsp1286I	GDGCHC	1 cut(s)	424
Bsp143I	GATC	2 cut(s)	125, 560
Bsp19I	CCATGG	1 cut(s)	59
BspANI	GGCC	4 cut(s)	58, 439, 814, 946
BspCNI	CTCAG	1 cut(s)	1191
BspFNI	CGCG	1 cut(s)	48
BspLI	GGNNCC	2 cut(s)	369, 537
BspMAI	CTGCAG	2 cut(s)	29, 86
BspPI	GGATC	1 cut(s)	133
BspTNI	GGTCTC	2 cut(s)	588, 1181
BsrFI	RCCGGY	1 cut(s)	1126
BsrI	ACTGG	1 cut(s)	24
BssAI	RCCGGY	1 cut(s)	1126
BssECI	CCNNGG	4 cut(s)	59, 185, 405, 749
BssMI	GATC	2 cut(s)	125, 560
BssNI	GRCGYC	1 cut(s)	1081
BssT1I	CCWWGG	1 cut(s)	59
Bst2UI	CCWGG	1 cut(s)	406
Bst4CI	ACNGT	1 cut(s)	1020
Bst6I	CTCTTC	1 cut(s)	917
BstACI	GRCGYC	1 cut(s)	1081
BstAPI	GCANNNNNTGC	1 cut(s)	1152
BstC8I	GCNNGC	4 cut(s)	415, 424, 428, 524
BstDEI	CTNAG	3 cut(s)	302, 818, 1178
BstDSI	CCRYGG	2 cut(s)	59, 185
BstF5I	GGATG	2 cut(s)	510, 912
BstFNI	CGCG	1 cut(s)	48
BstH2I	RGCGCY	3 cut(s)	41, 325, 523
BstHHI	GCGC	5 cut(s)	40, 120, 324, 522, 549
BstKTI	GATC	2 cut(s)	128, 563
BstMAI	GTCTC	2 cut(s)	588, 1181
BstMBI	GATC	2 cut(s)	125, 560
BstMCI	CGRYCG	2 cut(s)	440, 563
BstNI	CCWGG	1 cut(s)	406
BstSCI	CCNGG	3 cut(s)	286, 404, 417
BstSFI	CTRYAG	2 cut(s)	25, 82
BstUI	CGCG	1 cut(s)	48
BstV1I	GCAGC	9 cut(s)	11, 233, 236, 242, 377, 447, 865, 921, 1110
BstZI	CGGCCG	1 cut(s)	437
BsuRI	GGCC	4 cut(s)	58, 439, 814, 946
BtgI	CCRYGG	2 cut(s)	59, 185
BtsCI	GGATG	2 cut(s)	510, 912
Cac8I	GCNNGC	4 cut(s)	415, 424, 428, 524
CaiI	CAGNNNCTG	1 cut(s)	1152
CfoI	GCGC	5 cut(s)	40, 120, 324, 522, 549
Cfr10I	RCCGGY	1 cut(s)	1126
Cfr13I	GGNCC	1 cut(s)	536
CseI	GACGC	1 cut(s)	1070
Csp6I	GTAC	2 cut(s)	1016, 1062
CviAII	CATG	1 cut(s)	60
CviQI	GTAC	2 cut(s)	1016, 1062
DdeI	CTNAG	3 cut(s)	302, 818, 1178
DpnI	GATC	2 cut(s)	127, 562
DpnII	GATC	2 cut(s)	125, 560
EaeI	YGGCCR	2 cut(s)	56, 437
EagI	CGGCCG	1 cut(s)	437
Eam1104I	CTCTTC	1 cut(s)	917
EarI	CTCTTC	1 cut(s)	917
EciI	GGCGGA	2 cut(s)	256, 875
EclXI	CGGCCG	1 cut(s)	437
Eco130I	CCWWGG	1 cut(s)	59
Eco147I	AGGCCT	1 cut(s)	946
Eco24I	GRGCYC	1 cut(s)	424
Eco31I	GGTCTC	2 cut(s)	588, 1181
Eco47I	GGWCC	1 cut(s)	536
Eco52I	CGGCCG	1 cut(s)	437
Eco88I	CYCGRG	1 cut(s)	846
EcoRII	CCWGG	1 cut(s)	404
EcoT14I	CCWWGG	1 cut(s)	59
EcoT38I	GRGCYC	1 cut(s)	424
ErhI	CCWWGG	1 cut(s)	59
FaeI	CATG	1 cut(s)	63
FaiI	YATR	4 cut(s)	61, 400, 402, 490
FaqI	GGGAC	1 cut(s)	549
FatI	CATG	1 cut(s)	59
FauI	CCCGC	1 cut(s)	619
FblI	GTMKAC	2 cut(s)	952, 1137
FokI	GGATG	2 cut(s)	517, 919
FriOI	GRGCYC	1 cut(s)	424
FspBI	CTAG	2 cut(s)	764, 854
GlaI	GCGC	5 cut(s)	39, 119, 323, 521, 548
GsaI	CCCAGC	1 cut(s)	838
GsuI	CTGGAG	2 cut(s)	354, 703
HaeII	RGCGCY	3 cut(s)	41, 325, 523
HaeIII	GGCC	4 cut(s)	58, 439, 814, 946
HapII	CCGG	6 cut(s)	6, 133, 287, 418, 440, 1127
HgaI	GACGC	1 cut(s)	1070
HhaI	GCGC	5 cut(s)	40, 120, 324, 522, 549
Hin1I	GRCGYC	1 cut(s)	1081
Hin1II	CATG	1 cut(s)	63
Hin6I	GCGC	5 cut(s)	38, 118, 322, 520, 547
HinP1I	GCGC	5 cut(s)	38, 118, 322, 520, 547
HincII	GTYRAC	1 cut(s)	953
HindII	GTYRAC	1 cut(s)	953
HindIII	AAGCTT	2 cut(s)	145, 336
HinfI	GANTC	8 cut(s)	9, 43, 154, 283, 296, 655, 678, 807
HpaII	CCGG	6 cut(s)	6, 133, 287, 418, 440, 1127
HphI	GGTGA	4 cut(s)	27, 153, 813, 880
Hpy166II	GTNNAC	4 cut(s)	615, 828, 953, 1138
Hpy188I	TCNGA	6 cut(s)	344, 588, 677, 728, 1046, 1181
Hpy188III	TCNNGA	6 cut(s)	151, 168, 280, 371, 682, 848
Hpy8I	GTNNAC	4 cut(s)	615, 828, 953, 1138
Hpy99I	CGWCG	1 cut(s)	390
HpyAV	CCTTC	6 cut(s)	168, 339, 493, 852, 994, 1046
HpyCH4III	ACNGT	1 cut(s)	1020
HpyCH4IV	ACGT	2 cut(s)	101, 230
HpyCH4V	TGCA	6 cut(s)	27, 84, 708, 881, 1106, 1146
HpyF3I	CTNAG	3 cut(s)	302, 818, 1178
HpySE526I	ACGT	2 cut(s)	101, 230
Hsp92I	GRCGYC	1 cut(s)	1081
Hsp92II	CATG	1 cut(s)	63
HspAI	GCGC	5 cut(s)	38, 118, 322, 520, 547
Kzo9I	GATC	2 cut(s)	125, 560
LmnI	GCTCC	3 cut(s)	35, 77, 373
Lsp1109I	GCAGC	9 cut(s)	11, 233, 236, 242, 377, 447, 865, 921, 1110
LweI	GCATC	1 cut(s)	695
MaeI	CTAG	2 cut(s)	764, 854
MaeII	ACGT	2 cut(s)	101, 230
MaeIII	GTNAC	3 cut(s)	15, 759, 1082
MalI	GATC	2 cut(s)	127, 562
MboI	GATC	2 cut(s)	125, 560
MboII	GAAGA	4 cut(s)	615, 654, 934, 993
MhlI	GDGCHC	1 cut(s)	424
MluCI	AATT	4 cut(s)	453, 783, 995, 1047
MlyI	GAGTC	3 cut(s)	52, 277, 687
MmeI	TCCRAC	1 cut(s)	884
MseI	TTAA	3 cut(s)	272, 334, 896
MspA1I	CMGCKG	1 cut(s)	255
MspI	CCGG	6 cut(s)	6, 133, 287, 418, 440, 1127
MspR9I	CCNGG	3 cut(s)	288, 406, 419
Mva1269I	GAATGC	3 cut(s)	357, 561, 881
MvaI	CCWGG	1 cut(s)	406
MvnI	CGCG	1 cut(s)	48
NciI	CCSGG	2 cut(s)	288, 419
NcoI	CCATGG	1 cut(s)	59
NdeII	GATC	2 cut(s)	125, 560
NlaIII	CATG	1 cut(s)	63
NlaIV	GGNNCC	2 cut(s)	369, 537
NmeAIII	GCCGAG	3 cut(s)	34, 66, 774
NmuCI	GTSAC	3 cut(s)	15, 759, 1082
PaeR7I	CTCGAG	1 cut(s)	846
PceI	AGGCCT	1 cut(s)	946
PcsI	WCGNNNNNNNCGW	2 cut(s)	98, 205
PctI	GAATGC	3 cut(s)	357, 561, 881
PfeI	GAWTC	5 cut(s)	9, 154, 296, 655, 807
PfoI	TCCNGGA	1 cut(s)	286
Ple19I	CGATCG	1 cut(s)	563
PleI	GAGTC	3 cut(s)	51, 277, 686
PpsI	GAGTC	3 cut(s)	51, 277, 686
Psp1406I	AACGTT	1 cut(s)	230
Psp6I	CCWGG	1 cut(s)	404
PspFI	CCCAGC	1 cut(s)	834
PspGI	CCWGG	1 cut(s)	404
PspN4I	GGNNCC	2 cut(s)	369, 537
PspPI	GGNCC	1 cut(s)	536
PstI	CTGCAG	2 cut(s)	29, 86
PstNI	CAGNNNCTG	1 cut(s)	1152
PvuI	CGATCG	1 cut(s)	563
RsaI	GTAC	2 cut(s)	1017, 1063
RsaNI	GTAC	2 cut(s)	1016, 1062
SalI	GTCGAC	1 cut(s)	951
SaqAI	TTAA	3 cut(s)	272, 334, 896
Sau3AI	GATC	2 cut(s)	125, 560
Sau96I	GGNCC	1 cut(s)	536
SchI	GAGTC	3 cut(s)	52, 277, 687
ScrFI	CCNGG	3 cut(s)	288, 406, 419
SduI	GDGCHC	1 cut(s)	424
SfaNI	GCATC	1 cut(s)	695
SfcI	CTRYAG	2 cut(s)	25, 82
Sfr274I	CTCGAG	1 cut(s)	846
SinI	GGWCC	1 cut(s)	536
SlaI	CTCGAG	1 cut(s)	846
SmlI	CTYRAG	1 cut(s)	846
SmoI	CTYRAG	1 cut(s)	846
Sse9I	AATT	4 cut(s)	453, 783, 995, 1047
SseBI	AGGCCT	1 cut(s)	946
SspI	AATATT	1 cut(s)	486
SspMI	CTAG	2 cut(s)	764, 854
StuI	AGGCCT	1 cut(s)	946
StyD4I	CCNGG	3 cut(s)	286, 404, 417
StyI	CCWWGG	1 cut(s)	59
TaaI	ACNGT	1 cut(s)	1020
TaiI	ACGT	2 cut(s)	104, 233
TaqI	TCGA	7 cut(s)	152, 157, 167, 199, 208, 847, 952
TasI	AATT	4 cut(s)	453, 783, 995, 1047
TatI	WGTACW	1 cut(s)	1015
TauI	GCSGC	7 cut(s)	193, 241, 255, 380, 413, 439, 817
TfiI	GAWTC	5 cut(s)	9, 154, 296, 655, 807
Tru1I	TTAA	3 cut(s)	272, 334, 896
Tru9I	TTAA	3 cut(s)	272, 334, 896
TseFI	GTSAC	3 cut(s)	15, 759, 1082
TseI	GCWGC	9 cut(s)	24, 221, 249, 255, 390, 460, 878, 934, 1123
Tsp45I	GTSAC	3 cut(s)	15, 759, 1082
TspDTI	ATGAA	1 cut(s)	187
VpaK11BI	GGWCC	1 cut(s)	536
XapI	RAATTY	2 cut(s)	453, 1047
XhoI	CTCGAG	1 cut(s)	846
XmiI	GTMKAC	2 cut(s)	952, 1137
XspI	CTAG	2 cut(s)	764, 854

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.