Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004290.1

Orthogroup ID

OG0012216

Physical Location & Seq

Genomic Coordinates Forward (+)

85012 .. 85728

Gene Structure 717 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004290.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ctggcgaaatcagggacggcattagcgcaggagaatgcgatcgggtgtttgtgtcatttggtctctgatagccaaagccagaagatttcggtttacaagcagggcgggattgagtgcttgaagaatatctgggattcggggtgtaataataatcggagtctggaggttgcggtggagttgctgatgcacttggcttcctgctctctgattgcggaaactcttgttgccgaggggtttgtcactaggattgttgaggtattgaattgtggtgtgttgggggtgaggattcaggccgctaaggcggtttacgagctggggttttgctcgagaactaggaaggagatgggtgaatgtggctgcattccgcctttggttaaaatgttggatggcaaagcattggaagagaaagaggctgccgtcaaggccttgtcgacattgttgctctttgctgacaataggaagatttttaggaaaattgaaggggggattgtgagtacagtgcagcttttgaacccttctattcagaatttggataagaagtaccctgttgctgtgttggcgtcacttgtgcgttcaaagaagtgcaagaagcaaatggtggctgccggtgtgtgtctacatttgcagaaactgctcggtttggaagtagaggggtctcagaagctcttggaaagcctttgtcgtagtaaaatttggggtgtttttgccagatcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050896 GO:0051865 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

238

Amino Acids

25.79

Weight (kDa)

8.99

Isoelectric Point (pI)

44.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012216)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50900
fragaria_vesca	FvH4_5g09100
malus_domestica	MD06G1133700.v1.1 MD14G1150000.v1.1
prunus_persica	Prupe.5G144800_v2.0.a1
pyrus_communis	pycom06g12500 pycom14g12470
rosa_chinensis	RchiOBHm_Chr7g0189111
rosa_laevigata	RLG00000004633
rosa_multiflora	Rmu_co8393143.1_g000001 Rmu_sc0004290.1_g000010 Rmu_sc0007859.1_g000002
rosa_roxburghii	Rroxscaffold_3G00265780
rosa_rugosa	Rorug06G0496000
rosa_samantha	Rh7AG100800 Rh7BG103200 Rh7CG104700 Rh7DG102600
rosa_wichuraiana	Rw7G008690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	431, 616
AciI	CCGC	6 cut(s)	105, 170, 212, 294, 302, 365
AcsI	RAATTY	2 cut(s)	526, 690
AcyI	GRCGYC	1 cut(s)	560
AfaI	GTAC	2 cut(s)	496, 542
AgsI	TTSAA	5 cut(s)	121, 262, 479, 511, 576
AluBI	AGCT	3 cut(s)	313, 505, 664
AluI	AGCT	3 cut(s)	313, 505, 664
Alw26I	GTCTC	2 cut(s)	67, 660
AlwNI	CAGNNNCTG	1 cut(s)	631
Ama87I	CYCGRG	1 cut(s)	325
AoxI	GGCC	2 cut(s)	291, 423
ApeKI	GCWGC	4 cut(s)	357, 413, 502, 602
ApoI	RAATTY	2 cut(s)	526, 690
AspLEI	GCGC	1 cut(s)	28
AsuHPI	GGTGA	2 cut(s)	292, 359
AvaI	CYCGRG	1 cut(s)	325
BbvI	GCAGC	4 cut(s)	344, 400, 514, 589
BccI	CCATC	2 cut(s)	337, 380
BceAI	ACGGC	2 cut(s)	33, 401
BcgI	CGANNNNNNTGC	2 cut(s)	421, 455
BcoDI	GTCTC	2 cut(s)	67, 660
BfaI	CTAG	2 cut(s)	243, 333
BglI	GCCNNNNNGGC	2 cut(s)	299, 422
BglII	AGATCT	1 cut(s)	710
BisI	GCNGC	5 cut(s)	294, 358, 414, 503, 603
BlsI	GCNGC	5 cut(s)	295, 359, 415, 504, 604
BmeT110I	CYCGRG	1 cut(s)	325
BmsI	GCATC	1 cut(s)	174
BpmI	CTGGAG	1 cut(s)	182
Bpu10I	CCTNAGC	1 cut(s)	297
BsaHI	GRCGYC	1 cut(s)	560
BsaI	GGTCTC	2 cut(s)	67, 660
BsaJI	CCNNGG	1 cut(s)	228
Bse118I	RCCGGY	1 cut(s)	605
BseDI	CCNNGG	1 cut(s)	228
BseGI	GGATG	1 cut(s)	391
BseMII	CTCAG	1 cut(s)	671
BseXI	GCAGC	4 cut(s)	344, 400, 514, 589
BseYI	CCCAGC	1 cut(s)	313
BsgI	GTGCAG	1 cut(s)	521
Bsh1285I	CGRYCG	1 cut(s)	42
BshFI	GGCC	2 cut(s)	293, 425
BsiEI	CGRYCG	1 cut(s)	42
BsiHKCI	CYCGRG	1 cut(s)	325
BsiSI	CCGG	1 cut(s)	606
BslFI	GGGAC	1 cut(s)	28
BsmAI	GTCTC	2 cut(s)	67, 660
BsmFI	GGGAC	1 cut(s)	28
BsmI	GAATGC	2 cut(s)	40, 360
BsnI	GGCC	2 cut(s)	293, 425
Bso31I	GGTCTC	2 cut(s)	67, 660
BsoBI	CYCGRG	1 cut(s)	325
Bsp143I	GATC	2 cut(s)	39, 710
BspACI	CCGC	6 cut(s)	105, 170, 212, 294, 302, 365
BspANI	GGCC	2 cut(s)	293, 425
BspCNI	CTCAG	1 cut(s)	670
BspTNI	GGTCTC	2 cut(s)	67, 660
BsrFI	RCCGGY	1 cut(s)	605
BssAI	RCCGGY	1 cut(s)	605
BssECI	CCNNGG	1 cut(s)	228
BssMI	GATC	2 cut(s)	39, 710
BssNI	GRCGYC	1 cut(s)	560
Bst4CI	ACNGT	1 cut(s)	499
Bst6I	CTCTTC	1 cut(s)	396
BstACI	GRCGYC	1 cut(s)	560
BstAPI	GCANNNNNTGC	1 cut(s)	631
BstDEI	CTNAG	2 cut(s)	297, 657
BstF5I	GGATG	1 cut(s)	391
BstHHI	GCGC	1 cut(s)	28
BstKTI	GATC	2 cut(s)	42, 713
BstMAI	GTCTC	2 cut(s)	67, 660
BstMBI	GATC	2 cut(s)	39, 710
BstMCI	CGRYCG	1 cut(s)	42
BstMWI	GCNNNNNNNGC	4 cut(s)	299, 422, 557, 631
BstV1I	GCAGC	4 cut(s)	344, 400, 514, 589
BstX2I	RGATCY	1 cut(s)	710
BstYI	RGATCY	1 cut(s)	710
BsuRI	GGCC	2 cut(s)	293, 425
BtsCI	GGATG	1 cut(s)	391
BtsIMutI	CAGTG	1 cut(s)	504
CaiI	CAGNNNCTG	1 cut(s)	631
CfoI	GCGC	1 cut(s)	28
Cfr10I	RCCGGY	1 cut(s)	605
CseI	GACGC	1 cut(s)	549
Csp6I	GTAC	2 cut(s)	495, 541
CviQI	GTAC	2 cut(s)	495, 541
DdeI	CTNAG	2 cut(s)	297, 657
DpnI	GATC	2 cut(s)	41, 712
DpnII	GATC	2 cut(s)	39, 710
Eam1104I	CTCTTC	1 cut(s)	396
EarI	CTCTTC	1 cut(s)	396
EciI	GGCGGA	1 cut(s)	354
Eco147I	AGGCCT	1 cut(s)	425
Eco31I	GGTCTC	2 cut(s)	67, 660
Eco88I	CYCGRG	1 cut(s)	325
FaqI	GGGAC	1 cut(s)	28
FauI	CCCGC	1 cut(s)	98
FblI	GTMKAC	2 cut(s)	431, 616
Fnu4HI	GCNGC	5 cut(s)	294, 358, 414, 503, 603
FokI	GGATG	1 cut(s)	398
Fsp4HI	GCNGC	5 cut(s)	294, 358, 414, 503, 603
FspBI	CTAG	2 cut(s)	243, 333
GlaI	GCGC	1 cut(s)	27
GluI	GCNGC	5 cut(s)	294, 358, 414, 503, 603
GsaI	CCCAGC	1 cut(s)	317
GsuI	CTGGAG	1 cut(s)	182
HaeIII	GGCC	2 cut(s)	293, 425
HapII	CCGG	1 cut(s)	606
HgaI	GACGC	1 cut(s)	549
HhaI	GCGC	1 cut(s)	28
Hin1I	GRCGYC	1 cut(s)	560
Hin6I	GCGC	1 cut(s)	26
HinP1I	GCGC	1 cut(s)	26
HincII	GTYRAC	1 cut(s)	432
HindII	GTYRAC	1 cut(s)	432
HinfI	GANTC	3 cut(s)	134, 157, 286
HpaII	CCGG	1 cut(s)	606
HphI	GGTGA	2 cut(s)	292, 359
Hpy166II	GTNNAC	4 cut(s)	94, 307, 432, 617
Hpy188I	TCNGA	5 cut(s)	67, 156, 207, 525, 660
Hpy188III	TCNNGA	2 cut(s)	161, 327
Hpy8I	GTNNAC	4 cut(s)	94, 307, 432, 617
HpyAV	CCTTC	3 cut(s)	331, 473, 525
HpyCH4III	ACNGT	1 cut(s)	499
HpyCH4V	TGCA	5 cut(s)	187, 360, 502, 585, 625
HpyF10VI	GCNNNNNNNGC	4 cut(s)	299, 422, 557, 631
HpyF3I	CTNAG	2 cut(s)	297, 657
Hsp92I	GRCGYC	1 cut(s)	560
HspAI	GCGC	1 cut(s)	26
Kzo9I	GATC	2 cut(s)	39, 710
Lsp1109I	GCAGC	4 cut(s)	344, 400, 514, 589
LweI	GCATC	1 cut(s)	174
MaeI	CTAG	2 cut(s)	243, 333
MaeIII	GTNAC	2 cut(s)	238, 561
MalI	GATC	2 cut(s)	41, 712
MboI	GATC	2 cut(s)	39, 710
MboII	GAAGA	4 cut(s)	94, 133, 413, 472
MflI	RGATCY	1 cut(s)	710
MluCI	AATT	4 cut(s)	262, 474, 526, 690
MlyI	GAGTC	1 cut(s)	166
MmeI	TCCRAC	1 cut(s)	363
MnlI	CCTC	6 cut(s)	157, 223, 247, 276, 403, 643
MseI	TTAA	2 cut(s)	375, 715
MspI	CCGG	1 cut(s)	606
Mva1269I	GAATGC	2 cut(s)	40, 360
MwoI	GCNNNNNNNGC	4 cut(s)	299, 422, 557, 631
NdeII	GATC	2 cut(s)	39, 710
NmeAIII	GCCGAG	1 cut(s)	253
NmuCI	GTSAC	2 cut(s)	238, 561
PaeR7I	CTCGAG	1 cut(s)	325
PceI	AGGCCT	1 cut(s)	425
PctI	GAATGC	2 cut(s)	40, 360
PfeI	GAWTC	2 cut(s)	134, 286
PkrI	GCNGC	5 cut(s)	295, 359, 415, 504, 604
Ple19I	CGATCG	1 cut(s)	42
PleI	GAGTC	1 cut(s)	165
PpsI	GAGTC	1 cut(s)	165
PspFI	CCCAGC	1 cut(s)	313
PstNI	CAGNNNCTG	1 cut(s)	631
PsuI	RGATCY	1 cut(s)	710
PvuI	CGATCG	1 cut(s)	42
RsaI	GTAC	2 cut(s)	496, 542
RsaNI	GTAC	2 cut(s)	495, 541
SalI	GTCGAC	1 cut(s)	430
SaqAI	TTAA	2 cut(s)	375, 715
SatI	GCNGC	5 cut(s)	294, 358, 414, 503, 603
Sau3AI	GATC	2 cut(s)	39, 710
SchI	GAGTC	1 cut(s)	166
SetI	ASST	5 cut(s)	168, 258, 315, 507, 666
SfaNI	GCATC	1 cut(s)	174
Sfr274I	CTCGAG	1 cut(s)	325
SlaI	CTCGAG	1 cut(s)	325
SmlI	CTYRAG	1 cut(s)	325
SmoI	CTYRAG	1 cut(s)	325
Sse9I	AATT	4 cut(s)	262, 474, 526, 690
SseBI	AGGCCT	1 cut(s)	425
SsiI	CCGC	6 cut(s)	105, 170, 212, 294, 302, 365
SspMI	CTAG	2 cut(s)	243, 333
StuI	AGGCCT	1 cut(s)	425
TaaI	ACNGT	1 cut(s)	499
TaqI	TCGA	2 cut(s)	326, 431
TasI	AATT	4 cut(s)	262, 474, 526, 690
TatI	WGTACW	1 cut(s)	494
TauI	GCSGC	1 cut(s)	296
TfiI	GAWTC	2 cut(s)	134, 286
Tru1I	TTAA	2 cut(s)	375, 715
Tru9I	TTAA	2 cut(s)	375, 715
TscAI	CASTG	1 cut(s)	504
TseFI	GTSAC	2 cut(s)	238, 561
TseI	GCWGC	4 cut(s)	357, 413, 502, 602
Tsp45I	GTSAC	2 cut(s)	238, 561
TspRI	CASTG	1 cut(s)	504
XapI	RAATTY	2 cut(s)	526, 690
XhoI	CTCGAG	1 cut(s)	325
XmiI	GTMKAC	2 cut(s)	431, 616
XspI	CTAG	2 cut(s)	243, 333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.