Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0003205

Physical Location & Seq

Genomic Coordinates Forward (+)

31301350 .. 31305624

Gene Structure 4275 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G022550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGATGGGATTGGGAATCTATCCCTGGCTCTACCTCAGAAGGATGATCGCCTGATCATTTTGCCACAAAAGAATAAGGTAGGTCGCCCCAAGGGATCAAAGAATAAGATTAAAGGGTCTGCGGAGAAGGATGCTCGAGTCAAAGTGAAAGGACGGAAGCGTTTTCTGAAGCTTCTTGAGGAGGAGGAGGAGGGGACTGATTCCTCTCCGGGGAAGGAAAAAACTACTCAAGCTGATGAGGTGATGACTACAGTTGTGGGGAAAGCTTCAAGTGAAGAGGTGATTACTTCAATTGCTGTGATGGGGAAGCCTGAAGGTGAGCAGGTTTTGATTGAGGAGATGGAGGTGAATACGACAATTAGAGAGGGCCAACTTCCAATTGGGGAGATTGATAACCAACCTCGTCAACAAGACGATTTGACTCAGATAGATGATCGGAACCAGAATGGCGAGGGGAGCTTCAAGTTCGAAAGCATGAAGATCAAATCGAAGCGAGCAATGACAATGAAGAGAGTGCGATCGAATTGGATTTCGAATTTGAAAATTGACGAGGGAGGCGATAGCCGAGAGGACAGGGAGGGATGGATGAGTGTAGTTCCTGATAAGGATAGTCCAGTGTGGGATGAGAGTCACCCCATCGACCCAATTAATTTTGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAM_1 SAM_2

Protein Analysis

219

Amino Acids

24.49

Weight (kDa)

5.26

Isoelectric Point (pI)

43.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48800 AT5G23680
fragaria_vesca	FvH4_4g22930 FvH4_5g09120 FvH4_5g09120
malus_domestica	MD04G1000300.v1.1 MD06G1133400.v1.1 MD13G1128000.v1.1 MD13G1128300.v1.1 MD14G1149800.v1.1 MD16G1128400.v1.1
prunus_persica	Prupe.5G144600_v2.0.a1 Prupe.5G144600_v2.0.a1
pyrus_communis	pycom13g11100 pycom14g12450 pycom16g10890
rosa_chinensis	RchiOBHm_Chr4g0429181 RchiOBHm_Chr7g0189071
rosa_laevigata	RLG00000004635 RLG00000007089
rosa_multiflora	Rmu_co7993242.1_g000001 Rmu_co8485617.1_g000001 Rmu_sc0004290.1_g000008 Rmu_sc0004872.1_g000001
rosa_rugosa	Rorug04G0233700 Rorug06G0496000
rosa_samantha	Rh4AG289600 Rh4BG295600 Rh4CG311100 Rh4DG292500 Rh7AG100400 Rh7BG102900 Rh7CG104400 Rh7DG102400
rosa_wichuraiana	Rw4G025090 Rw5G022550 Rw7G008680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	313
AciI	CCGC	1 cut(s)	122
AclWI	GGATC	1 cut(s)	103
AcsI	RAATTY	1 cut(s)	535
AcuI	CTGAAG	2 cut(s)	188, 333
AfiI	CCNNNNNNNGG	1 cut(s)	210
AgsI	TTSAA	4 cut(s)	270, 291, 463, 541
AjnI	CCWGG	1 cut(s)	24
AluBI	AGCT	4 cut(s)	172, 233, 266, 459
AluI	AGCT	4 cut(s)	172, 233, 266, 459
AlwI	GGATC	1 cut(s)	103
Ama87I	CYCGRG	1 cut(s)	135
AoxI	GGCC	1 cut(s)	367
ApoI	RAATTY	1 cut(s)	535
AseI	ATTAAT	1 cut(s)	648
AspS9I	GGNCC	1 cut(s)	367
AsuC2I	CCSGG	1 cut(s)	210
AsuHPI	GGTGA	5 cut(s)	253, 292, 329, 358, 623
AsuII	TTCGAA	2 cut(s)	468, 533
AvaI	CYCGRG	1 cut(s)	135
BccI	CCATC	4 cut(s)	295, 334, 576, 644
BciT130I	CCWGG	1 cut(s)	26
BclI	TGATCA	1 cut(s)	54
BcnI	CCSGG	1 cut(s)	210
BfmI	CTRYAG	1 cut(s)	249
BfuAI	ACCTGC	1 cut(s)	313
Bme1390I	CCNGG	2 cut(s)	26, 210
BmeT110I	CYCGRG	1 cut(s)	135
BmgT120I	GGNCC	1 cut(s)	367
BmiI	GGNNCC	1 cut(s)	440
BmrFI	CCNGG	2 cut(s)	26, 210
BmsI	GCATC	1 cut(s)	121
Bpu14I	TTCGAA	2 cut(s)	468, 533
BpuEI	CTTGAG	2 cut(s)	197, 213
BpuMI	CCSGG	1 cut(s)	210
BsaJI	CCNNGG	3 cut(s)	24, 90, 209
Bsc4I	CCNNNNNNNGG	1 cut(s)	210
Bse1I	ACTGG	1 cut(s)	614
Bse3DI	GCAATG	1 cut(s)	504
BseBI	CCWGG	1 cut(s)	26
BseDI	CCNNGG	3 cut(s)	24, 90, 209
BseGI	GGATG	6 cut(s)	10, 49, 136, 587, 591, 628
BseLI	CCNNNNNNNGG	1 cut(s)	210
BseMI	GCAATG	1 cut(s)	504
BseMII	CTCAG	2 cut(s)	50, 437
BseNI	ACTGG	1 cut(s)	614
BseRI	GAGGAG	5 cut(s)	194, 197, 200, 203, 350
Bsh1285I	CGRYCG	1 cut(s)	521
BshFI	GGCC	1 cut(s)	369
BsiEI	CGRYCG	1 cut(s)	521
BsiHKCI	CYCGRG	1 cut(s)	135
BsiSI	CCGG	1 cut(s)	209
BslFI	GGGAC	1 cut(s)	208
BslI	CCNNNNNNNGG	1 cut(s)	210
BsmFI	GGGAC	1 cut(s)	208
BsnI	GGCC	1 cut(s)	369
BsoBI	CYCGRG	1 cut(s)	135
Bsp119I	TTCGAA	2 cut(s)	468, 533
Bsp143I	GATC	6 cut(s)	46, 54, 95, 433, 480, 518
BspACI	CCGC	1 cut(s)	122
BspANI	GGCC	1 cut(s)	369
BspCNI	CTCAG	2 cut(s)	49, 436
BspLI	GGNNCC	1 cut(s)	440
BspMI	ACCTGC	1 cut(s)	313
BspPI	GGATC	1 cut(s)	103
BspT104I	TTCGAA	2 cut(s)	468, 533
BsrDI	GCAATG	1 cut(s)	504
BsrI	ACTGG	1 cut(s)	614
BssECI	CCNNGG	3 cut(s)	24, 90, 209
BssMI	GATC	6 cut(s)	46, 54, 95, 433, 480, 518
BssT1I	CCWWGG	1 cut(s)	90
Bst2UI	CCWGG	1 cut(s)	26
Bst4CI	ACNGT	1 cut(s)	253
Bst6I	CTCTTC	2 cut(s)	270, 503
BstBI	TTCGAA	2 cut(s)	468, 533
BstC8I	GCNNGC	1 cut(s)	495
BstDEI	CTNAG	2 cut(s)	36, 423
BstF5I	GGATG	6 cut(s)	10, 49, 136, 587, 591, 628
BstKTI	GATC	6 cut(s)	49, 57, 98, 436, 483, 521
BstMBI	GATC	6 cut(s)	46, 54, 95, 433, 480, 518
BstMCI	CGRYCG	1 cut(s)	521
BstMWI	GCNNNNNNNGC	1 cut(s)	456
BstNI	CCWGG	1 cut(s)	26
BstSCI	CCNGG	2 cut(s)	24, 208
BstSFI	CTRYAG	1 cut(s)	249
BsuRI	GGCC	1 cut(s)	369
BtsCI	GGATG	6 cut(s)	10, 49, 136, 587, 591, 628
BtsIMutI	CAGTG	1 cut(s)	621
BveI	ACCTGC	1 cut(s)	313
Cac8I	GCNNGC	1 cut(s)	495
Cfr13I	GGNCC	1 cut(s)	367
CviAII	CATG	1 cut(s)	475
CviJI	RGCY	8 cut(s)	29, 172, 233, 266, 310, 369, 459, 564
CviKI_1	RGCY	8 cut(s)	29, 172, 233, 266, 310, 369, 459, 564
DdeI	CTNAG	2 cut(s)	36, 423
DpnI	GATC	6 cut(s)	48, 56, 97, 435, 482, 520
DpnII	GATC	6 cut(s)	46, 54, 95, 433, 480, 518
Eam1104I	CTCTTC	2 cut(s)	270, 503
EarI	CTCTTC	2 cut(s)	270, 503
Eco130I	CCWWGG	1 cut(s)	90
Eco57I	CTGAAG	2 cut(s)	188, 333
Eco88I	CYCGRG	1 cut(s)	135
EcoRII	CCWGG	1 cut(s)	24
EcoT14I	CCWWGG	1 cut(s)	90
ErhI	CCWWGG	1 cut(s)	90
FaeI	CATG	1 cut(s)	478
FaiI	YATR	1 cut(s)	476
FaqI	GGGAC	1 cut(s)	208
FatI	CATG	1 cut(s)	474
FbaI	TGATCA	1 cut(s)	54
FokI	GGATG	6 cut(s)	17, 56, 143, 594, 598, 635
HaeIII	GGCC	1 cut(s)	369
HapII	CCGG	1 cut(s)	209
Hin1II	CATG	1 cut(s)	478
HincII	GTYRAC	1 cut(s)	407
HindII	GTYRAC	1 cut(s)	407
HindIII	AAGCTT	2 cut(s)	170, 264
HinfI	GANTC	5 cut(s)	16, 138, 200, 421, 628
HpaII	CCGG	1 cut(s)	209
HphI	GGTGA	5 cut(s)	253, 292, 329, 358, 623
Hpy166II	GTNNAC	1 cut(s)	407
Hpy188I	TCNGA	4 cut(s)	39, 168, 426, 438
Hpy188III	TCNNGA	2 cut(s)	176, 599
Hpy8I	GTNNAC	1 cut(s)	407
HpyAV	CCTTC	4 cut(s)	34, 121, 208, 308
HpyCH4III	ACNGT	1 cut(s)	253
HpyF10VI	GCNNNNNNNGC	1 cut(s)	456
HpyF3I	CTNAG	2 cut(s)	36, 423
Hsp92II	CATG	1 cut(s)	478
Ksp22I	TGATCA	1 cut(s)	54
Kzo9I	GATC	6 cut(s)	46, 54, 95, 433, 480, 518
LmnI	GCTCC	1 cut(s)	456
LweI	GCATC	1 cut(s)	121
MaeIII	GTNAC	1 cut(s)	629
MalI	GATC	6 cut(s)	48, 56, 97, 435, 482, 520
MboI	GATC	6 cut(s)	46, 54, 95, 433, 480, 518
MboII	GAAGA	3 cut(s)	287, 490, 520
MfeI	CAATTG	2 cut(s)	291, 378
MluCI	AATT	8 cut(s)	291, 357, 378, 523, 535, 543, 645, 649
MlyI	GAGTC	3 cut(s)	147, 415, 637
MseI	TTAA	2 cut(s)	111, 648
MspI	CCGG	1 cut(s)	209
MspR9I	CCNGG	2 cut(s)	26, 210
MunI	CAATTG	2 cut(s)	291, 378
MvaI	CCWGG	1 cut(s)	26
MwoI	GCNNNNNNNGC	1 cut(s)	456
NciI	CCSGG	1 cut(s)	210
NdeII	GATC	6 cut(s)	46, 54, 95, 433, 480, 518
NlaIII	CATG	1 cut(s)	478
NlaIV	GGNNCC	1 cut(s)	440
NmeAIII	GCCGAG	1 cut(s)	590
NmuCI	GTSAC	1 cut(s)	629
NspV	TTCGAA	2 cut(s)	468, 533
PaeR7I	CTCGAG	1 cut(s)	135
PcsI	WCGNNNNNNNCGW	1 cut(s)	555
PfeI	GAWTC	2 cut(s)	16, 200
Ple19I	CGATCG	1 cut(s)	521
PleI	GAGTC	3 cut(s)	146, 415, 636
PpsI	GAGTC	3 cut(s)	146, 415, 636
PshBI	ATTAAT	1 cut(s)	648
Psp6I	CCWGG	1 cut(s)	24
PspGI	CCWGG	1 cut(s)	24
PspN4I	GGNNCC	1 cut(s)	440
PspPI	GGNCC	1 cut(s)	367
PspXI	VCTCGAGB	1 cut(s)	135
PvuI	CGATCG	1 cut(s)	521
SaqAI	TTAA	2 cut(s)	111, 648
Sau3AI	GATC	6 cut(s)	46, 54, 95, 433, 480, 518
Sau96I	GGNCC	1 cut(s)	367
SchI	GAGTC	3 cut(s)	147, 415, 637
ScrFI	CCNGG	2 cut(s)	26, 210
SfaNI	GCATC	1 cut(s)	121
SfcI	CTRYAG	1 cut(s)	249
Sfr274I	CTCGAG	1 cut(s)	135
SfuI	TTCGAA	2 cut(s)	468, 533
SlaI	CTCGAG	1 cut(s)	135
SmlI	CTYRAG	3 cut(s)	135, 176, 228
SmoI	CTYRAG	3 cut(s)	135, 176, 228
Sse9I	AATT	8 cut(s)	291, 357, 378, 523, 535, 543, 645, 649
SsiI	CCGC	1 cut(s)	122
StyD4I	CCNGG	2 cut(s)	24, 208
StyI	CCWWGG	1 cut(s)	90
TaaI	ACNGT	1 cut(s)	253
TaqI	TCGA	6 cut(s)	136, 468, 488, 521, 533, 639
TasI	AATT	8 cut(s)	291, 357, 378, 523, 535, 543, 645, 649
TfiI	GAWTC	2 cut(s)	16, 200
Tru1I	TTAA	2 cut(s)	111, 648
Tru9I	TTAA	2 cut(s)	111, 648
TscAI	CASTG	1 cut(s)	621
TseFI	GTSAC	1 cut(s)	629
Tsp45I	GTSAC	1 cut(s)	629
TspDTI	ATGAA	2 cut(s)	491, 521
TspGWI	ACGGA	1 cut(s)	169
TspRI	CASTG	1 cut(s)	621
VspI	ATTAAT	1 cut(s)	648
XapI	RAATTY	1 cut(s)	535
XcmI	CCANNNNNNNNNTGG	1 cut(s)	377
XhoI	CTCGAG	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.