Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003205

Physical Location & Seq

Genomic Coordinates Reverse (-)

61289377 .. 61292814

Gene Structure 3438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0496000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGCCACTCTTCTCTCACCGCCAGTCTTCCCCTCTCCCCACCACCACCACCTCCTACTCCTCCAAGCTCCTCAAGCCCCTGAAACCCACCTCCGCCTCCGTCCCCACTCGCACTCCCCTGCCCATTATCGCCTTTTCCCTCATCTCCCTCCTCATCGGCCTCGCCGGAACAATCTTCGCCGTCGCCGCCCTCCGCCGCTCCACACCCCTCCCCGTTTTCCGATGCGGCAAATCCGAAGATACTTTCCGAGCATTCTACTCCCTCTCCAATTCTCGCAACCTCAACCACAATGCCGGGTTGATTGAACGGCCTAAGCTTCTCGGCTTCGTCGGAATTCAGACCGGGTCCGGGGCAGCTGATCGCCGCGCCGCCCTGCGCACCACTTGGTTTCCTTCCGACCCAGATGGTCTCTTGAGGTTGGAACAAGCTACTGGTTTAGCTTTTAGGTTTGTTATCGGGCGATCGAAAGATGCAAAGAAGATGGCAGAGCTTCAGAAAGAGATAGATAAGTACAGAGACTTTTTGGTGATTGACATCAAGGATGAATATGTAAGCCTTCCATGGAAAACGTTGGAGTTTTTCAAGGCGGCGTTTCAACAGTTTGAAGCAGATTATTATGTCAAAGCTGATGATGATATTTATCTGCGCCCAGATCGACTAGCAACACTTCTAGCTAAGGAGAGAACAGATTCACGAACCTACATTGGTTGCATGAAGAAAGGTCCAGTGATAACTGACCCAAAAATGAAATGGTATGAGAAATCAGGACATCTGATTGGGAATGAATACTTTCAACATGCCTATGCTCCTATTTATGTTCTATCTGCAGAGGTGGTTGTGTCATTGGCAACTGCTAAAAATAACAGCTTTCAGTTTGAGAATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050896 GO:0051865 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

295

Amino Acids

33.15

Weight (kDa)

9.53

Isoelectric Point (pI)

39.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Galactosyl_T	PF01762	120 - 289	8e-44	Galactosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48800 AT5G23680
fragaria_vesca	FvH4_4g22930 FvH4_5g09120 FvH4_5g09120
malus_domestica	MD04G1000300.v1.1 MD06G1133400.v1.1 MD13G1128000.v1.1 MD13G1128300.v1.1 MD14G1149800.v1.1 MD16G1128400.v1.1
prunus_persica	Prupe.5G144600_v2.0.a1 Prupe.5G144600_v2.0.a1
pyrus_communis	pycom13g11100 pycom14g12450 pycom16g10890
rosa_chinensis	RchiOBHm_Chr4g0429181 RchiOBHm_Chr7g0189071
rosa_laevigata	RLG00000004635 RLG00000007089
rosa_multiflora	Rmu_co7993242.1_g000001 Rmu_co8485617.1_g000001 Rmu_sc0004290.1_g000008 Rmu_sc0004872.1_g000001
rosa_rugosa	Rorug04G0233700 Rorug06G0496000
rosa_samantha	Rh4AG289600 Rh4BG295600 Rh4CG311100 Rh4DG292500 Rh7AG100400 Rh7BG102900 Rh7CG104400 Rh7DG102400
rosa_wichuraiana	Rw4G025090 Rw5G022550 Rw7G008680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	377
AccBSI	CCGCTC	1 cut(s)	198
AccII	CGCG	1 cut(s)	366
AciI	CCGC	9 cut(s)	19, 93, 186, 193, 196, 225, 364, 369, 587
AclI	AACGTT	1 cut(s)	569
AcsI	RAATTY	1 cut(s)	333
AcuI	CTGAAG	1 cut(s)	476
AfaI	GTAC	1 cut(s)	512
AfiI	CCNNNNNNNGG	1 cut(s)	348
AgsI	TTSAA	5 cut(s)	305, 583, 596, 605, 794
AluBI	AGCT	9 cut(s)	67, 316, 356, 428, 440, 490, 626, 674, 867
AluI	AGCT	9 cut(s)	67, 316, 356, 428, 440, 490, 626, 674, 867
Alw26I	GTCTC	2 cut(s)	413, 510
AoxI	GGCC	2 cut(s)	157, 308
ApeKI	GCWGC	1 cut(s)	353
ApoI	RAATTY	1 cut(s)	333
Asp700I	GAANNNNTTC	2 cut(s)	688, 789
AspLEI	GCGC	3 cut(s)	368, 378, 648
AspS9I	GGNCC	2 cut(s)	345, 722
AsuC2I	CCSGG	3 cut(s)	295, 343, 349
AsuHPI	GGTGA	2 cut(s)	8, 538
AvaII	GGWCC	2 cut(s)	345, 722
BbsI	GAAGAC	1 cut(s)	18
BbvI	GCAGC	1 cut(s)	365
BccI	CCATC	2 cut(s)	398, 475
BceAI	ACGGC	2 cut(s)	164, 323
BcnI	CCSGG	3 cut(s)	295, 343, 349
BcoDI	GTCTC	2 cut(s)	413, 510
BfaI	CTAG	2 cut(s)	659, 671
BfmI	CTRYAG	1 cut(s)	825
BisI	GCNGC	7 cut(s)	186, 196, 226, 354, 364, 369, 588
BlsI	GCNGC	7 cut(s)	187, 197, 227, 355, 365, 370, 589
Bme1390I	CCNGG	3 cut(s)	295, 343, 349
Bme18I	GGWCC	2 cut(s)	345, 722
BmgT120I	GGNCC	2 cut(s)	345, 722
BmiI	GGNNCC	1 cut(s)	346
BmrFI	CCNGG	3 cut(s)	295, 343, 349
BmsI	GCATC	2 cut(s)	212, 460
BpiI	GAAGAC	1 cut(s)	18
Bpu10I	CCTNAGC	2 cut(s)	312, 675
BpuEI	CTTGAG	2 cut(s)	56, 433
BpuMI	CCSGG	3 cut(s)	295, 343, 349
BsaBI	GATNNNNATC	2 cut(s)	533, 639
BsaI	GGTCTC	1 cut(s)	413
BsaJI	CCNNGG	2 cut(s)	348, 560
BsaXI	ACNNNNNCTCC	4 cut(s)	97, 127, 248, 278
Bsc4I	CCNNNNNNNGG	1 cut(s)	348
Bse1I	ACTGG	3 cut(s)	22, 436, 725
Bse8I	GATNNNNATC	2 cut(s)	533, 639
BseDI	CCNNGG	2 cut(s)	348, 560
BseGI	GGATG	1 cut(s)	547
BseJI	GATNNNNATC	2 cut(s)	533, 639
BseLI	CCNNNNNNNGG	1 cut(s)	348
BseNI	ACTGG	3 cut(s)	22, 436, 725
BseRI	GAGGAG	3 cut(s)	49, 59, 140
BseXI	GCAGC	1 cut(s)	365
Bsh1236I	CGCG	1 cut(s)	366
Bsh1285I	CGRYCG	1 cut(s)	464
BshFI	GGCC	2 cut(s)	159, 310
BsiEI	CGRYCG	1 cut(s)	464
BsiSI	CCGG	4 cut(s)	165, 294, 342, 348
BslFI	GGGAC	1 cut(s)	86
BslI	CCNNNNNNNGG	1 cut(s)	348
BsmAI	GTCTC	2 cut(s)	413, 510
BsmFI	GGGAC	1 cut(s)	86
BsmI	GAATGC	1 cut(s)	251
BsnI	GGCC	2 cut(s)	159, 310
Bso31I	GGTCTC	1 cut(s)	413
Bsp143I	GATC	3 cut(s)	358, 461, 652
Bsp19I	CCATGG	1 cut(s)	560
BspACI	CCGC	9 cut(s)	19, 93, 186, 193, 196, 225, 364, 369, 587
BspANI	GGCC	2 cut(s)	159, 310
BspFNI	CGCG	1 cut(s)	366
BspLI	GGNNCC	1 cut(s)	346
BspMAI	CTGCAG	1 cut(s)	829
BspTNI	GGTCTC	1 cut(s)	413
BsrBI	CCGCTC	1 cut(s)	198
BsrI	ACTGG	3 cut(s)	22, 436, 725
BssECI	CCNNGG	2 cut(s)	348, 560
BssMI	GATC	3 cut(s)	358, 461, 652
BssT1I	CCWWGG	1 cut(s)	560
Bst4CI	ACNGT	1 cut(s)	600
Bst6I	CTCTTC	1 cut(s)	14
BstDEI	CTNAG	2 cut(s)	312, 675
BstDSI	CCRYGG	1 cut(s)	560
BstF5I	GGATG	1 cut(s)	547
BstFNI	CGCG	1 cut(s)	366
BstHHI	GCGC	3 cut(s)	368, 378, 648
BstKTI	GATC	3 cut(s)	361, 464, 655
BstMAI	GTCTC	2 cut(s)	413, 510
BstMBI	GATC	3 cut(s)	358, 461, 652
BstMCI	CGRYCG	1 cut(s)	464
BstMWI	GCNNNNNNNGC	2 cut(s)	73, 185
BstNSI	RCATGY	1 cut(s)	800
BstSCI	CCNGG	3 cut(s)	293, 341, 347
BstSFI	CTRYAG	1 cut(s)	825
BstUI	CGCG	1 cut(s)	366
BstV1I	GCAGC	1 cut(s)	365
BstV2I	GAAGAC	1 cut(s)	18
BsuRI	GGCC	2 cut(s)	159, 310
BtgI	CCRYGG	1 cut(s)	560
BtsCI	GGATG	1 cut(s)	547
BtsIMutI	CAGTG	1 cut(s)	732
CfoI	GCGC	3 cut(s)	368, 378, 648
Cfr13I	GGNCC	2 cut(s)	345, 722
Csp6I	GTAC	1 cut(s)	511
CviAII	CATG	3 cut(s)	561, 712, 797
CviQI	GTAC	1 cut(s)	511
DdeI	CTNAG	2 cut(s)	312, 675
DpnI	GATC	3 cut(s)	360, 463, 654
DpnII	GATC	3 cut(s)	358, 461, 652
Eam1104I	CTCTTC	1 cut(s)	14
EarI	CTCTTC	1 cut(s)	14
EciI	GGCGGA	2 cut(s)	82, 182
Eco130I	CCWWGG	1 cut(s)	560
Eco31I	GGTCTC	1 cut(s)	413
Eco47I	GGWCC	2 cut(s)	345, 722
Eco57I	CTGAAG	1 cut(s)	476
EcoRI	GAATTC	1 cut(s)	333
EcoT14I	CCWWGG	1 cut(s)	560
ErhI	CCWWGG	1 cut(s)	560
FaeI	CATG	3 cut(s)	564, 715, 800
FaiI	YATR	8 cut(s)	549, 562, 618, 713, 756, 798, 804, 816
FaqI	GGGAC	1 cut(s)	86
FatI	CATG	3 cut(s)	560, 711, 796
Fnu4HI	GCNGC	7 cut(s)	186, 196, 226, 354, 364, 369, 588
FokI	GGATG	1 cut(s)	554
Fsp4HI	GCNGC	7 cut(s)	186, 196, 226, 354, 364, 369, 588
FspBI	CTAG	2 cut(s)	659, 671
FspI	TGCGCA	1 cut(s)	377
GlaI	GCGC	3 cut(s)	367, 377, 647
GluI	GCNGC	7 cut(s)	186, 196, 226, 354, 364, 369, 588
HaeIII	GGCC	2 cut(s)	159, 310
HapII	CCGG	4 cut(s)	165, 294, 342, 348
HhaI	GCGC	3 cut(s)	368, 378, 648
Hin1II	CATG	3 cut(s)	564, 715, 800
Hin6I	GCGC	3 cut(s)	366, 376, 646
HinP1I	GCGC	3 cut(s)	366, 376, 646
HindIII	AAGCTT	1 cut(s)	314
HinfI	GANTC	1 cut(s)	689
HpaII	CCGG	4 cut(s)	165, 294, 342, 348
HphI	GGTGA	2 cut(s)	8, 538
Hpy188I	TCNGA	8 cut(s)	221, 235, 248, 332, 339, 397, 495, 774
Hpy188III	TCNNGA	3 cut(s)	412, 693, 765
Hpy99I	CGWCG	2 cut(s)	185, 332
HpyAV	CCTTC	2 cut(s)	402, 566
HpyCH4III	ACNGT	1 cut(s)	600
HpyCH4IV	ACGT	1 cut(s)	569
HpyCH4V	TGCA	3 cut(s)	473, 711, 827
HpyF10VI	GCNNNNNNNGC	2 cut(s)	73, 185
HpyF3I	CTNAG	2 cut(s)	312, 675
HpySE526I	ACGT	1 cut(s)	569
Hsp92II	CATG	3 cut(s)	564, 715, 800
HspAI	GCGC	3 cut(s)	366, 376, 646
Kzo9I	GATC	3 cut(s)	358, 461, 652
LmnI	GCTCC	3 cut(s)	72, 203, 811
Lsp1109I	GCAGC	1 cut(s)	365
LweI	GCATC	2 cut(s)	212, 460
MaeI	CTAG	2 cut(s)	659, 671
MaeII	ACGT	1 cut(s)	569
MalI	GATC	3 cut(s)	360, 463, 654
MbiI	CCGCTC	1 cut(s)	198
MboI	GATC	3 cut(s)	358, 461, 652
MboII	GAAGA	5 cut(s)	18, 166, 248, 490, 727
MluCI	AATT	2 cut(s)	268, 333
MmeI	TCCRAC	4 cut(s)	310, 399, 420, 552
MroXI	GAANNNNTTC	2 cut(s)	688, 789
MseI	TTAA	1 cut(s)	886
MslI	CAYNNNNRTG	1 cut(s)	801
MspA1I	CMGCKG	1 cut(s)	356
MspI	CCGG	4 cut(s)	165, 294, 342, 348
MspR9I	CCNGG	3 cut(s)	295, 343, 349
Mva1269I	GAATGC	1 cut(s)	251
MvnI	CGCG	1 cut(s)	366
MwoI	GCNNNNNNNGC	2 cut(s)	73, 185
NciI	CCSGG	3 cut(s)	295, 343, 349
NcoI	CCATGG	1 cut(s)	560
NdeII	GATC	3 cut(s)	358, 461, 652
NlaIII	CATG	3 cut(s)	564, 715, 800
NlaIV	GGNNCC	1 cut(s)	346
NmeAIII	GCCGAG	1 cut(s)	300
NsbI	TGCGCA	1 cut(s)	377
NspI	RCATGY	1 cut(s)	800
PctI	GAATGC	1 cut(s)	251
PdmI	GAANNNNTTC	2 cut(s)	688, 789
PfeI	GAWTC	1 cut(s)	689
PflFI	GACNNNGTC	1 cut(s)	343
PkrI	GCNGC	7 cut(s)	187, 197, 227, 355, 365, 370, 589
Ple19I	CGATCG	1 cut(s)	464
Psp1406I	AACGTT	1 cut(s)	569
PspN4I	GGNNCC	1 cut(s)	346
PspPI	GGNCC	2 cut(s)	345, 722
PstI	CTGCAG	1 cut(s)	829
PsyI	GACNNNGTC	1 cut(s)	343
PvuI	CGATCG	1 cut(s)	464
PvuII	CAGCTG	1 cut(s)	356
RsaI	GTAC	1 cut(s)	512
RsaNI	GTAC	1 cut(s)	511
RseI	CAYNNNNRTG	1 cut(s)	801
SaqAI	TTAA	1 cut(s)	886
SatI	GCNGC	7 cut(s)	186, 196, 226, 354, 364, 369, 588
Sau3AI	GATC	3 cut(s)	358, 461, 652
Sau96I	GGNCC	2 cut(s)	345, 722
ScrFI	CCNGG	3 cut(s)	295, 343, 349
SfaNI	GCATC	2 cut(s)	212, 460
SfcI	CTRYAG	1 cut(s)	825
SinI	GGWCC	2 cut(s)	345, 722
SmiMI	CAYNNNNRTG	1 cut(s)	801
SmlI	CTYRAG	2 cut(s)	71, 412
SmoI	CTYRAG	2 cut(s)	71, 412
Sse9I	AATT	2 cut(s)	268, 333
SsiI	CCGC	9 cut(s)	19, 93, 186, 193, 196, 225, 364, 369, 587
SspMI	CTAG	2 cut(s)	659, 671
StyD4I	CCNGG	3 cut(s)	293, 341, 347
StyI	CCWWGG	1 cut(s)	560
TaaI	ACNGT	1 cut(s)	600
TaiI	ACGT	1 cut(s)	572
TaqI	TCGA	2 cut(s)	464, 655
TasI	AATT	2 cut(s)	268, 333
TatI	WGTACW	1 cut(s)	510
TauI	GCSGC	6 cut(s)	188, 198, 228, 366, 371, 590
TfiI	GAWTC	1 cut(s)	689
Tru1I	TTAA	1 cut(s)	886
Tru9I	TTAA	1 cut(s)	886
TscAI	CASTG	1 cut(s)	732
TseI	GCWGC	1 cut(s)	353
TspDTI	ATGAA	4 cut(s)	558, 728, 761, 798
TspGWI	ACGGA	1 cut(s)	88
TspRI	CASTG	1 cut(s)	732
Tth111I	GACNNNGTC	1 cut(s)	343
VpaK11BI	GGWCC	2 cut(s)	345, 722
XapI	RAATTY	1 cut(s)	333
XceI	RCATGY	1 cut(s)	800
XcmI	CCANNNNNNNNNTGG	1 cut(s)	747
XmnI	GAANNNNTTC	2 cut(s)	688, 789
XspI	CTAG	2 cut(s)	659, 671

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.