Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0003205

Physical Location & Seq

Genomic Coordinates Reverse (-)

9405124 .. 9406297

Gene Structure 1174 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1128400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGCAGCTGAGCTACAGCCACTGGAAGCTCCAATCACCGCCGGCCCGACAATTCTAACCACCACAACGACAGAACCGATAAATACAGCAACAACCTTAACTGCCACAACGGCAATAGCAACCACAACGGCCGTACACACCGCGGAGAACCACGGCCCCCAATTGGGCCCCAAACGGCAGCGCCGCCCCAGCGTCCGATTAGGCGAAATCGGCGACCAGCCTGCCGCCACTGCCTCATTTGAATCACATATGCGACGAGCCAGGCCCAGCTGGAGGCTCCCCAAGGACTCCAAATCGGTCAAGGCCCGGTCGATCACCAACCTCGTCAACGGCAACGAGTCCAACGAAACGACGCCGCACGATGAGAGGAACCAAAACGGAGACGGAGGGTTCGAGTTCGGGGGCCGGAGATTCAAGGCGAAGCGAGCCACGGGGACCAAGAGGGTCCGATCGAATTGGGCTTCCAATTCGAAGCTCGACGACGGCGGCGACAGCAGAGAGGAGGGAGGAGAGTGGTTCAGCGTGGACCCCGATCAGGATAGTCCGGTGAGGGACAGCAGCCCGCTGAACTCGGGGGAAGACACGGGGCAGGATATGTGGGATGGGCAGAGGAGGATGGCGGGAAACTGGGCTAGGGCATCGGAGAGCAGGGAGAACGACGCTGTTGAAGCGGATAACATGCCGGAATCGAATTGGAGTGGAGTGAGGTCGTGGCTGATAGAATTGGGGCTGAGCCGGTACACGCCGGTGTTCGAGATACATGAGGTGGACGACGAGGTGCTGCCGATGCTGACATTGGAGGATCTTAAGGATATGGGAATCAACGCCGTTGGTTCGCGGCGGAAAATGTATGCCGCCATTCAGAAGCTCCGCAAGGGGTTCTCGCTGTGTACGATACACGTTCATTCCCCGACCCTCGCAAAGCGGAGACCCTTGTTGACTTGGTGTCACCCTTTTTTAATTGTAGTTTTCCCATCAATGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAM_1 SAM_2

Protein Analysis

329

Amino Acids

36.28

Weight (kDa)

6.47

Isoelectric Point (pI)

57.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAM_1	PF00536	234 - 291	4.2e-13	SAM domain (Sterile alpha motif)
SAM_2	PF07647	235 - 291	3.7e-13	SAM domain (Sterile alpha motif)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48800 AT5G23680
fragaria_vesca	FvH4_4g22930 FvH4_5g09120 FvH4_5g09120
malus_domestica	MD04G1000300.v1.1 MD06G1133400.v1.1 MD13G1128000.v1.1 MD13G1128300.v1.1 MD14G1149800.v1.1 MD16G1128400.v1.1
prunus_persica	Prupe.5G144600_v2.0.a1 Prupe.5G144600_v2.0.a1
pyrus_communis	pycom13g11100 pycom14g12450 pycom16g10890
rosa_chinensis	RchiOBHm_Chr4g0429181 RchiOBHm_Chr7g0189071
rosa_laevigata	RLG00000004635 RLG00000007089
rosa_multiflora	Rmu_co7993242.1_g000001 Rmu_co8485617.1_g000001 Rmu_sc0004290.1_g000008 Rmu_sc0004872.1_g000001
rosa_rugosa	Rorug04G0233700 Rorug06G0496000
rosa_samantha	Rh4AG289600 Rh4BG295600 Rh4CG311100 Rh4DG292500 Rh7AG100400 Rh7BG102900 Rh7CG104400 Rh7DG102400
rosa_wichuraiana	Rw4G025090 Rw5G022550 Rw7G008680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	143, 838
AclWI	GGATC	1 cut(s)	810
AcoI	YGGCCR	1 cut(s)	129
AcyI	GRCGYC	1 cut(s)	353
AfaI	GTAC	3 cut(s)	135, 740, 892
AfiI	CCNNNNNNNGG	4 cut(s)	163, 164, 273, 535
AflII	CTTAAG	1 cut(s)	806
AflIII	ACRYGT	1 cut(s)	898
AgsI	TTSAA	3 cut(s)	242, 415, 668
AhdI	GACNNNNNGTC	1 cut(s)	945
AjnI	CCWGG	1 cut(s)	260
AleI	CACNNNNGTG	1 cut(s)	746
AluBI	AGCT	6 cut(s)	8, 13, 29, 270, 475, 868
AluI	AGCT	6 cut(s)	8, 13, 29, 270, 475, 868
Alw26I	GTCTC	2 cut(s)	375, 922
AlwI	GGATC	1 cut(s)	810
AlwNI	CAGNNNCTG	1 cut(s)	22
Ama87I	CYCGRG	1 cut(s)	571
AoxI	GGCC	7 cut(s)	43, 129, 154, 166, 263, 303, 403
ApaI	GGGCCC	1 cut(s)	170
ApeKI	GCWGC	4 cut(s)	5, 178, 558, 781
ArsI	GACNNNNNNTTYG	2 cut(s)	374, 406
AspLEI	GCGC	1 cut(s)	183
AsuC2I	CCSGG	1 cut(s)	307
AsuHPI	GGTGA	4 cut(s)	28, 307, 559, 941
AsuII	TTCGAA	1 cut(s)	470
AvaI	CYCGRG	1 cut(s)	571
AvaII	GGWCC	3 cut(s)	435, 445, 526
BaeGI	GKGCMC	1 cut(s)	170
BanII	GRGCYC	1 cut(s)	170
BbsI	GAAGAC	1 cut(s)	585
BbvI	GCAGC	4 cut(s)	17, 190, 570, 768
BccI	CCATC	3 cut(s)	596, 610, 982
BceAI	ACGGC	8 cut(s)	116, 126, 144, 169, 191, 346, 499, 812
BcgI	CGANNNNNNTGC	2 cut(s)	203, 237
BciT130I	CCWGG	1 cut(s)	262
BcnI	CCSGG	1 cut(s)	307
BcoDI	GTCTC	2 cut(s)	375, 922
BfaI	CTAG	1 cut(s)	633
BfmI	CTRYAG	1 cut(s)	14
BfoI	RGCGCY	1 cut(s)	184
BfrI	CTTAAG	1 cut(s)	806
BglI	GCCNNNNNGGC	1 cut(s)	110
BlpI	GCTNAGC	2 cut(s)	9, 731
Bme1390I	CCNGG	2 cut(s)	262, 307
Bme18I	GGWCC	3 cut(s)	435, 445, 526
BmeRI	GACNNNNNGTC	1 cut(s)	945
BmeT110I	CYCGRG	1 cut(s)	571
BmiI	GGNNCC	9 cut(s)	157, 168, 169, 278, 371, 404, 436, 446, 528
BmrFI	CCNGG	2 cut(s)	262, 307
BmrI	ACTGGG	1 cut(s)	637
BmsI	GCATC	2 cut(s)	647, 777
BmuI	ACTGGG	1 cut(s)	637
BpiI	GAAGAC	1 cut(s)	585
BpmI	CTGGAG	1 cut(s)	292
Bpu1102I	GCTNAGC	2 cut(s)	9, 731
Bpu14I	TTCGAA	1 cut(s)	470
BpuMI	CCSGG	1 cut(s)	307
BsaHI	GRCGYC	1 cut(s)	353
BsaI	GGTCTC	1 cut(s)	922
BsaJI	CCNNGG	4 cut(s)	141, 151, 282, 429
BsaWI	WCCGGW	1 cut(s)	544
Bsc4I	CCNNNNNNNGG	4 cut(s)	163, 164, 273, 535
Bse118I	RCCGGY	3 cut(s)	41, 735, 745
Bse1I	ACTGG	2 cut(s)	27, 632
BseBI	CCWGG	1 cut(s)	262
BseDI	CCNNGG	4 cut(s)	141, 151, 282, 429
BseGI	GGATG	2 cut(s)	607, 621
BseLI	CCNNNNNNNGG	4 cut(s)	163, 164, 273, 535
BseMII	CTCAG	1 cut(s)	722
BseNI	ACTGG	2 cut(s)	27, 632
BseRI	GAGGAG	3 cut(s)	515, 522, 625
BseSI	GKGCMC	1 cut(s)	170
BseX3I	CGGCCG	1 cut(s)	129
BseXI	GCAGC	4 cut(s)	17, 190, 570, 768
BseYI	CCCAGC	2 cut(s)	188, 266
Bsh1236I	CGCG	2 cut(s)	143, 838
Bsh1285I	CGRYCG	3 cut(s)	132, 311, 452
BshFI	GGCC	7 cut(s)	45, 131, 156, 168, 265, 305, 405
BsiEI	CGRYCG	3 cut(s)	132, 311, 452
BsiHKCI	CYCGRG	1 cut(s)	571
BsiSI	CCGG	7 cut(s)	42, 307, 406, 545, 683, 736, 746
BslFI	GGGAC	2 cut(s)	448, 566
BslI	CCNNNNNNNGG	4 cut(s)	163, 164, 273, 535
BsmAI	GTCTC	2 cut(s)	375, 922
BsmBI	CGTCTC	1 cut(s)	375
BsmFI	GGGAC	2 cut(s)	448, 566
BsnI	GGCC	7 cut(s)	45, 131, 156, 168, 265, 305, 405
Bso31I	GGTCTC	1 cut(s)	922
BsoBI	CYCGRG	1 cut(s)	571
Bsp119I	TTCGAA	1 cut(s)	470
Bsp120I	GGGCCC	1 cut(s)	166
Bsp1286I	GDGCHC	1 cut(s)	170
Bsp143I	GATC	4 cut(s)	312, 449, 532, 802
Bsp1720I	GCTNAGC	2 cut(s)	9, 731
BspANI	GGCC	7 cut(s)	45, 131, 156, 168, 265, 305, 405
BspCNI	CTCAG	1 cut(s)	723
BspFNI	CGCG	2 cut(s)	143, 838
BspLI	GGNNCC	9 cut(s)	157, 168, 169, 278, 371, 404, 436, 446, 528
BspPI	GGATC	1 cut(s)	810
BspT104I	TTCGAA	1 cut(s)	470
BspTI	CTTAAG	1 cut(s)	806
BspTNI	GGTCTC	1 cut(s)	922
BsrFI	RCCGGY	3 cut(s)	41, 735, 745
BsrI	ACTGG	2 cut(s)	27, 632
BssAI	RCCGGY	3 cut(s)	41, 735, 745
BssECI	CCNNGG	4 cut(s)	141, 151, 282, 429
BssMI	GATC	4 cut(s)	312, 449, 532, 802
BssNI	GRCGYC	1 cut(s)	353
BssT1I	CCWWGG	1 cut(s)	282
Bst2UI	CCWGG	1 cut(s)	262
BstACI	GRCGYC	1 cut(s)	353
BstAFI	CTTAAG	1 cut(s)	806
BstBI	TTCGAA	1 cut(s)	470
BstC8I	GCNNGC	4 cut(s)	43, 222, 426, 563
BstDEI	CTNAG	2 cut(s)	9, 731
BstDSI	CCRYGG	3 cut(s)	141, 151, 429
BstF5I	GGATG	2 cut(s)	607, 621
BstFNI	CGCG	2 cut(s)	143, 838
BstH2I	RGCGCY	1 cut(s)	184
BstHHI	GCGC	1 cut(s)	183
BstKTI	GATC	4 cut(s)	315, 452, 535, 805
BstMAI	GTCTC	2 cut(s)	375, 922
BstMBI	GATC	4 cut(s)	312, 449, 532, 802
BstMCI	CGRYCG	3 cut(s)	132, 311, 452
BstMWI	GCNNNNNNNGC	8 cut(s)	110, 189, 210, 230, 425, 492, 668, 787
BstNI	CCWGG	1 cut(s)	262
BstNSI	RCATGY	1 cut(s)	682
BstSCI	CCNGG	2 cut(s)	260, 305
BstSFI	CTRYAG	1 cut(s)	14
BstSLI	GKGCMC	1 cut(s)	170
BstUI	CGCG	2 cut(s)	143, 838
BstV1I	GCAGC	4 cut(s)	17, 190, 570, 768
BstV2I	GAAGAC	1 cut(s)	585
BstX2I	RGATCY	1 cut(s)	802
BstYI	RGATCY	1 cut(s)	802
BstZI	CGGCCG	1 cut(s)	129
BsuRI	GGCC	7 cut(s)	45, 131, 156, 168, 265, 305, 405
BtgI	CCRYGG	3 cut(s)	141, 151, 429
BtsCI	GGATG	2 cut(s)	607, 621
BtsI	GCAGTG	1 cut(s)	228
BtsIMutI	CAGTG	2 cut(s)	20, 228
Cac8I	GCNNGC	4 cut(s)	43, 222, 426, 563
CaiI	CAGNNNCTG	1 cut(s)	22
CfoI	GCGC	1 cut(s)	183
Cfr10I	RCCGGY	3 cut(s)	41, 735, 745
Cfr42I	CCGCGG	1 cut(s)	144
CseI	GACGC	3 cut(s)	181, 361, 668
Csp6I	GTAC	3 cut(s)	134, 739, 891
CviAII	CATG	2 cut(s)	679, 761
CviQI	GTAC	3 cut(s)	134, 739, 891
DdeI	CTNAG	2 cut(s)	9, 731
DpnI	GATC	4 cut(s)	314, 451, 534, 804
DpnII	GATC	4 cut(s)	312, 449, 532, 802
DriI	GACNNNNNGTC	1 cut(s)	945
EaeI	YGGCCR	1 cut(s)	129
EagI	CGGCCG	1 cut(s)	129
Eam1105I	GACNNNNNGTC	1 cut(s)	945
EciI	GGCGGA	1 cut(s)	856
EclXI	CGGCCG	1 cut(s)	129
Eco130I	CCWWGG	1 cut(s)	282
Eco24I	GRGCYC	1 cut(s)	170
Eco31I	GGTCTC	1 cut(s)	922
Eco47I	GGWCC	3 cut(s)	435, 445, 526
Eco52I	CGGCCG	1 cut(s)	129
Eco88I	CYCGRG	1 cut(s)	571
EcoO109I	RGGNCCY	1 cut(s)	167
EcoRII	CCWGG	1 cut(s)	260
EcoT14I	CCWWGG	1 cut(s)	282
EcoT38I	GRGCYC	1 cut(s)	170
ErhI	CCWWGG	1 cut(s)	282
Esp3I	CGTCTC	1 cut(s)	375
FaeI	CATG	2 cut(s)	682, 764
FaiI	YATR	7 cut(s)	249, 251, 596, 680, 762, 815, 852
FaqI	GGGAC	2 cut(s)	448, 566
FatI	CATG	2 cut(s)	678, 760
FauI	CCCGC	2 cut(s)	570, 613
FauNDI	CATATG	1 cut(s)	249
FokI	GGATG	2 cut(s)	614, 628
FriOI	GRGCYC	1 cut(s)	170
FspBI	CTAG	1 cut(s)	633
GlaI	GCGC	1 cut(s)	182
GsaI	CCCAGC	2 cut(s)	192, 270
GsuI	CTGGAG	1 cut(s)	292
HaeII	RGCGCY	1 cut(s)	184
HaeIII	GGCC	7 cut(s)	45, 131, 156, 168, 265, 305, 405
HapII	CCGG	7 cut(s)	42, 307, 406, 545, 683, 736, 746
HgaI	GACGC	3 cut(s)	181, 361, 668
HhaI	GCGC	1 cut(s)	183
Hin1I	GRCGYC	1 cut(s)	353
Hin1II	CATG	2 cut(s)	682, 764
Hin6I	GCGC	1 cut(s)	181
HinP1I	GCGC	1 cut(s)	181
HincII	GTYRAC	2 cut(s)	328, 939
HindII	GTYRAC	2 cut(s)	328, 939
HinfI	GANTC	6 cut(s)	242, 287, 338, 411, 686, 819
HpaII	CCGG	7 cut(s)	42, 307, 406, 545, 683, 736, 746
HphI	GGTGA	4 cut(s)	28, 307, 559, 941
Hpy166II	GTNNAC	7 cut(s)	136, 328, 526, 741, 769, 891, 939
Hpy188I	TCNGA	4 cut(s)	197, 449, 643, 864
Hpy188III	TCNNGA	2 cut(s)	536, 754
Hpy8I	GTNNAC	7 cut(s)	136, 328, 526, 741, 769, 891, 939
Hpy99I	CGWCG	6 cut(s)	258, 355, 482, 485, 662, 776
HpyCH4IV	ACGT	1 cut(s)	900
HpyCH4V	TGCA	1 cut(s)	982
HpyF10VI	GCNNNNNNNGC	8 cut(s)	110, 189, 210, 230, 425, 492, 668, 787
HpyF3I	CTNAG	2 cut(s)	9, 731
HpySE526I	ACGT	1 cut(s)	900
Hsp92I	GRCGYC	1 cut(s)	353
Hsp92II	CATG	2 cut(s)	682, 764
HspAI	GCGC	1 cut(s)	181
KroI	GCCGGC	1 cut(s)	41
KroNI	GCCGGC	1 cut(s)	43
KspI	CCGCGG	1 cut(s)	144
Kzo9I	GATC	4 cut(s)	312, 449, 532, 802
LmnI	GCTCC	3 cut(s)	34, 282, 873
Lsp1109I	GCAGC	4 cut(s)	17, 190, 570, 768
LweI	GCATC	2 cut(s)	647, 777
MaeI	CTAG	1 cut(s)	633
MaeII	ACGT	1 cut(s)	900
MaeIII	GTNAC	1 cut(s)	947
MalI	GATC	4 cut(s)	314, 451, 534, 804
MboI	GATC	4 cut(s)	312, 449, 532, 802
MboII	GAAGA	1 cut(s)	590
MfeI	CAATTG	1 cut(s)	161
MflI	RGATCY	1 cut(s)	802
MhlI	GDGCHC	1 cut(s)	170
MluCI	AATT	7 cut(s)	51, 161, 454, 466, 691, 722, 960
MlyI	GAGTC	2 cut(s)	281, 347
MmeI	TCCRAC	1 cut(s)	366
MroNI	GCCGGC	1 cut(s)	41
MseI	TTAA	3 cut(s)	98, 807, 959
MslI	CAYNNNNRTG	1 cut(s)	746
MspA1I	CMGCKG	4 cut(s)	8, 143, 270, 565
MspCI	CTTAAG	1 cut(s)	806
MspI	CCGG	7 cut(s)	42, 307, 406, 545, 683, 736, 746
MspR9I	CCNGG	2 cut(s)	262, 307
MunI	CAATTG	1 cut(s)	161
MvaI	CCWGG	1 cut(s)	262
MvnI	CGCG	2 cut(s)	143, 838
MwoI	GCNNNNNNNGC	8 cut(s)	110, 189, 210, 230, 425, 492, 668, 787
NaeI	GCCGGC	1 cut(s)	43
NciI	CCSGG	1 cut(s)	307
NdeI	CATATG	1 cut(s)	249
NdeII	GATC	4 cut(s)	312, 449, 532, 802
NgoMIV	GCCGGC	1 cut(s)	41
NlaIII	CATG	2 cut(s)	682, 764
NlaIV	GGNNCC	9 cut(s)	157, 168, 169, 278, 371, 404, 436, 446, 528
NmuCI	GTSAC	1 cut(s)	947
NspI	RCATGY	1 cut(s)	682
NspV	TTCGAA	1 cut(s)	470
OliI	CACNNNNGTG	1 cut(s)	746
PcsI	WCGNNNNNNNCGW	5 cut(s)	74, 342, 390, 486, 890
PdiI	GCCGGC	1 cut(s)	43
PfeI	GAWTC	4 cut(s)	242, 411, 686, 819
Ple19I	CGATCG	1 cut(s)	452
PleI	GAGTC	2 cut(s)	281, 346
PpsI	GAGTC	2 cut(s)	281, 346
Psp6I	CCWGG	1 cut(s)	260
PspFI	CCCAGC	2 cut(s)	188, 266
PspGI	CCWGG	1 cut(s)	260
PspN4I	GGNNCC	9 cut(s)	157, 168, 169, 278, 371, 404, 436, 446, 528
PspOMI	GGGCCC	1 cut(s)	166
PstNI	CAGNNNCTG	1 cut(s)	22
PsuI	RGATCY	1 cut(s)	802
PvuI	CGATCG	1 cut(s)	452
PvuII	CAGCTG	2 cut(s)	8, 270
RsaI	GTAC	3 cut(s)	135, 740, 892
RsaNI	GTAC	3 cut(s)	134, 739, 891
RseI	CAYNNNNRTG	1 cut(s)	746
SacII	CCGCGG	1 cut(s)	144
SaqAI	TTAA	3 cut(s)	98, 807, 959
Sau3AI	GATC	4 cut(s)	312, 449, 532, 802
SchI	GAGTC	2 cut(s)	281, 347
ScrFI	CCNGG	2 cut(s)	262, 307
SduI	GDGCHC	1 cut(s)	170
SfaNI	GCATC	2 cut(s)	647, 777
SfcI	CTRYAG	1 cut(s)	14
Sfr303I	CCGCGG	1 cut(s)	144
SfuI	TTCGAA	1 cut(s)	470
SgrAI	CRCCGGYG	1 cut(s)	745
SgrBI	CCGCGG	1 cut(s)	144
SinI	GGWCC	3 cut(s)	435, 445, 526
SmiMI	CAYNNNNRTG	1 cut(s)	746
SmlI	CTYRAG	1 cut(s)	806
SmoI	CTYRAG	1 cut(s)	806
Sse9I	AATT	7 cut(s)	51, 161, 454, 466, 691, 722, 960
SspMI	CTAG	1 cut(s)	633
StyD4I	CCNGG	2 cut(s)	260, 305
StyI	CCWWGG	1 cut(s)	282
TaiI	ACGT	1 cut(s)	903
TaqI	TCGA	7 cut(s)	311, 393, 452, 470, 477, 689, 753
TaqII	GACCGA	1 cut(s)	286
TasI	AATT	7 cut(s)	51, 161, 454, 466, 691, 722, 960
TauI	GCSGC	6 cut(s)	186, 227, 358, 489, 841, 857
TfiI	GAWTC	4 cut(s)	242, 411, 686, 819
Tru1I	TTAA	3 cut(s)	98, 807, 959
Tru9I	TTAA	3 cut(s)	98, 807, 959
TscAI	CASTG	2 cut(s)	27, 235
TseFI	GTSAC	1 cut(s)	947
TseI	GCWGC	4 cut(s)	5, 178, 558, 781
Tsp45I	GTSAC	1 cut(s)	947
TspDTI	ATGAA	1 cut(s)	893
TspGWI	ACGGA	2 cut(s)	393, 399
TspRI	CASTG	2 cut(s)	27, 235
Vha464I	CTTAAG	1 cut(s)	806
VpaK11BI	GGWCC	3 cut(s)	435, 445, 526
XceI	RCATGY	1 cut(s)	682
XspI	CTAG	1 cut(s)	633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.