Rmu_co7993242.1_g000001

Sterile alpha motif.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co7993242.1
OG0003205
Physical Location & Seq
Reverse (-)
244 .. 522
279 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co7993242.1_g000001.1.cds

Sequence Viewer

Length: 244 bp
tcggcggagaacgaggcgcacaattggcaggagccgaggagggttggggggaactgagcgaggggatcggagagcagggaaaacgacgccgttggggttgagtcggtatacgccggtgttcgagatacttgaggtgttaccgatgctgacattggaggatcttaaagatatggggataaactccgtcggatccaggcggaaaatgtacagtgatatccagaagcttcgcaaggggttctcgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAM_1 SAM_2

Protein Analysis

80

Amino Acids

9.07

Weight (kDa)

11.48

Isoelectric Point (pI)

71.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 108
AciI CCGC 2 cut(s) 5, 197
AclWI GGATC 4 cut(s) 73, 166, 184, 197
AcyI GRCGYC 1 cut(s) 87
AfaI GTAC 1 cut(s) 207
AjnI CCWGG 1 cut(s) 192
AluBI AGCT 1 cut(s) 224
AluI AGCT 1 cut(s) 224
AlwI GGATC 4 cut(s) 73, 166, 184, 197
AspLEI GCGC 1 cut(s) 19
BamHI GGATCC 1 cut(s) 189
BauI CACGAG 1 cut(s) 239
BceAI ACGGC 1 cut(s) 74
BciT130I CCWGG 1 cut(s) 194
Bme1390I CCNGG 1 cut(s) 194
BmiI GGNNCC 2 cut(s) 33, 191
BmrFI CCNGG 1 cut(s) 194
BmsI GCATC 1 cut(s) 133
BpuEI CTTGAG 1 cut(s) 150
BsaHI GRCGYC 1 cut(s) 87
BsaJI CCNNGG 1 cut(s) 35
Bse118I RCCGGY 1 cut(s) 113
BseBI CCWGG 1 cut(s) 194
BseDI CCNNGG 1 cut(s) 35
BseMII CTCAG 1 cut(s) 46
BseRI GAGGAG 1 cut(s) 52
BsiSI CCGG 1 cut(s) 114
Bsp1407I TGTACA 1 cut(s) 205
Bsp143I GATC 3 cut(s) 65, 158, 189
BspACI CCGC 2 cut(s) 5, 197
BspCNI CTCAG 1 cut(s) 47
BspLI GGNNCC 2 cut(s) 33, 191
BspPI GGATC 4 cut(s) 73, 166, 184, 197
BsrFI RCCGGY 1 cut(s) 113
BsrGI TGTACA 1 cut(s) 205
BssAI RCCGGY 1 cut(s) 113
BssECI CCNNGG 1 cut(s) 35
BssMI GATC 3 cut(s) 65, 158, 189
BssNAI GTATAC 1 cut(s) 109
BssNI GRCGYC 1 cut(s) 87
BssSI CACGAG 1 cut(s) 239
Bst1107I GTATAC 1 cut(s) 109
Bst2BI CACGAG 1 cut(s) 239
Bst2UI CCWGG 1 cut(s) 194
Bst4CI ACNGT 1 cut(s) 210
BstACI GRCGYC 1 cut(s) 87
BstAUI TGTACA 1 cut(s) 205
BstDEI CTNAG 1 cut(s) 55
BstHHI GCGC 1 cut(s) 19
BstKTI GATC 3 cut(s) 68, 161, 192
BstMBI GATC 3 cut(s) 65, 158, 189
BstMWI GCNNNNNNNGC 1 cut(s) 25
BstNI CCWGG 1 cut(s) 194
BstSCI CCNGG 1 cut(s) 192
BstX2I RGATCY 2 cut(s) 158, 189
BstYI RGATCY 2 cut(s) 158, 189
BstZ17I GTATAC 1 cut(s) 109
BtsIMutI CAGTG 1 cut(s) 215
CfoI GCGC 1 cut(s) 19
Cfr10I RCCGGY 1 cut(s) 113
CseI GACGC 1 cut(s) 95
Csp6I GTAC 1 cut(s) 206
CviJI RGCY 2 cut(s) 34, 224
CviKI_1 RGCY 2 cut(s) 34, 224
CviQI GTAC 1 cut(s) 206
DdeI CTNAG 1 cut(s) 55
DpnI GATC 3 cut(s) 67, 160, 191
DpnII GATC 3 cut(s) 65, 158, 189
EciI GGCGGA 2 cut(s) 20, 212
Eco32I GATATC 1 cut(s) 215
EcoRII CCWGG 1 cut(s) 192
EcoRV GATATC 1 cut(s) 215
FaiI YATR 2 cut(s) 109, 171
FblI GTMKAC 1 cut(s) 108
GlaI GCGC 1 cut(s) 18
HapII CCGG 1 cut(s) 114
HgaI GACGC 1 cut(s) 95
HhaI GCGC 1 cut(s) 19
Hin1I GRCGYC 1 cut(s) 87
Hin6I GCGC 1 cut(s) 17
HinP1I GCGC 1 cut(s) 17
HindIII AAGCTT 1 cut(s) 222
HinfI GANTC 1 cut(s) 101
HpaII CCGG 1 cut(s) 114
Hpy166II GTNNAC 1 cut(s) 109
Hpy188I TCNGA 2 cut(s) 70, 189
Hpy188III TCNNGA 3 cut(s) 122, 218, 241
Hpy8I GTNNAC 1 cut(s) 109
Hpy99I CGWCG 2 cut(s) 89, 189
HpyCH4III ACNGT 1 cut(s) 210
HpyF10VI GCNNNNNNNGC 1 cut(s) 25
HpyF3I CTNAG 1 cut(s) 55
Hsp92I GRCGYC 1 cut(s) 87
HspAI GCGC 1 cut(s) 17
Kzo9I GATC 3 cut(s) 65, 158, 189
LmnI GCTCC 1 cut(s) 31
LpnPI CCDG 6 cut(s) 14, 61, 127, 179, 206, 231
LweI GCATC 1 cut(s) 133
MaeIII GTNAC 1 cut(s) 136
MalI GATC 3 cut(s) 67, 160, 191
MboI GATC 3 cut(s) 65, 158, 189
MfeI CAATTG 1 cut(s) 22
MflI RGATCY 2 cut(s) 158, 189
MluCI AATT 1 cut(s) 22
MlyI GAGTC 1 cut(s) 110
MmeI TCCRAC 1 cut(s) 167
MnlI CCTC 6 cut(s) 7, 30, 33, 54, 125, 149
MseI TTAA 1 cut(s) 163
MspI CCGG 1 cut(s) 114
MspR9I CCNGG 1 cut(s) 194
MunI CAATTG 1 cut(s) 22
MvaI CCWGG 1 cut(s) 194
MwoI GCNNNNNNNGC 1 cut(s) 25
NdeII GATC 3 cut(s) 65, 158, 189
NlaIV GGNNCC 2 cut(s) 33, 191
NmeAIII GCCGAG 1 cut(s) 60
PleI GAGTC 1 cut(s) 109
PpsI GAGTC 1 cut(s) 109
Psp6I CCWGG 1 cut(s) 192
PspGI CCWGG 1 cut(s) 192
PspN4I GGNNCC 2 cut(s) 33, 191
PsuI RGATCY 2 cut(s) 158, 189
RsaI GTAC 1 cut(s) 207
RsaNI GTAC 1 cut(s) 206
SaqAI TTAA 1 cut(s) 163
Sau3AI GATC 3 cut(s) 65, 158, 189
SchI GAGTC 1 cut(s) 110
ScrFI CCNGG 1 cut(s) 194
SetI ASST 2 cut(s) 136, 226
SfaNI GCATC 1 cut(s) 133
SgrAI CRCCGGYG 1 cut(s) 113
SmlI CTYRAG 1 cut(s) 129
SmoI CTYRAG 1 cut(s) 129
Sse9I AATT 1 cut(s) 22
SsiI CCGC 2 cut(s) 5, 197
StyD4I CCNGG 1 cut(s) 192
TaaI ACNGT 1 cut(s) 210
TaqI TCGA 1 cut(s) 121
TasI AATT 1 cut(s) 22
TatI WGTACW 1 cut(s) 205
Tru1I TTAA 1 cut(s) 163
Tru9I TTAA 1 cut(s) 163
TscAI CASTG 1 cut(s) 215
TspGWI ACGGA 1 cut(s) 173
TspRI CASTG 1 cut(s) 215
XmiI GTMKAC 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.