Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0003205

Physical Location & Seq

Genomic Coordinates Reverse (-)

5260355 .. 5263091

Gene Structure 2737 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g09120.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGCGGAGATACAGCCACCGGAGATCAACGGCGGGCAATTCACGACGGGTTCGACGGAGGCTGCAGCGGCGGCGGCGGCGGTGGGGGCGAAGCGGCAGCGGAGGCCCAGCGTCCGATTGGGGGAGATCGGAGGAGACCAGCCCTACGATTCGAACCCGCGGCGGGCGGCCAAGCAGTGGAGGCCGCCGCCGATGGAGCAGCACCAACAGCGGAAGGAGTCGAGTAAGTCGTCAAAGACTCGGCCTTTAGTGAATTTGAGCTCCGGCGGCGAGTTTGATGAAACCCTAGAAAGGGAGGAGAGAGAGGGCAACCTCGATAGCGTCGCCATTGGGAGCTGGAAGGTGAAAGAGACCAAGAAGAGGGCTTCGACTGGGACCAAGAGGGTCAGATCCAATTGGGTCCCGGCCAAGATTGACGAGGGCGGCGGCGGCGAGGATGGGGAAGATGGGTATCGGGAATTTGGGCCGGAGGAGTCGGAAAGCCCAATGAAAGAGCAGAGCCCAATTCATTCCTCGGAGAATTTGGCTTACCATGGGAGTAGGAGAGCAATTAGGAGTAGGGTTTTGGAGCATGATGGGGTTGAGCTATCGGGGCCGTCGGAGAACAACGATGGCAGGGAGTGGAATGGGAGAGGGACTAGTAATGGGAATGAAGGGAGAGTTGGGTGTGGGGAAGATGGGGTTAGGGTTTGGCTCAATGGGTTAGGGTTGAGTAGGTATGCCCCAGTGTTCGAAATTCATGAGGTGGATGATGAAGTATTGCCAATGCTGACTTTGGAGGACCTCAAGGACATGGGGATAAATGCGGTTGGGTCCAGGAGGAAAATGTACTGTGCTATTCAGAAGCTTGGGAAGGGGTTTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0007275 GO:0007368 GO:0007389 GO:0007507 GO:0008150 GO:0009799 GO:0009855 GO:0009966 GO:0009968 GO:0010646 GO:0010648 GO:0023051 GO:0023057 GO:0030111 GO:0030178 GO:0032501 GO:0032502 GO:0048513 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0060828 GO:0065007 GO:0072359 GO:0090090 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAM_1 SAM_2

Protein Analysis

289

Amino Acids

31.56

Weight (kDa)

5.89

Isoelectric Point (pI)

58.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAM_1	PF00536	227 - 283	2.9e-13	SAM domain (Sterile alpha motif)
SAM_2	PF07647	231 - 283	1.2e-11	SAM domain (Sterile alpha motif)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48800 AT5G23680
fragaria_vesca	FvH4_4g22930 FvH4_5g09120 FvH4_5g09120
malus_domestica	MD04G1000300.v1.1 MD06G1133400.v1.1 MD13G1128000.v1.1 MD13G1128300.v1.1 MD14G1149800.v1.1 MD16G1128400.v1.1
prunus_persica	Prupe.5G144600_v2.0.a1 Prupe.5G144600_v2.0.a1
pyrus_communis	pycom13g11100 pycom14g12450 pycom16g10890
rosa_chinensis	RchiOBHm_Chr4g0429181 RchiOBHm_Chr7g0189071
rosa_laevigata	RLG00000004635 RLG00000007089
rosa_multiflora	Rmu_co7993242.1_g000001 Rmu_co8485617.1_g000001 Rmu_sc0004290.1_g000008 Rmu_sc0004872.1_g000001
rosa_rugosa	Rorug04G0233700 Rorug06G0496000
rosa_samantha	Rh4AG289600 Rh4BG295600 Rh4CG311100 Rh4DG292500 Rh7AG100400 Rh7BG102900 Rh7CG104400 Rh7DG102400
rosa_wichuraiana	Rw4G025090 Rw5G022550 Rw7G008680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	177
AccII	CGCG	1 cut(s)	160
AclWI	GGATC	1 cut(s)	384
AcoI	YGGCCR	2 cut(s)	168, 405
AcsI	RAATTY	4 cut(s)	253, 458, 520, 735
AfaI	GTAC	1 cut(s)	830
AfiI	CCNNNNNNNGG	6 cut(s)	121, 163, 177, 291, 292, 360
AhlI	ACTAGT	1 cut(s)	638
AjnI	CCWGG	1 cut(s)	815
AjuI	GAANNNNNNNTTGG	2 cut(s)	645, 677
AluBI	AGCT	4 cut(s)	261, 336, 586, 847
AluI	AGCT	4 cut(s)	261, 336, 586, 847
Alw21I	GWGCWC	1 cut(s)	263
Alw26I	GTCTC	2 cut(s)	129, 344
AlwI	GGATC	1 cut(s)	384
AoxI	GGCC	7 cut(s)	104, 168, 182, 242, 405, 464, 593
ApeKI	GCWGC	4 cut(s)	62, 65, 97, 199
ApoI	RAATTY	4 cut(s)	253, 458, 520, 735
AspS9I	GGNCC	7 cut(s)	105, 375, 400, 464, 593, 781, 813
AsuC2I	CCSGG	1 cut(s)	404
AsuHPI	GGTGA	1 cut(s)	355
AsuII	TTCGAA	2 cut(s)	152, 732
AvaII	GGWCC	4 cut(s)	375, 400, 781, 813
BanII	GRGCYC	2 cut(s)	263, 503
Bbv12I	GWGCWC	1 cut(s)	263
BbvI	GCAGC	4 cut(s)	49, 77, 109, 211
BccI	CCATC	6 cut(s)	187, 431, 440, 569, 605, 671
BceAI	ACGGC	2 cut(s)	46, 580
BciT130I	CCWGG	1 cut(s)	817
BcnI	CCSGG	1 cut(s)	404
BcoDI	GTCTC	2 cut(s)	129, 344
BcuI	ACTAGT	1 cut(s)	638
BfaI	CTAG	2 cut(s)	287, 639
BfmI	CTRYAG	1 cut(s)	63
Bme1390I	CCNGG	2 cut(s)	404, 817
Bme18I	GGWCC	4 cut(s)	375, 400, 781, 813
BmgT120I	GGNCC	7 cut(s)	105, 375, 400, 464, 593, 781, 813
BmiI	GGNNCC	5 cut(s)	376, 401, 402, 594, 814
BmrFI	CCNGG	2 cut(s)	404, 817
BmrI	ACTGGG	2 cut(s)	381, 719
BmuI	ACTGGG	2 cut(s)	381, 719
Bpu14I	TTCGAA	2 cut(s)	152, 732
BpuEI	CTTGAG	1 cut(s)	770
BpuMI	CCSGG	1 cut(s)	404
BsaBI	GATNNNNATC	1 cut(s)	450
BsaI	GGTCTC	2 cut(s)	129, 344
BsaJI	CCNNGG	3 cut(s)	158, 513, 532
BsaWI	WCCGGW	1 cut(s)	19
Bsc4I	CCNNNNNNNGG	6 cut(s)	121, 163, 177, 291, 292, 360
Bse1I	ACTGG	2 cut(s)	376, 725
Bse8I	GATNNNNATC	1 cut(s)	450
BseBI	CCWGG	1 cut(s)	817
BseDI	CCNNGG	3 cut(s)	158, 513, 532
BseGI	GGATG	2 cut(s)	442, 754
BseJI	GATNNNNATC	1 cut(s)	450
BseLI	CCNNNNNNNGG	6 cut(s)	121, 163, 177, 291, 292, 360
BseNI	ACTGG	2 cut(s)	376, 725
BseRI	GAGGAG	3 cut(s)	147, 311, 485
BseXI	GCAGC	4 cut(s)	49, 77, 109, 211
BseYI	CCCAGC	1 cut(s)	107
Bsh1236I	CGCG	1 cut(s)	160
BshFI	GGCC	7 cut(s)	106, 170, 184, 244, 407, 466, 595
BsiHKAI	GWGCWC	1 cut(s)	263
BsiSI	CCGG	4 cut(s)	20, 264, 404, 467
BslFI	GGGAC	3 cut(s)	386, 388, 649
BslI	CCNNNNNNNGG	6 cut(s)	121, 163, 177, 291, 292, 360
BsmAI	GTCTC	2 cut(s)	129, 344
BsmFI	GGGAC	3 cut(s)	386, 388, 649
BsnI	GGCC	7 cut(s)	106, 170, 184, 244, 407, 466, 595
Bso31I	GGTCTC	2 cut(s)	129, 344
Bsp119I	TTCGAA	2 cut(s)	152, 732
Bsp1286I	GDGCHC	2 cut(s)	263, 503
Bsp143I	GATC	3 cut(s)	24, 126, 389
Bsp19I	CCATGG	1 cut(s)	532
BspANI	GGCC	7 cut(s)	106, 170, 184, 244, 407, 466, 595
BspFNI	CGCG	1 cut(s)	160
BspHI	TCATGA	1 cut(s)	739
BspLI	GGNNCC	5 cut(s)	376, 401, 402, 594, 814
BspMAI	CTGCAG	1 cut(s)	67
BspPI	GGATC	1 cut(s)	384
BspT104I	TTCGAA	2 cut(s)	152, 732
BspTNI	GGTCTC	2 cut(s)	129, 344
BsrI	ACTGG	2 cut(s)	376, 725
BssECI	CCNNGG	3 cut(s)	158, 513, 532
BssMI	GATC	3 cut(s)	24, 126, 389
BssT1I	CCWWGG	1 cut(s)	532
Bst2UI	CCWGG	1 cut(s)	817
Bst4CI	ACNGT	1 cut(s)	833
Bst6I	CTCTTC	1 cut(s)	353
BstBI	TTCGAA	2 cut(s)	152, 732
BstC8I	GCNNGC	2 cut(s)	35, 165
BstDSI	CCRYGG	2 cut(s)	158, 532
BstF5I	GGATG	2 cut(s)	442, 754
BstFNI	CGCG	1 cut(s)	160
BstKTI	GATC	3 cut(s)	27, 129, 392
BstMAI	GTCTC	2 cut(s)	129, 344
BstMBI	GATC	3 cut(s)	24, 126, 389
BstNI	CCWGG	1 cut(s)	817
BstSCI	CCNGG	2 cut(s)	402, 815
BstSFI	CTRYAG	1 cut(s)	63
BstUI	CGCG	1 cut(s)	160
BstV1I	GCAGC	4 cut(s)	49, 77, 109, 211
BstX2I	RGATCY	1 cut(s)	389
BstYI	RGATCY	1 cut(s)	389
BsuRI	GGCC	7 cut(s)	106, 170, 184, 244, 407, 466, 595
BtgI	CCRYGG	2 cut(s)	158, 532
BtsCI	GGATG	2 cut(s)	442, 754
BtsI	GCAGTG	1 cut(s)	182
BtsIMutI	CAGTG	2 cut(s)	182, 732
Cac8I	GCNNGC	2 cut(s)	35, 165
CciI	TCATGA	1 cut(s)	739
Cfr13I	GGNCC	7 cut(s)	105, 375, 400, 464, 593, 781, 813
Cfr42I	CCGCGG	1 cut(s)	161
CseI	GACGC	2 cut(s)	100, 310
Csp6I	GTAC	1 cut(s)	829
CviAII	CATG	4 cut(s)	533, 572, 740, 793
CviQI	GTAC	1 cut(s)	829
DpnI	GATC	3 cut(s)	26, 128, 391
DpnII	GATC	3 cut(s)	24, 126, 389
EaeI	YGGCCR	2 cut(s)	168, 405
Eam1104I	CTCTTC	1 cut(s)	353
EarI	CTCTTC	1 cut(s)	353
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	261
Eco130I	CCWWGG	1 cut(s)	532
Eco24I	GRGCYC	2 cut(s)	263, 503
Eco31I	GGTCTC	2 cut(s)	129, 344
Eco47I	GGWCC	4 cut(s)	375, 400, 781, 813
Eco53kI	GAGCTC	1 cut(s)	261
EcoICRI	GAGCTC	1 cut(s)	261
EcoO109I	RGGNCCY	2 cut(s)	400, 781
EcoRII	CCWGG	1 cut(s)	815
EcoT14I	CCWWGG	1 cut(s)	532
EcoT38I	GRGCYC	2 cut(s)	263, 503
ErhI	CCWWGG	1 cut(s)	532
FaeI	CATG	4 cut(s)	536, 575, 743, 796
FaiI	YATR	5 cut(s)	534, 573, 720, 741, 794
FaqI	GGGAC	3 cut(s)	386, 388, 649
FatI	CATG	4 cut(s)	532, 571, 739, 792
FauI	CCCGC	3 cut(s)	26, 156, 165
FokI	GGATG	2 cut(s)	449, 761
FriOI	GRGCYC	2 cut(s)	263, 503
FspBI	CTAG	2 cut(s)	287, 639
GsaI	CCCAGC	1 cut(s)	111
HaeIII	GGCC	7 cut(s)	106, 170, 184, 244, 407, 466, 595
HapII	CCGG	4 cut(s)	20, 264, 404, 467
HgaI	GACGC	2 cut(s)	100, 310
Hin1II	CATG	4 cut(s)	536, 575, 743, 796
HindIII	AAGCTT	1 cut(s)	845
HinfI	GANTC	4 cut(s)	149, 218, 238, 473
HpaII	CCGG	4 cut(s)	20, 264, 404, 467
HphI	GGTGA	1 cut(s)	355
Hpy188I	TCNGA	7 cut(s)	116, 131, 389, 478, 517, 601, 843
Hpy188III	TCNNGA	4 cut(s)	43, 455, 740, 864
Hpy99I	CGWCG	4 cut(s)	49, 58, 326, 601
HpyAV	CCTTC	4 cut(s)	208, 334, 647, 847
HpyCH4III	ACNGT	1 cut(s)	833
HpyCH4V	TGCA	1 cut(s)	65
Hsp92II	CATG	4 cut(s)	536, 575, 743, 796
KflI	GGGWCCC	1 cut(s)	400
KspI	CCGCGG	1 cut(s)	161
Kzo9I	GATC	3 cut(s)	24, 126, 389
LmnI	GCTCC	4 cut(s)	196, 266, 333, 568
Lsp1109I	GCAGC	4 cut(s)	49, 77, 109, 211
MaeI	CTAG	2 cut(s)	287, 639
MalI	GATC	3 cut(s)	26, 128, 391
MboI	GATC	3 cut(s)	24, 126, 389
MboII	GAAGA	3 cut(s)	370, 455, 686
MfeI	CAATTG	1 cut(s)	394
MflI	RGATCY	1 cut(s)	389
MhlI	GDGCHC	2 cut(s)	263, 503
MluCI	AATT	8 cut(s)	38, 253, 394, 458, 504, 520, 549, 735
MlyI	GAGTC	3 cut(s)	227, 232, 482
MmeI	TCCRAC	2 cut(s)	456, 579
MspA1I	CMGCKG	4 cut(s)	68, 100, 160, 211
MspI	CCGG	4 cut(s)	20, 264, 404, 467
MspR9I	CCNGG	2 cut(s)	404, 817
MunI	CAATTG	1 cut(s)	394
MvaI	CCWGG	1 cut(s)	817
MvnI	CGCG	1 cut(s)	160
NciI	CCSGG	1 cut(s)	404
NcoI	CCATGG	1 cut(s)	532
NdeII	GATC	3 cut(s)	24, 126, 389
NlaIII	CATG	4 cut(s)	536, 575, 743, 796
NlaIV	GGNNCC	5 cut(s)	376, 401, 402, 594, 814
NmeAIII	GCCGAG	1 cut(s)	220
NspV	TTCGAA	2 cut(s)	152, 732
PagI	TCATGA	1 cut(s)	739
PcsI	WCGNNNNNNNCGW	2 cut(s)	50, 227
PfeI	GAWTC	1 cut(s)	149
PflMI	CCANNNNNTGG	1 cut(s)	177
PfoI	TCCNGGA	1 cut(s)	815
PleI	GAGTC	3 cut(s)	226, 232, 481
PpsI	GAGTC	3 cut(s)	226, 232, 481
PpuMI	RGGWCCY	2 cut(s)	400, 781
Psp124BI	GAGCTC	1 cut(s)	263
Psp5II	RGGWCCY	2 cut(s)	400, 781
Psp6I	CCWGG	1 cut(s)	815
PspFI	CCCAGC	1 cut(s)	107
PspGI	CCWGG	1 cut(s)	815
PspN4I	GGNNCC	5 cut(s)	376, 401, 402, 594, 814
PspPI	GGNCC	7 cut(s)	105, 375, 400, 464, 593, 781, 813
PspPPI	RGGWCCY	2 cut(s)	400, 781
PstI	CTGCAG	1 cut(s)	67
PsuI	RGATCY	1 cut(s)	389
RsaI	GTAC	1 cut(s)	830
RsaNI	GTAC	1 cut(s)	829
SacI	GAGCTC	1 cut(s)	263
SacII	CCGCGG	1 cut(s)	161
Sau3AI	GATC	3 cut(s)	24, 126, 389
Sau96I	GGNCC	7 cut(s)	105, 375, 400, 464, 593, 781, 813
SchI	GAGTC	3 cut(s)	227, 232, 482
ScrFI	CCNGG	2 cut(s)	404, 817
SduI	GDGCHC	2 cut(s)	263, 503
SetI	ASST	9 cut(s)	263, 315, 338, 345, 588, 719, 747, 786, 849
SfcI	CTRYAG	1 cut(s)	63
Sfr303I	CCGCGG	1 cut(s)	161
SfuI	TTCGAA	2 cut(s)	152, 732
SgrBI	CCGCGG	1 cut(s)	161
SinI	GGWCC	4 cut(s)	375, 400, 781, 813
SmlI	CTYRAG	1 cut(s)	785
SmoI	CTYRAG	1 cut(s)	785
SpeI	ACTAGT	1 cut(s)	638
Sse9I	AATT	8 cut(s)	38, 253, 394, 458, 504, 520, 549, 735
SspMI	CTAG	2 cut(s)	287, 639
SstI	GAGCTC	1 cut(s)	263
StyD4I	CCNGG	2 cut(s)	402, 815
StyI	CCWWGG	1 cut(s)	532
TaaI	ACNGT	1 cut(s)	833
TaqI	TCGA	6 cut(s)	53, 152, 221, 315, 368, 732
TasI	AATT	8 cut(s)	38, 253, 394, 458, 504, 520, 549, 735
TatI	WGTACW	1 cut(s)	828
TfiI	GAWTC	1 cut(s)	149
TscAI	CASTG	2 cut(s)	182, 732
TseI	GCWGC	4 cut(s)	62, 65, 97, 199
TspDTI	ATGAA	6 cut(s)	294, 497, 503, 666, 728, 768
TspGWI	ACGGA	1 cut(s)	71
TspRI	CASTG	2 cut(s)	182, 732
Van91I	CCANNNNNTGG	1 cut(s)	177
VpaK11BI	GGWCC	4 cut(s)	375, 400, 781, 813
XapI	RAATTY	4 cut(s)	253, 458, 520, 735
XcmI	CCANNNNNNNNNTGG	1 cut(s)	115
XspI	CTAG	2 cut(s)	287, 639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.