Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0003205

Physical Location & Seq

Genomic Coordinates Forward (+)

51080080 .. 51088199

Gene Structure 8120 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G025090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGCAGCTGAGTTACAGCCGTTGGAGGCTACAATCCCCGCCGGCCCAACCGCCACCGCCACGTCGACACCGTCACCTCTTATAACCCCAACGGCGACGGCCGCAATCGCAACCACAACAGCAGCAGCAGCAGCAGCAACAGCAACGGCTCTACACTCGGGCGAAAACCCGGGCCCCCAATTCCAACTGGGCCAGAAACGGCAGCGCCGGCCCAGCGTCCGGTTAGGCGAGATCGGCGACCAGCCCGCCGCCACCGTCTCAATCGACTCACACATGCGAAGGGCCAAGTACCCCTGGAAGCTCCCGAAGGACTCTAGTAAATCCGTCAAGGCCAGGTCGATTACGAACCTCGTCAACGGCCACGATTCGACTGAGATAGATGATCGGAACCAGAACGGCGACGGGGGATTCGAGTTCGGGAGCAGGAAGATCAAATCGAAGCGGGCGGCGACGACGAAGAGAGTCCGATCGAATTGGATTTCGAATTCGAAGATTGACGAGGGAGGGGATAGCCGGGAGGAGGGGGAGGGGTGGATGAGCGCAGATCCCGATAGGGATAGTCCGGTAAGGGATGAGAGCCCGGTGCAGTCGGCGGAGAACGAGGCGCACAATTGGGAGGAGCAGAGGAGGGTTGGGGGGAATAATTGGGGGAGGGGATCGGAGAGCAGGGAAAACGACGCCGTTGAGGCGGATAATATGCCGGAGTCGAATTGGAGCGGAGTGAGGTCGTGGCTAATAGAGCTGGGCTTGAGTCGGTATACGCCGGTGTTCGAGATACATGAGGTGGATGATGAGGTGTTGCCGATGCTGACATTGGAGGATCTTAAAGATATGGGGATAAACGCCGTAGGATCCAGGCGGAAAATGTACAGTGCTATCCAGAAGCTTCGCAAGGGCTTTTCGAAAATCAAATCGAAGCGGGCGGCAACGATCGTATTGGATTTCGAATTCGAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAM_1 SAM_2

Protein Analysis

319

Amino Acids

34.93

Weight (kDa)

5.88

Isoelectric Point (pI)

55.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAM_1	PF00536	240 - 297	2.4e-13	SAM domain (Sterile alpha motif)
SAM_2	PF07647	241 - 297	1.4e-13	SAM domain (Sterile alpha motif)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48800 AT5G23680
fragaria_vesca	FvH4_4g22930 FvH4_5g09120 FvH4_5g09120
malus_domestica	MD04G1000300.v1.1 MD06G1133400.v1.1 MD13G1128000.v1.1 MD13G1128300.v1.1 MD14G1149800.v1.1 MD16G1128400.v1.1
prunus_persica	Prupe.5G144600_v2.0.a1 Prupe.5G144600_v2.0.a1
pyrus_communis	pycom13g11100 pycom14g12450 pycom16g10890
rosa_chinensis	RchiOBHm_Chr4g0429181 RchiOBHm_Chr7g0189071
rosa_laevigata	RLG00000004635 RLG00000007089
rosa_multiflora	Rmu_co7993242.1_g000001 Rmu_co8485617.1_g000001 Rmu_sc0004290.1_g000008 Rmu_sc0004872.1_g000001
rosa_rugosa	Rorug04G0233700 Rorug06G0496000
rosa_samantha	Rh4AG289600 Rh4BG295600 Rh4CG311100 Rh4DG292500 Rh7AG100400 Rh7BG102900 Rh7CG104400 Rh7DG102400
rosa_wichuraiana	Rw4G025090 Rw5G022550 Rw7G008680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	83
AccBSI	CCGCTC	1 cut(s)	717
AccI	GTMKAC	2 cut(s)	65, 758
AclWI	GGATC	5 cut(s)	539, 664, 828, 846, 859
AcoI	YGGCCR	2 cut(s)	99, 358
AcsI	RAATTY	2 cut(s)	484, 947
AcyI	GRCGYC	1 cut(s)	678
AfaI	GTAC	2 cut(s)	290, 869
AfiI	CCNNNNNNNGG	2 cut(s)	219, 520
AjiI	CACGTC	1 cut(s)	63
AjnI	CCWGG	3 cut(s)	293, 332, 854
AluBI	AGCT	4 cut(s)	8, 301, 742, 886
AluI	AGCT	4 cut(s)	8, 301, 742, 886
Alw26I	GTCTC	1 cut(s)	262
AlwI	GGATC	5 cut(s)	539, 664, 828, 846, 859
Ama87I	CYCGRG	2 cut(s)	157, 169
AoxI	GGCC	8 cut(s)	43, 99, 172, 190, 209, 282, 330, 358
ApaI	GGGCCC	1 cut(s)	176
ApeKI	GCWGC	7 cut(s)	5, 122, 125, 128, 131, 134, 202
ApoI	RAATTY	2 cut(s)	484, 947
ArsI	GACNNNNNNTTYG	2 cut(s)	392, 424
AspLEI	GCGC	3 cut(s)	207, 542, 607
AspS9I	GGNCC	6 cut(s)	44, 172, 173, 190, 210, 282
AsuC2I	CCSGG	4 cut(s)	170, 171, 515, 581
AsuHPI	GGTGA	1 cut(s)	66
AsuII	TTCGAA	5 cut(s)	482, 488, 902, 945, 951
AvaI	CYCGRG	2 cut(s)	157, 169
BaeGI	GKGCMC	1 cut(s)	176
BamHI	GGATCC	1 cut(s)	851
BanII	GRGCYC	2 cut(s)	176, 581
BbvI	GCAGC	7 cut(s)	17, 134, 137, 140, 143, 146, 214
BceAI	ACGGC	9 cut(s)	4, 108, 114, 162, 215, 373, 412, 665, 830
BciT130I	CCWGG	3 cut(s)	295, 334, 856
BcnI	CCSGG	4 cut(s)	170, 171, 515, 581
BcoDI	GTCTC	1 cut(s)	262
BfaI	CTAG	1 cut(s)	315
BfoI	RGCGCY	1 cut(s)	208
BglI	GCCNNNNNGGC	1 cut(s)	686
Bme1390I	CCNGG	7 cut(s)	170, 171, 295, 334, 515, 581, 856
BmeT110I	CYCGRG	2 cut(s)	157, 169
BmgBI	CACGTC	1 cut(s)	63
BmgT120I	GGNCC	6 cut(s)	44, 172, 173, 190, 210, 282
BmiI	GGNNCC	4 cut(s)	174, 175, 389, 853
BmrFI	CCNGG	7 cut(s)	170, 171, 295, 334, 515, 581, 856
BmrI	ACTGGG	1 cut(s)	197
BmsI	GCATC	1 cut(s)	795
BmuI	ACTGGG	1 cut(s)	197
Bpu14I	TTCGAA	5 cut(s)	482, 488, 902, 945, 951
BpuEI	CTTGAG	1 cut(s)	769
BpuMI	CCSGG	4 cut(s)	170, 171, 515, 581
BsaHI	GRCGYC	1 cut(s)	678
BsaJI	CCNNGG	2 cut(s)	169, 293
BsaWI	WCCGGW	2 cut(s)	219, 562
Bsc4I	CCNNNNNNNGG	2 cut(s)	219, 520
Bse118I	RCCGGY	3 cut(s)	41, 207, 763
Bse1I	ACTGG	1 cut(s)	192
BseBI	CCWGG	3 cut(s)	295, 334, 856
BseDI	CCNNGG	2 cut(s)	169, 293
BseGI	GGATG	3 cut(s)	540, 577, 793
BseLI	CCNNNNNNNGG	2 cut(s)	219, 520
BseMII	CTCAG	1 cut(s)	363
BseNI	ACTGG	1 cut(s)	192
BseRI	GAGGAG	3 cut(s)	533, 632, 640
BseSI	GKGCMC	1 cut(s)	176
BseX3I	CGGCCG	1 cut(s)	99
BseXI	GCAGC	7 cut(s)	17, 134, 137, 140, 143, 146, 214
BseYI	CCCAGC	2 cut(s)	212, 742
BsgI	GTGCAG	1 cut(s)	605
Bsh1285I	CGRYCG	3 cut(s)	102, 470, 933
BshFI	GGCC	8 cut(s)	45, 101, 174, 192, 211, 284, 332, 360
BsiEI	CGRYCG	3 cut(s)	102, 470, 933
BsiHKCI	CYCGRG	2 cut(s)	157, 169
BsiSI	CCGG	9 cut(s)	42, 170, 208, 220, 514, 563, 581, 701, 764
BslI	CCNNNNNNNGG	2 cut(s)	219, 520
BsmAI	GTCTC	1 cut(s)	262
BsmBI	CGTCTC	1 cut(s)	262
BsnI	GGCC	8 cut(s)	45, 101, 174, 192, 211, 284, 332, 360
BsoBI	CYCGRG	2 cut(s)	157, 169
Bsp119I	TTCGAA	5 cut(s)	482, 488, 902, 945, 951
Bsp120I	GGGCCC	1 cut(s)	172
Bsp1286I	GDGCHC	2 cut(s)	176, 581
Bsp1407I	TGTACA	1 cut(s)	867
Bsp143I	GATC	9 cut(s)	231, 382, 429, 467, 544, 656, 820, 851, 930
BspANI	GGCC	8 cut(s)	45, 101, 174, 192, 211, 284, 332, 360
BspCNI	CTCAG	1 cut(s)	364
BspLI	GGNNCC	4 cut(s)	174, 175, 389, 853
BspPI	GGATC	5 cut(s)	539, 664, 828, 846, 859
BspT104I	TTCGAA	5 cut(s)	482, 488, 902, 945, 951
BsrBI	CCGCTC	1 cut(s)	717
BsrFI	RCCGGY	3 cut(s)	41, 207, 763
BsrGI	TGTACA	1 cut(s)	867
BsrI	ACTGG	1 cut(s)	192
BssAI	RCCGGY	3 cut(s)	41, 207, 763
BssECI	CCNNGG	2 cut(s)	169, 293
BssMI	GATC	9 cut(s)	231, 382, 429, 467, 544, 656, 820, 851, 930
BssNAI	GTATAC	1 cut(s)	759
BssNI	GRCGYC	1 cut(s)	678
Bst1107I	GTATAC	1 cut(s)	759
Bst2UI	CCWGG	3 cut(s)	295, 334, 856
Bst4CI	ACNGT	3 cut(s)	72, 256, 872
Bst6I	CTCTTC	1 cut(s)	452
BstACI	GRCGYC	1 cut(s)	678
BstAUI	TGTACA	1 cut(s)	867
BstBI	TTCGAA	5 cut(s)	482, 488, 902, 945, 951
BstC8I	GCNNGC	5 cut(s)	43, 209, 246, 444, 921
BstDEI	CTNAG	2 cut(s)	9, 372
BstF5I	GGATG	3 cut(s)	540, 577, 793
BstH2I	RGCGCY	1 cut(s)	208
BstHHI	GCGC	3 cut(s)	207, 542, 607
BstKTI	GATC	9 cut(s)	234, 385, 432, 470, 547, 659, 823, 854, 933
BstMAI	GTCTC	1 cut(s)	262
BstMBI	GATC	9 cut(s)	231, 382, 429, 467, 544, 656, 820, 851, 930
BstMCI	CGRYCG	3 cut(s)	102, 470, 933
BstNI	CCWGG	3 cut(s)	295, 334, 856
BstNSI	RCATGY	1 cut(s)	277
BstSCI	CCNGG	7 cut(s)	168, 169, 293, 332, 513, 579, 854
BstSLI	GKGCMC	1 cut(s)	176
BstV1I	GCAGC	7 cut(s)	17, 134, 137, 140, 143, 146, 214
BstX2I	RGATCY	3 cut(s)	544, 820, 851
BstYI	RGATCY	3 cut(s)	544, 820, 851
BstZ17I	GTATAC	1 cut(s)	759
BstZI	CGGCCG	1 cut(s)	99
BsuRI	GGCC	8 cut(s)	45, 101, 174, 192, 211, 284, 332, 360
BtrI	CACGTC	1 cut(s)	63
BtsCI	GGATG	3 cut(s)	540, 577, 793
BtsIMutI	CAGTG	1 cut(s)	877
Cac8I	GCNNGC	5 cut(s)	43, 209, 246, 444, 921
CfoI	GCGC	3 cut(s)	207, 542, 607
Cfr10I	RCCGGY	3 cut(s)	41, 207, 763
Cfr13I	GGNCC	6 cut(s)	44, 172, 173, 190, 210, 282
Cfr9I	CCCGGG	1 cut(s)	169
CseI	GACGC	2 cut(s)	205, 686
Csp6I	GTAC	2 cut(s)	289, 868
CviAII	CATG	2 cut(s)	274, 779
CviQI	GTAC	2 cut(s)	289, 868
DdeI	CTNAG	2 cut(s)	9, 372
DpnI	GATC	9 cut(s)	233, 384, 431, 469, 546, 658, 822, 853, 932
DpnII	GATC	9 cut(s)	231, 382, 429, 467, 544, 656, 820, 851, 930
EaeI	YGGCCR	2 cut(s)	99, 358
EagI	CGGCCG	1 cut(s)	99
Eam1104I	CTCTTC	1 cut(s)	452
EarI	CTCTTC	1 cut(s)	452
EciI	GGCGGA	3 cut(s)	608, 704, 874
EclXI	CGGCCG	1 cut(s)	99
Eco24I	GRGCYC	2 cut(s)	176, 581
Eco52I	CGGCCG	1 cut(s)	99
Eco88I	CYCGRG	2 cut(s)	157, 169
EcoO109I	RGGNCCY	1 cut(s)	173
EcoRI	GAATTC	2 cut(s)	484, 947
EcoRII	CCWGG	3 cut(s)	293, 332, 854
EcoT38I	GRGCYC	2 cut(s)	176, 581
Esp3I	CGTCTC	1 cut(s)	262
FaeI	CATG	2 cut(s)	277, 782
FaiI	YATR	6 cut(s)	83, 275, 698, 759, 780, 833
FatI	CATG	2 cut(s)	273, 778
FauI	CCCGC	4 cut(s)	46, 253, 435, 912
FblI	GTMKAC	2 cut(s)	65, 758
FokI	GGATG	3 cut(s)	547, 584, 800
FriOI	GRGCYC	2 cut(s)	176, 581
FspBI	CTAG	1 cut(s)	315
GlaI	GCGC	3 cut(s)	206, 541, 606
GsaI	CCCAGC	2 cut(s)	216, 746
HaeII	RGCGCY	1 cut(s)	208
HaeIII	GGCC	8 cut(s)	45, 101, 174, 192, 211, 284, 332, 360
HapII	CCGG	9 cut(s)	42, 170, 208, 220, 514, 563, 581, 701, 764
HgaI	GACGC	2 cut(s)	205, 686
HhaI	GCGC	3 cut(s)	207, 542, 607
Hin1I	GRCGYC	1 cut(s)	678
Hin1II	CATG	2 cut(s)	277, 782
Hin6I	GCGC	3 cut(s)	205, 540, 605
HinP1I	GCGC	3 cut(s)	205, 540, 605
HincII	GTYRAC	2 cut(s)	66, 355
HindII	GTYRAC	2 cut(s)	66, 355
HindIII	AAGCTT	1 cut(s)	884
HinfI	GANTC	7 cut(s)	266, 311, 365, 408, 462, 704, 751
HpaII	CCGG	9 cut(s)	42, 170, 208, 220, 514, 563, 581, 701, 764
HphI	GGTGA	1 cut(s)	66
Hpy166II	GTNNAC	3 cut(s)	66, 355, 759
Hpy188I	TCNGA	3 cut(s)	387, 467, 661
Hpy188III	TCNNGA	5 cut(s)	304, 418, 548, 772, 880
Hpy8I	GTNNAC	3 cut(s)	66, 355, 759
Hpy99I	CGWCG	6 cut(s)	67, 100, 404, 454, 457, 680
HpyAV	CCTTC	2 cut(s)	273, 301
HpyCH4III	ACNGT	3 cut(s)	72, 256, 872
HpyCH4IV	ACGT	1 cut(s)	62
HpyCH4V	TGCA	1 cut(s)	586
HpyF3I	CTNAG	2 cut(s)	9, 372
HpySE526I	ACGT	1 cut(s)	62
Hsp92I	GRCGYC	1 cut(s)	678
Hsp92II	CATG	2 cut(s)	277, 782
HspAI	GCGC	3 cut(s)	205, 540, 605
KroI	GCCGGC	2 cut(s)	41, 207
KroNI	GCCGGC	2 cut(s)	43, 209
Kzo9I	GATC	9 cut(s)	231, 382, 429, 467, 544, 656, 820, 851, 930
LmnI	GCTCC	4 cut(s)	306, 420, 619, 714
Lsp1109I	GCAGC	7 cut(s)	17, 134, 137, 140, 143, 146, 214
LweI	GCATC	1 cut(s)	795
MaeI	CTAG	1 cut(s)	315
MaeII	ACGT	1 cut(s)	62
MaeIII	GTNAC	2 cut(s)	12, 72
MalI	GATC	9 cut(s)	233, 384, 431, 469, 546, 658, 822, 853, 932
MbiI	CCGCTC	1 cut(s)	717
MboI	GATC	9 cut(s)	231, 382, 429, 467, 544, 656, 820, 851, 930
MboII	GAAGA	3 cut(s)	439, 469, 502
MfeI	CAATTG	1 cut(s)	610
MflI	RGATCY	3 cut(s)	544, 820, 851
MhlI	GDGCHC	2 cut(s)	176, 581
MluCI	AATT	7 cut(s)	179, 472, 484, 610, 643, 709, 947
MlyI	GAGTC	5 cut(s)	260, 305, 471, 713, 760
MmeI	TCCRAC	1 cut(s)	208
MroNI	GCCGGC	2 cut(s)	41, 207
MseI	TTAA	1 cut(s)	825
MspA1I	CMGCKG	1 cut(s)	8
MspI	CCGG	9 cut(s)	42, 170, 208, 220, 514, 563, 581, 701, 764
MspR9I	CCNGG	7 cut(s)	170, 171, 295, 334, 515, 581, 856
MunI	CAATTG	1 cut(s)	610
MvaI	CCWGG	3 cut(s)	295, 334, 856
NaeI	GCCGGC	2 cut(s)	43, 209
NciI	CCSGG	4 cut(s)	170, 171, 515, 581
NdeII	GATC	9 cut(s)	231, 382, 429, 467, 544, 656, 820, 851, 930
NgoMIV	GCCGGC	2 cut(s)	41, 207
NlaIII	CATG	2 cut(s)	277, 782
NlaIV	GGNNCC	4 cut(s)	174, 175, 389, 853
NmuCI	GTSAC	1 cut(s)	72
NspI	RCATGY	1 cut(s)	277
NspV	TTCGAA	5 cut(s)	482, 488, 902, 945, 951
PcsI	WCGNNNNNNNCGW	2 cut(s)	68, 408
PdiI	GCCGGC	2 cut(s)	43, 209
PfeI	GAWTC	2 cut(s)	365, 408
PflFI	GACNNNGTC	1 cut(s)	70
Ple19I	CGATCG	2 cut(s)	470, 933
PleI	GAGTC	5 cut(s)	260, 305, 470, 712, 759
PpsI	GAGTC	5 cut(s)	260, 305, 470, 712, 759
PsiI	TTATAA	1 cut(s)	83
Psp6I	CCWGG	3 cut(s)	293, 332, 854
PspFI	CCCAGC	2 cut(s)	212, 742
PspGI	CCWGG	3 cut(s)	293, 332, 854
PspN4I	GGNNCC	4 cut(s)	174, 175, 389, 853
PspOMI	GGGCCC	1 cut(s)	172
PspPI	GGNCC	6 cut(s)	44, 172, 173, 190, 210, 282
PsuI	RGATCY	3 cut(s)	544, 820, 851
PsyI	GACNNNGTC	1 cut(s)	70
PvuI	CGATCG	2 cut(s)	470, 933
PvuII	CAGCTG	1 cut(s)	8
RsaI	GTAC	2 cut(s)	290, 869
RsaNI	GTAC	2 cut(s)	289, 868
SalI	GTCGAC	1 cut(s)	64
SaqAI	TTAA	1 cut(s)	825
Sau3AI	GATC	9 cut(s)	231, 382, 429, 467, 544, 656, 820, 851, 930
Sau96I	GGNCC	6 cut(s)	44, 172, 173, 190, 210, 282
SchI	GAGTC	5 cut(s)	260, 305, 471, 713, 760
ScrFI	CCNGG	7 cut(s)	170, 171, 295, 334, 515, 581, 856
SduI	GDGCHC	2 cut(s)	176, 581
SfaNI	GCATC	1 cut(s)	795
SfuI	TTCGAA	5 cut(s)	482, 488, 902, 945, 951
SgrAI	CRCCGGYG	1 cut(s)	763
SmaI	CCCGGG	1 cut(s)	171
SmlI	CTYRAG	1 cut(s)	748
SmoI	CTYRAG	1 cut(s)	748
Sse9I	AATT	7 cut(s)	179, 472, 484, 610, 643, 709, 947
SspMI	CTAG	1 cut(s)	315
StyD4I	CCNGG	7 cut(s)	168, 169, 293, 332, 513, 579, 854
TaaI	ACNGT	3 cut(s)	72, 256, 872
TaiI	ACGT	1 cut(s)	65
TasI	AATT	7 cut(s)	179, 472, 484, 610, 643, 709, 947
TatI	WGTACW	1 cut(s)	867
TauI	GCSGC	4 cut(s)	104, 251, 449, 926
TfiI	GAWTC	2 cut(s)	365, 408
Tru1I	TTAA	1 cut(s)	825
Tru9I	TTAA	1 cut(s)	825
TscAI	CASTG	1 cut(s)	877
TseFI	GTSAC	1 cut(s)	72
TseI	GCWGC	7 cut(s)	5, 122, 125, 128, 131, 134, 202
Tsp45I	GTSAC	1 cut(s)	72
TspGWI	ACGGA	1 cut(s)	313
TspMI	CCCGGG	1 cut(s)	169
TspRI	CASTG	1 cut(s)	877
Tth111I	GACNNNGTC	1 cut(s)	70
XapI	RAATTY	2 cut(s)	484, 947
XceI	RCATGY	1 cut(s)	277
XmaI	CCCGGG	1 cut(s)	169
XmiI	GTMKAC	2 cut(s)	65, 758
XspI	CTAG	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.