Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003205

Physical Location & Seq

Genomic Coordinates Reverse (-)

18095442 .. 18096891

Gene Structure 1450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G48800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGGCGGAATTGCAACCAGTGGATGGTCAGCAAACAAACGGCGGCGTTGTTACTATTCCTGCGTCAACTTCAGCCGAAGCGACGGCGATTGCAGCCGCGGGATCGAAACGATTGAGAAGACCAAGCGTTAGATTAGGCGAAATCGGCGGAGACCAGTACCAGCAGCAGCATCATCACCACGCGGCGGCGGCGGCGTATGATTCACAAGGGAGGAAATCGAAATGGACACCGACGACGACGAGTGGTAATAGAAAAGATACGAGTAAATCGTCGAGGACTCGAACCCTAACGAATTTGAGTTCTGGGTATGAGAATATAGGAACCCTAGATGATGAAAGAGAAGGAAATGTGGATTCTTTTGGTGTTGGGAGTTGGCGGGTTAAGAAACGGGTCGGGTCATCAGCAGCAGCGAAGAGAGTTAGATCCAATTGGGTATCGAAAGTTGGTGATGGGGATGAGAAAATTAGTGGAGGGGAAGAATTGGAAGGTGGGTTTAGGGATTTTAGTAGAGAAGATTCTGAGAGTCCGATAAAGGAAGAGTCTTTGGATAGAGATGGTGGTGGGTTTTATGGTAGAAGAAGGTATGAGAGTAACAATAGTAGTGGCAACAGAGAATTCGAATCGAATATGGATGGAGGAGGAAAAGAAGGGGTGAAGATTTGGCTACAAGAGTTAGGGTTAGGGAGATATTGGCCTATGTTTGAGATACATGAGGTTGATGAAGAGGTTTTACCATTGTTGACATTGGAAGATCTTAAAGATATGGGGATTAATGCTGTTGGATCGAGGAGGAAGATGTTTTGTGCTATTCAAAAGCTTGGTAGGGAGTTCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0007275 GO:0007368 GO:0007389 GO:0007507 GO:0008150 GO:0009799 GO:0009855 GO:0009966 GO:0009968 GO:0010646 GO:0010648 GO:0023051 GO:0023057 GO:0030111 GO:0030178 GO:0032501 GO:0032502 GO:0048513 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0060828 GO:0065007 GO:0072359 GO:0090090 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAM_1 SAM_2

Protein Analysis

278

Amino Acids

30.51

Weight (kDa)

6.27

Isoelectric Point (pI)

47.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAM_1	PF00536	214 - 273	4.3e-13	SAM domain (Sterile alpha motif)
SAM_2	PF07647	217 - 273	8.6e-15	SAM domain (Sterile alpha motif)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48800 AT5G23680
fragaria_vesca	FvH4_4g22930 FvH4_5g09120 FvH4_5g09120
malus_domestica	MD04G1000300.v1.1 MD06G1133400.v1.1 MD13G1128000.v1.1 MD13G1128300.v1.1 MD14G1149800.v1.1 MD16G1128400.v1.1
prunus_persica	Prupe.5G144600_v2.0.a1 Prupe.5G144600_v2.0.a1
pyrus_communis	pycom13g11100 pycom14g12450 pycom16g10890
rosa_chinensis	RchiOBHm_Chr4g0429181 RchiOBHm_Chr7g0189071
rosa_laevigata	RLG00000004635 RLG00000007089
rosa_multiflora	Rmu_co7993242.1_g000001 Rmu_co8485617.1_g000001 Rmu_sc0004290.1_g000008 Rmu_sc0004872.1_g000001
rosa_rugosa	Rorug04G0233700 Rorug06G0496000
rosa_samantha	Rh4AG289600 Rh4BG295600 Rh4CG311100 Rh4DG292500 Rh7AG100400 Rh7BG102900 Rh7CG104400 Rh7DG102400
rosa_wichuraiana	Rw4G025090 Rw5G022550 Rw7G008680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	23
AccII	CGCG	2 cut(s)	98, 182
AclWI	GGATC	3 cut(s)	109, 417, 790
AcsI	RAATTY	2 cut(s)	292, 614
AcuI	CTGAAG	1 cut(s)	54
AfaI	GTAC	1 cut(s)	158
AfiI	CCNNNNNNNGG	2 cut(s)	23, 184
AgsI	TTSAA	1 cut(s)	812
AluBI	AGCT	1 cut(s)	817
AluI	AGCT	1 cut(s)	817
Alw26I	GTCTC	1 cut(s)	144
AlwI	GGATC	3 cut(s)	109, 417, 790
AoxI	GGCC	1 cut(s)	692
ApeKI	GCWGC	5 cut(s)	92, 163, 166, 404, 407
ApoI	RAATTY	2 cut(s)	292, 614
AseI	ATTAAT	1 cut(s)	771
AsuHPI	GGTGA	3 cut(s)	167, 458, 664
AsuII	TTCGAA	1 cut(s)	618
BarI	GAAGNNNNNNTAC	2 cut(s)	714, 746
BbsI	GAAGAC	1 cut(s)	124
BbvI	GCAGC	5 cut(s)	104, 175, 178, 416, 419
BccI	CCATC	4 cut(s)	17, 443, 548, 626
BceAI	ACGGC	2 cut(s)	55, 99
BcoDI	GTCTC	1 cut(s)	144
BfaI	CTAG	1 cut(s)	326
BglII	AGATCT	1 cut(s)	751
BmiI	GGNNCC	1 cut(s)	322
BmsI	GCATC	1 cut(s)	178
BpiI	GAAGAC	1 cut(s)	124
Bpu14I	TTCGAA	1 cut(s)	618
BsaI	GGTCTC	1 cut(s)	144
BsaJI	CCNNGG	1 cut(s)	96
Bsc4I	CCNNNNNNNGG	2 cut(s)	23, 184
Bse1I	ACTGG	2 cut(s)	17, 154
BseDI	CCNNGG	1 cut(s)	96
BseGI	GGATG	3 cut(s)	28, 460, 637
BseLI	CCNNNNNNNGG	2 cut(s)	23, 184
BseMII	CTCAG	1 cut(s)	510
BseNI	ACTGG	2 cut(s)	17, 154
BseRI	GAGGAG	2 cut(s)	651, 802
BseXI	GCAGC	5 cut(s)	104, 175, 178, 416, 419
Bsh1236I	CGCG	2 cut(s)	98, 182
BshFI	GGCC	1 cut(s)	694
BslI	CCNNNNNNNGG	2 cut(s)	23, 184
BsmAI	GTCTC	1 cut(s)	144
BsnI	GGCC	1 cut(s)	694
Bso31I	GGTCTC	1 cut(s)	144
Bsp119I	TTCGAA	1 cut(s)	618
Bsp143I	GATC	4 cut(s)	101, 422, 751, 782
BspANI	GGCC	1 cut(s)	694
BspCNI	CTCAG	1 cut(s)	511
BspFNI	CGCG	2 cut(s)	98, 182
BspHI	TCATGA	1 cut(s)	833
BspLI	GGNNCC	1 cut(s)	322
BspPI	GGATC	3 cut(s)	109, 417, 790
BspT104I	TTCGAA	1 cut(s)	618
BspTNI	GGTCTC	1 cut(s)	144
BsrI	ACTGG	2 cut(s)	17, 154
BssECI	CCNNGG	1 cut(s)	96
BssMI	GATC	4 cut(s)	101, 422, 751, 782
Bst6I	CTCTTC	3 cut(s)	407, 531, 717
BstBI	TTCGAA	1 cut(s)	618
BstDEI	CTNAG	1 cut(s)	519
BstDSI	CCRYGG	1 cut(s)	96
BstF5I	GGATG	3 cut(s)	28, 460, 637
BstFNI	CGCG	2 cut(s)	98, 182
BstKTI	GATC	4 cut(s)	104, 425, 754, 785
BstMAI	GTCTC	1 cut(s)	144
BstMBI	GATC	4 cut(s)	101, 422, 751, 782
BstMWI	GCNNNNNNNGC	4 cut(s)	92, 144, 188, 191
BstUI	CGCG	2 cut(s)	98, 182
BstV1I	GCAGC	5 cut(s)	104, 175, 178, 416, 419
BstV2I	GAAGAC	1 cut(s)	124
BstX2I	RGATCY	2 cut(s)	422, 751
BstYI	RGATCY	2 cut(s)	422, 751
BsuRI	GGCC	1 cut(s)	694
BtgI	CCRYGG	1 cut(s)	96
BtsCI	GGATG	3 cut(s)	28, 460, 637
BtsIMutI	CAGTG	1 cut(s)	24
CciI	TCATGA	1 cut(s)	833
Cfr42I	CCGCGG	1 cut(s)	99
CseI	GACGC	1 cut(s)	51
Csp6I	GTAC	1 cut(s)	157
CspCI	CAANNNNNGTGG	2 cut(s)	583, 618
CviAII	CATG	2 cut(s)	710, 834
CviJI	RGCY	5 cut(s)	74, 95, 664, 694, 817
CviKI_1	RGCY	5 cut(s)	74, 95, 664, 694, 817
CviQI	GTAC	1 cut(s)	157
DdeI	CTNAG	1 cut(s)	519
DpnI	GATC	4 cut(s)	103, 424, 753, 784
DpnII	GATC	4 cut(s)	101, 422, 751, 782
Eam1104I	CTCTTC	3 cut(s)	407, 531, 717
EarI	CTCTTC	3 cut(s)	407, 531, 717
EciI	GGCGGA	2 cut(s)	20, 162
Eco31I	GGTCTC	1 cut(s)	144
Eco57I	CTGAAG	1 cut(s)	54
EcoRI	GAATTC	1 cut(s)	614
FaeI	CATG	2 cut(s)	713, 837
FatI	CATG	2 cut(s)	709, 833
FauI	CCCGC	2 cut(s)	91, 369
FokI	GGATG	3 cut(s)	35, 467, 644
FspBI	CTAG	1 cut(s)	326
HaeIII	GGCC	1 cut(s)	694
HgaI	GACGC	1 cut(s)	51
Hin1II	CATG	2 cut(s)	713, 837
HincII	GTYRAC	2 cut(s)	66, 741
HindII	GTYRAC	2 cut(s)	66, 741
HindIII	AAGCTT	1 cut(s)	815
HinfI	GANTC	7 cut(s)	200, 277, 353, 515, 523, 539, 620
HphI	GGTGA	3 cut(s)	167, 458, 664
Hpy166II	GTNNAC	2 cut(s)	66, 741
Hpy188I	TCNGA	2 cut(s)	520, 528
Hpy188III	TCNNGA	1 cut(s)	834
Hpy8I	GTNNAC	2 cut(s)	66, 741
Hpy99I	CGWCG	5 cut(s)	85, 235, 238, 241, 274
HpyAV	CCTTC	4 cut(s)	335, 479, 573, 641
HpyCH4V	TGCA	2 cut(s)	13, 92
HpyF10VI	GCNNNNNNNGC	4 cut(s)	92, 144, 188, 191
HpyF3I	CTNAG	1 cut(s)	519
Hsp92II	CATG	2 cut(s)	713, 837
KspI	CCGCGG	1 cut(s)	99
Kzo9I	GATC	4 cut(s)	101, 422, 751, 782
LpnPI	CCDG	5 cut(s)	30, 72, 167, 173, 288
Lsp1109I	GCAGC	5 cut(s)	104, 175, 178, 416, 419
LweI	GCATC	1 cut(s)	178
MaeI	CTAG	1 cut(s)	326
MaeIII	GTNAC	2 cut(s)	49, 590
MalI	GATC	4 cut(s)	103, 424, 753, 784
MboI	GATC	4 cut(s)	101, 422, 751, 782
MfeI	CAATTG	1 cut(s)	427
MflI	RGATCY	2 cut(s)	422, 751
MluCI	AATT	6 cut(s)	8, 292, 427, 462, 479, 614
MlyI	GAGTC	3 cut(s)	271, 532, 548
MmeI	TCCRAC	1 cut(s)	760
MnlI	CCTC	9 cut(s)	204, 267, 464, 629, 632, 706, 718, 780, 783
MseI	TTAA	3 cut(s)	381, 756, 771
MspA1I	CMGCKG	1 cut(s)	98
MunI	CAATTG	1 cut(s)	427
MvnI	CGCG	2 cut(s)	98, 182
MwoI	GCNNNNNNNGC	4 cut(s)	92, 144, 188, 191
NdeII	GATC	4 cut(s)	101, 422, 751, 782
NlaIII	CATG	2 cut(s)	713, 837
NlaIV	GGNNCC	1 cut(s)	322
NspV	TTCGAA	1 cut(s)	618
PagI	TCATGA	1 cut(s)	833
PcsI	WCGNNNNNNNCGW	1 cut(s)	266
PfeI	GAWTC	4 cut(s)	200, 353, 515, 620
PflMI	CCANNNNNTGG	1 cut(s)	23
PleI	GAGTC	3 cut(s)	271, 531, 547
PpsI	GAGTC	3 cut(s)	271, 531, 547
PshBI	ATTAAT	1 cut(s)	771
PspN4I	GGNNCC	1 cut(s)	322
PsuI	RGATCY	2 cut(s)	422, 751
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
SacII	CCGCGG	1 cut(s)	99
SaqAI	TTAA	3 cut(s)	381, 756, 771
Sau3AI	GATC	4 cut(s)	101, 422, 751, 782
SchI	GAGTC	3 cut(s)	271, 532, 548
SetI	ASST	5 cut(s)	490, 584, 717, 729, 819
SfaNI	GCATC	1 cut(s)	178
Sfr303I	CCGCGG	1 cut(s)	99
SfuI	TTCGAA	1 cut(s)	618
SgrBI	CCGCGG	1 cut(s)	99
Sse9I	AATT	6 cut(s)	8, 292, 427, 462, 479, 614
SspMI	CTAG	1 cut(s)	326
TaqI	TCGA	8 cut(s)	104, 218, 272, 280, 437, 618, 623, 785
TasI	AATT	6 cut(s)	8, 292, 427, 462, 479, 614
TauI	GCSGC	6 cut(s)	45, 98, 185, 188, 191, 194
TfiI	GAWTC	4 cut(s)	200, 353, 515, 620
Tru1I	TTAA	3 cut(s)	381, 756, 771
Tru9I	TTAA	3 cut(s)	381, 756, 771
TscAI	CASTG	1 cut(s)	24
TseI	GCWGC	5 cut(s)	92, 163, 166, 404, 407
TspDTI	ATGAA	2 cut(s)	348, 735
TspRI	CASTG	1 cut(s)	24
Van91I	CCANNNNNTGG	1 cut(s)	23
VspI	ATTAAT	1 cut(s)	771
XapI	RAATTY	2 cut(s)	292, 614
XspI	CTAG	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.