Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0003205

Physical Location & Seq

Genomic Coordinates Forward (+)

13323627 .. 13325696

Gene Structure 2070 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G144600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGCGGAGATACCACCACCGATGGGTCAGATCAACGGCGGACAACTCATGTTGGGTTCATCCGAGACCGTGGGATCGAAGCGACAGCGAAGGCCCAGCGTCCGATTGGGCGACATCGGAGGAGACCAGCCGTACGATTCGCACGTGCGACGCACCACCAAGCAATGGAAGCTCCCACTTGATCACCGGAAAGACTCCAATAAGTCCTCAAAGACTCGACCTTTAACGAATTTGAGCGCTGGTGCCGACTTCCAAGAAACCCTAGACGGCGAAGATAGAGAGGGAAATCTCGATAGTGTTGCCATTGGTAGCTGGAAGGTCAAGGACACCAAGAAAAGAGCTTCGAACACGAAAAGGGTCAGATCCAATTGGGTCTCTTCCAAGATTGATGAAGGTGGTGATGCTGCTGCTGCTGAAGGGGATGATAAATTTAGCGGAGGTGAGGATGTTGAAGATGGGTATCGGGTTTTTGATGTCGAAAACTCGGAGTCTCCTTTGAAAGACCAGAGCCCAATTCATTCTTCCGACAATTTGGGTGTGGATGGGCATTTGAATGAAAGGGATGTGCTTTACCATGGAAGTAGGAGACCCATGAGGACTAGGGTTTCAGAGGGTAGGGACCACCATGATGGTGTTGAGCTATCTGGGCCGTCGGATAATGATGCAAGGGATTGGAATTGTAGAGGGACTAGTGGGGATAGAAATGGGAATGAAGGCAGAGGGACGTGTGGGGAAGATGGTGTTAGGGTTTGGCTCAATGGGCTAGGATTAGGTCGTTATGCCCCGATGTTTGAAATTCATGAGGTGGATGATGAGGTATTGCCCATGTTAACTTTGGAGGACCTCAAAGATATGGGCATAAATGCAGTTGGTACCAGAAGGAAAATGTATTGTGCAATTCAGAAGCTTGGAAAGGGGTTTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0007275 GO:0007368 GO:0007389 GO:0007507 GO:0008150 GO:0009799 GO:0009855 GO:0009966 GO:0009968 GO:0010646 GO:0010648 GO:0023051 GO:0023057 GO:0030111 GO:0030178 GO:0032501 GO:0032502 GO:0048513 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0060828 GO:0065007 GO:0072359 GO:0090090 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAM_1 SAM_2

Protein Analysis

309

Amino Acids

33.89

Weight (kDa)

5.7

Isoelectric Point (pI)

41.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48800 AT5G23680
fragaria_vesca	FvH4_4g22930 FvH4_5g09120 FvH4_5g09120
malus_domestica	MD04G1000300.v1.1 MD06G1133400.v1.1 MD13G1128000.v1.1 MD13G1128300.v1.1 MD14G1149800.v1.1 MD16G1128400.v1.1
prunus_persica	Prupe.5G144600_v2.0.a1 Prupe.5G144600_v2.0.a1
pyrus_communis	pycom13g11100 pycom14g12450 pycom16g10890
rosa_chinensis	RchiOBHm_Chr4g0429181 RchiOBHm_Chr7g0189071
rosa_laevigata	RLG00000004635 RLG00000007089
rosa_multiflora	Rmu_co7993242.1_g000001 Rmu_co8485617.1_g000001 Rmu_sc0004290.1_g000008 Rmu_sc0004872.1_g000001
rosa_rugosa	Rorug04G0233700 Rorug06G0496000
rosa_samantha	Rh4AG289600 Rh4BG295600 Rh4CG311100 Rh4DG292500 Rh7AG100400 Rh7BG102900 Rh7CG104400 Rh7DG102400
rosa_wichuraiana	Rw4G025090 Rw5G022550 Rw7G008680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	872
AccB1I	GGYRCC	2 cut(s)	242, 872
AccB7I	CCANNNNNTGG	1 cut(s)	165
AciI	CCGC	3 cut(s)	5, 39, 435
AclWI	GGATC	2 cut(s)	82, 357
AcsI	RAATTY	3 cut(s)	229, 428, 795
AcuI	CTGAAG	1 cut(s)	435
AcvI	CACGTG	1 cut(s)	145
AfaI	GTAC	2 cut(s)	134, 874
AfeI	AGCGCT	1 cut(s)	238
AfiI	CCNNNNNNNGG	2 cut(s)	23, 165
AflIII	ACRYGT	1 cut(s)	725
AgsI	TTSAA	4 cut(s)	452, 499, 553, 794
AhlI	ACTAGT	1 cut(s)	689
AjiI	CACGTC	1 cut(s)	726
AjuI	GAANNNNNNNTTGG	2 cut(s)	505, 537
AluBI	AGCT	5 cut(s)	172, 312, 341, 640, 907
AluI	AGCT	5 cut(s)	172, 312, 341, 640, 907
Alw26I	GTCTC	5 cut(s)	59, 117, 379, 495, 580
AlwI	GGATC	2 cut(s)	82, 357
Aor51HI	AGCGCT	1 cut(s)	238
AoxI	GGCC	2 cut(s)	92, 647
ApeKI	GCWGC	3 cut(s)	404, 407, 410
ApoI	RAATTY	3 cut(s)	229, 428, 795
Asp718I	GGTACC	1 cut(s)	872
AspLEI	GCGC	1 cut(s)	239
AspS9I	GGNCC	4 cut(s)	93, 619, 647, 841
AsuHPI	GGTGA	3 cut(s)	176, 410, 452
AsuII	TTCGAA	1 cut(s)	344
AvaII	GGWCC	2 cut(s)	619, 841
BanI	GGYRCC	2 cut(s)	242, 872
BanII	GRGCYC	1 cut(s)	512
BbrPI	CACGTG	1 cut(s)	145
BbvI	GCAGC	3 cut(s)	391, 394, 397
BccI	CCATC	5 cut(s)	16, 449, 536, 623, 731
BceAI	ACGGC	4 cut(s)	52, 115, 283, 634
BcgI	CGANNNNNNTGC	2 cut(s)	281, 315
BclI	TGATCA	1 cut(s)	181
BcoDI	GTCTC	5 cut(s)	59, 117, 379, 495, 580
BcuI	ACTAGT	1 cut(s)	689
BfaI	CTAG	4 cut(s)	263, 600, 690, 764
BfoI	RGCGCY	1 cut(s)	240
BisI	GCNGC	3 cut(s)	405, 408, 411
BlsI	GCNGC	3 cut(s)	406, 409, 412
Bme18I	GGWCC	2 cut(s)	619, 841
BmgBI	CACGTC	1 cut(s)	726
BmgT120I	GGNCC	4 cut(s)	93, 619, 647, 841
BmiI	GGNNCC	3 cut(s)	244, 620, 874
BmsI	GCATC	2 cut(s)	391, 652
Bpu14I	TTCGAA	1 cut(s)	344
BsaAI	YACGTR	1 cut(s)	145
BsaBI	GATNNNNATC	1 cut(s)	459
BsaI	GGTCTC	4 cut(s)	59, 117, 379, 580
BsaJI	CCNNGG	2 cut(s)	69, 574
BsaWI	WCCGGW	1 cut(s)	186
Bsc4I	CCNNNNNNNGG	2 cut(s)	23, 165
Bse3DI	GCAATG	1 cut(s)	170
Bse8I	GATNNNNATC	1 cut(s)	459
BseDI	CCNNGG	2 cut(s)	69, 574
BseGI	GGATG	6 cut(s)	59, 427, 451, 547, 568, 814
BseJI	GATNNNNATC	1 cut(s)	459
BseLI	CCNNNNNNNGG	2 cut(s)	23, 165
BseMI	GCAATG	1 cut(s)	170
BseRI	GAGGAG	1 cut(s)	135
BseXI	GCAGC	3 cut(s)	391, 394, 397
BseYI	CCCAGC	1 cut(s)	95
BshFI	GGCC	2 cut(s)	94, 649
BshNI	GGYRCC	2 cut(s)	242, 872
BsiSI	CCGG	1 cut(s)	187
BsiWI	CGTACG	1 cut(s)	132
BslFI	GGGAC	3 cut(s)	632, 700, 736
BslI	CCNNNNNNNGG	2 cut(s)	23, 165
BsmAI	GTCTC	5 cut(s)	59, 117, 379, 495, 580
BsmFI	GGGAC	3 cut(s)	632, 700, 736
BsnI	GGCC	2 cut(s)	94, 649
Bso31I	GGTCTC	4 cut(s)	59, 117, 379, 580
Bsp119I	TTCGAA	1 cut(s)	344
Bsp1286I	GDGCHC	1 cut(s)	512
Bsp143I	GATC	4 cut(s)	30, 74, 181, 362
Bsp19I	CCATGG	1 cut(s)	574
BspACI	CCGC	3 cut(s)	5, 39, 435
BspANI	GGCC	2 cut(s)	94, 649
BspHI	TCATGA	1 cut(s)	799
BspLI	GGNNCC	3 cut(s)	244, 620, 874
BspPI	GGATC	2 cut(s)	82, 357
BspT104I	TTCGAA	1 cut(s)	344
BspT107I	GGYRCC	2 cut(s)	242, 872
BspTNI	GGTCTC	4 cut(s)	59, 117, 379, 580
BsrDI	GCAATG	1 cut(s)	170
BssECI	CCNNGG	2 cut(s)	69, 574
BssMI	GATC	4 cut(s)	30, 74, 181, 362
BssT1I	CCWWGG	1 cut(s)	574
Bst4CI	ACNGT	1 cut(s)	70
Bst6I	CTCTTC	1 cut(s)	382
BstBAI	YACGTR	1 cut(s)	145
BstBI	TTCGAA	1 cut(s)	344
BstDSI	CCRYGG	2 cut(s)	69, 574
BstF5I	GGATG	6 cut(s)	59, 427, 451, 547, 568, 814
BstH2I	RGCGCY	1 cut(s)	240
BstHHI	GCGC	1 cut(s)	239
BstKTI	GATC	4 cut(s)	33, 77, 184, 365
BstMAI	GTCTC	5 cut(s)	59, 117, 379, 495, 580
BstMBI	GATC	4 cut(s)	30, 74, 181, 362
BstMWI	GCNNNNNNNGC	4 cut(s)	169, 410, 646, 760
BstV1I	GCAGC	3 cut(s)	391, 394, 397
BstX2I	RGATCY	1 cut(s)	362
BstXI	CCANNNNNNTGG	1 cut(s)	629
BstYI	RGATCY	1 cut(s)	362
BsuRI	GGCC	2 cut(s)	94, 649
BtgI	CCRYGG	2 cut(s)	69, 574
BtrI	CACGTC	1 cut(s)	726
BtsCI	GGATG	6 cut(s)	59, 427, 451, 547, 568, 814
CciI	TCATGA	1 cut(s)	799
CfoI	GCGC	1 cut(s)	239
Cfr13I	GGNCC	4 cut(s)	93, 619, 647, 841
CseI	GACGC	2 cut(s)	88, 159
Csp6I	GTAC	2 cut(s)	133, 873
CviAII	CATG	6 cut(s)	49, 575, 592, 626, 800, 826
CviQI	GTAC	2 cut(s)	133, 873
DpnI	GATC	4 cut(s)	32, 76, 183, 364
DpnII	GATC	4 cut(s)	30, 74, 181, 362
Eam1104I	CTCTTC	1 cut(s)	382
EarI	CTCTTC	1 cut(s)	382
EciI	GGCGGA	2 cut(s)	20, 54
Eco130I	CCWWGG	1 cut(s)	574
Eco24I	GRGCYC	1 cut(s)	512
Eco31I	GGTCTC	4 cut(s)	59, 117, 379, 580
Eco47I	GGWCC	2 cut(s)	619, 841
Eco47III	AGCGCT	1 cut(s)	238
Eco57I	CTGAAG	1 cut(s)	435
Eco72I	CACGTG	1 cut(s)	145
EcoO109I	RGGNCCY	1 cut(s)	841
EcoT14I	CCWWGG	1 cut(s)	574
EcoT38I	GRGCYC	1 cut(s)	512
ErhI	CCWWGG	1 cut(s)	574
FaeI	CATG	6 cut(s)	52, 578, 595, 629, 803, 829
FaiI	YATR	9 cut(s)	50, 576, 593, 627, 780, 801, 827, 854, 860
FaqI	GGGAC	3 cut(s)	632, 700, 736
FatI	CATG	6 cut(s)	48, 574, 591, 625, 799, 825
FbaI	TGATCA	1 cut(s)	181
Fnu4HI	GCNGC	3 cut(s)	405, 408, 411
FokI	GGATG	6 cut(s)	46, 434, 458, 554, 575, 821
FriOI	GRGCYC	1 cut(s)	512
Fsp4HI	GCNGC	3 cut(s)	405, 408, 411
FspBI	CTAG	4 cut(s)	263, 600, 690, 764
GlaI	GCGC	1 cut(s)	238
GluI	GCNGC	3 cut(s)	405, 408, 411
GsaI	CCCAGC	1 cut(s)	99
HaeII	RGCGCY	1 cut(s)	240
HaeIII	GGCC	2 cut(s)	94, 649
HapII	CCGG	1 cut(s)	187
HgaI	GACGC	2 cut(s)	88, 159
HhaI	GCGC	1 cut(s)	239
Hin1II	CATG	6 cut(s)	52, 578, 595, 629, 803, 829
Hin6I	GCGC	1 cut(s)	237
HinP1I	GCGC	1 cut(s)	237
HincII	GTYRAC	1 cut(s)	831
HindII	GTYRAC	1 cut(s)	831
HindIII	AAGCTT	1 cut(s)	905
HinfI	GANTC	4 cut(s)	137, 194, 214, 488
HpaI	GTTAAC	1 cut(s)	831
HpaII	CCGG	1 cut(s)	187
HphI	GGTGA	3 cut(s)	176, 410, 452
Hpy166II	GTNNAC	1 cut(s)	831
Hpy188III	TCNNGA	3 cut(s)	290, 800, 924
Hpy8I	GTNNAC	1 cut(s)	831
Hpy99I	CGWCG	2 cut(s)	153, 655
HpyAV	CCTTC	6 cut(s)	84, 310, 386, 410, 707, 873
HpyCH4III	ACNGT	1 cut(s)	70
HpyCH4IV	ACGT	2 cut(s)	144, 725
HpyCH4V	TGCA	3 cut(s)	665, 866, 896
HpyF10VI	GCNNNNNNNGC	4 cut(s)	169, 410, 646, 760
HpySE526I	ACGT	2 cut(s)	144, 725
Hsp92II	CATG	6 cut(s)	52, 578, 595, 629, 803, 829
HspAI	GCGC	1 cut(s)	237
KpnI	GGTACC	1 cut(s)	876
Ksp22I	TGATCA	1 cut(s)	181
KspAI	GTTAAC	1 cut(s)	831
Kzo9I	GATC	4 cut(s)	30, 74, 181, 362
LmnI	GCTCC	1 cut(s)	177
LpnPI	CCDG	8 cut(s)	109, 140, 200, 225, 298, 518, 630, 889
Lsp1109I	GCAGC	3 cut(s)	391, 394, 397
LweI	GCATC	2 cut(s)	391, 652
MaeI	CTAG	4 cut(s)	263, 600, 690, 764
MaeII	ACGT	2 cut(s)	144, 725
MalI	GATC	4 cut(s)	32, 76, 183, 364
MboI	GATC	4 cut(s)	30, 74, 181, 362
MboII	GAAGA	5 cut(s)	284, 369, 464, 513, 746
MfeI	CAATTG	1 cut(s)	367
MflI	RGATCY	1 cut(s)	362
MhlI	GDGCHC	1 cut(s)	512
MluCI	AATT	8 cut(s)	229, 367, 428, 513, 529, 676, 795, 897
MlyI	GAGTC	3 cut(s)	188, 208, 497
MmeI	TCCRAC	2 cut(s)	549, 633
MseI	TTAA	2 cut(s)	224, 830
MslI	CAYNNNNRTG	3 cut(s)	552, 627, 630
MspI	CCGG	1 cut(s)	187
MunI	CAATTG	1 cut(s)	367
MwoI	GCNNNNNNNGC	4 cut(s)	169, 410, 646, 760
NcoI	CCATGG	1 cut(s)	574
NdeII	GATC	4 cut(s)	30, 74, 181, 362
NlaIII	CATG	6 cut(s)	52, 578, 595, 629, 803, 829
NlaIV	GGNNCC	3 cut(s)	244, 620, 874
NspV	TTCGAA	1 cut(s)	344
PagI	TCATGA	1 cut(s)	799
PcsI	WCGNNNNNNNCGW	1 cut(s)	141
PfeI	GAWTC	1 cut(s)	137
Pfl23II	CGTACG	1 cut(s)	132
PflMI	CCANNNNNTGG	1 cut(s)	165
PkrI	GCNGC	3 cut(s)	406, 409, 412
PleI	GAGTC	3 cut(s)	188, 208, 496
PmaCI	CACGTG	1 cut(s)	145
PmlI	CACGTG	1 cut(s)	145
PpsI	GAGTC	3 cut(s)	188, 208, 496
Ppu21I	YACGTR	1 cut(s)	145
PpuMI	RGGWCCY	1 cut(s)	841
Psp5II	RGGWCCY	1 cut(s)	841
PspCI	CACGTG	1 cut(s)	145
PspFI	CCCAGC	1 cut(s)	95
PspLI	CGTACG	1 cut(s)	132
PspN4I	GGNNCC	3 cut(s)	244, 620, 874
PspPI	GGNCC	4 cut(s)	93, 619, 647, 841
PspPPI	RGGWCCY	1 cut(s)	841
PsuI	RGATCY	1 cut(s)	362
RsaI	GTAC	2 cut(s)	134, 874
RsaNI	GTAC	2 cut(s)	133, 873
RseI	CAYNNNNRTG	3 cut(s)	552, 627, 630
SaqAI	TTAA	2 cut(s)	224, 830
SatI	GCNGC	3 cut(s)	405, 408, 411
Sau3AI	GATC	4 cut(s)	30, 74, 181, 362
Sau96I	GGNCC	4 cut(s)	93, 619, 647, 841
SchI	GAGTC	3 cut(s)	188, 208, 497
SduI	GDGCHC	1 cut(s)	512
SfaNI	GCATC	2 cut(s)	391, 652
SfuI	TTCGAA	1 cut(s)	344
SinI	GGWCC	2 cut(s)	619, 841
SmiMI	CAYNNNNRTG	3 cut(s)	552, 627, 630
SpeI	ACTAGT	1 cut(s)	689
Sse9I	AATT	8 cut(s)	229, 367, 428, 513, 529, 676, 795, 897
SsiI	CCGC	3 cut(s)	5, 39, 435
SspMI	CTAG	4 cut(s)	263, 600, 690, 764
StyI	CCWWGG	1 cut(s)	574
TaaI	ACNGT	1 cut(s)	70
TaiI	ACGT	2 cut(s)	147, 728
TaqI	TCGA	5 cut(s)	77, 217, 291, 344, 477
TasI	AATT	8 cut(s)	229, 367, 428, 513, 529, 676, 795, 897
TfiI	GAWTC	1 cut(s)	137
Tru1I	TTAA	2 cut(s)	224, 830
Tru9I	TTAA	2 cut(s)	224, 830
TseI	GCWGC	3 cut(s)	404, 407, 410
TspDTI	ATGAA	6 cut(s)	48, 405, 506, 570, 726, 788
Van91I	CCANNNNNTGG	1 cut(s)	165
VpaK11BI	GGWCC	2 cut(s)	619, 841
XapI	RAATTY	3 cut(s)	229, 428, 795
XcmI	CCANNNNNNNNNTGG	2 cut(s)	103, 832
XspI	CTAG	4 cut(s)	263, 600, 690, 764

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.