pycom14g12450

Sterile alpha motif.

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
Physical Location & Seq
Forward (+)
15452626 .. 15454156
1531 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g12450.2

Sequence Viewer

Length: 1449 bp
ATGGGACATTCCCATCTGATGATAATATGGAGAGAGTGCCACGTGTCACCTTCCTCTAAGACTCCAACGCACCTTCTCTCTCTCGGTCTCTACCCCCAACCACCCAAATCCAAAGCCACTCATTCACTCACTGAAACCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACTCTTCCCCCATCAATCACTTCATTTACTTCAAAACCCTCTCTTTCTCTCTCTAGAAACCGACCAAAAGAACAAACTTGTAGGCACAACGCAGGAAAGCGCTACATCCCAAAGGCCAAAGAGCCCTTTTGCTTCTCCCCCCATTTTCCACTTAACAAAAAACACACACAAATTCGGAAAGTTCGAGTCTTTTCGCAGAGAAACTCAAATTCCAGCGAACAAAATTGGATTTTTGGGTCAACCGCAGCCAGTGCCTCAGATCAACGGCGGAGGACAGTTTTTGATGGGTTCGTCCGAGAAAAGGAAAGGAACAGGTCGGTAGGATCGAAGCGACAGCGGAGGCCCAGCGTCCGGTTGGGCGACATCGGAGGAGACCAGCCGTACGATTCGCAGGTGCGCCGCACCACCAAGCCGTGGAGGCTCCCGCCGGACCACCGCAAAGACGTCAATAAGTCCTCAAAGCCTCGACCTTTAACGAATTTAAGCTCCGTTGGGGAATTCCATGAAACCCTAGACGGCGAAGACAGAGAGGCCAATCTCGATAGTGTTGCCATTGGGAGCTGGAAGGTCAAGGACGCCAAGAAACGGGCTTCGAGCGTCACGAAACGGGTCAGATCCAATTGGGTATCTTCCAAGATCGATGAAGGTGGCGGCGAAGGGGACGAGAAATTCAGTGGAGCGGAGGACGTCGATGATGGGTATCATCGCGATTTTGATGTCGAAAACTCGGAAAGCCCGTTGAAAGAGCGGAGTCCAATTCATAGTTCGGAGAATTTGGGTGTGGATGGGCATGCCAATGGAAGGGAGCTGCTTTACCATGGAAGTAGAAGACCCATTAGGACCAGGATTTCGGAGGGTAGGGATAACCATGATGGTATTGAGCTATCCGGGCCGTCGGATAACGATGCCAGGGATTGGAATTGTAGAGGGACAAGTGAGGTTAGAATTGGGAATGAAGGAAGAGGAAGGTGTGGAGAAGATGGGGTTAGGGTTTGGCTCAATGGGTTAGGGTTAGGGCGGTATGCGCCGGTGTTCGAAATTCATGAGGTGGATGATGAGGTATTGCCCATTTGGGTCCAGAAGGAAAATGTATTGTGCAATTCAGAAGCTGGGGAAGGGGTTTTCTTGACTTTTGCTTTTGTGACTGTTGGCAAACGAAAAATCGAAAAAATCCTCAGCCATGGCAACGTAAGAGACATGCCTGCAAGTAAAACTGGTTTGAGCTTTTTGGTTATATTTTTTTCTCTCAAATCTCAACTCAGTAGTATTTTGGATAAGTAG

Protein Analysis

483

Amino Acids

53.99

Weight (kDa)

9.51

Isoelectric Point (pI)

48.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 550
AatII GACGTC 2 cut(s) 615, 858
Acc36I ACCTGC 1 cut(s) 550
AccB7I CCANNNNNTGG 2 cut(s) 582, 1083
AccBSI CCGCTC 2 cut(s) 848, 916
AccII CGCG 1 cut(s) 876
AclWI GGATC 2 cut(s) 499, 777
AcsI RAATTY 7 cut(s) 339, 376, 646, 665, 836, 940, 1206
AcvI CACGTG 1 cut(s) 43
AcyI GRCGYC 3 cut(s) 612, 744, 855
AfaI GTAC 1 cut(s) 551
AfeI AGCGCT 1 cut(s) 269
AfiI CCNNNNNNNGG 6 cut(s) 469, 519, 582, 753, 969, 1083
AflIII ACRYGT 1 cut(s) 42
AgsI TTSAA 2 cut(s) 201, 910
AjnI CCWGG 2 cut(s) 1010, 1076
AjuI GAANNNNNNNTTGG 2 cut(s) 916, 948
AluBI AGCT 6 cut(s) 654, 729, 976, 1051, 1277, 1392
AluI AGCT 6 cut(s) 654, 729, 976, 1051, 1277, 1392
Alw26I GTCTC 3 cut(s) 92, 534, 1356
AlwI GGATC 2 cut(s) 499, 777
AlwNI CAGNNNCTG 1 cut(s) 1277
Aor51HI AGCGCT 1 cut(s) 269
AoxI GGCC 4 cut(s) 282, 509, 699, 1058
ApeKI GCWGC 2 cut(s) 413, 976
ApoI RAATTY 7 cut(s) 339, 376, 646, 665, 836, 940, 1206
ArsI GACNNNNNNTTYG 2 cut(s) 1000, 1032
AspLEI GCGC 3 cut(s) 270, 567, 1195
AspS9I GGNCC 5 cut(s) 510, 598, 1008, 1058, 1243
AsuC2I CCSGG 1 cut(s) 1057
AsuHPI GGTGA 1 cut(s) 39
AsuII TTCGAA 1 cut(s) 1203
AvaII GGWCC 3 cut(s) 598, 1008, 1243
BanII GRGCYC 1 cut(s) 294
BbrPI CACGTG 1 cut(s) 43
BbsI GAAGAC 2 cut(s) 696, 1003
BbvCI CCTCAGC 1 cut(s) 1343
BbvI GCAGC 2 cut(s) 425, 963
BccI CCATC 7 cut(s) 21, 187, 446, 857, 947, 1034, 1142
BceAI ACGGC 5 cut(s) 449, 532, 565, 700, 1045
BcgI CGANNNNNNTGC 2 cut(s) 698, 732
BciT130I CCWGG 2 cut(s) 1012, 1078
BcnI CCSGG 1 cut(s) 1057
BcoDI GTCTC 3 cut(s) 92, 534, 1356
BfaI CTAG 2 cut(s) 222, 680
BfoI RGCGCY 1 cut(s) 271
BfuAI ACCTGC 1 cut(s) 550
BglI GCCNNNNNGGC 1 cut(s) 586
BisI GCNGC 4 cut(s) 414, 568, 820, 977
BlsI GCNGC 4 cut(s) 415, 569, 821, 978
Bme1390I CCNGG 3 cut(s) 1012, 1057, 1078
Bme18I GGWCC 3 cut(s) 598, 1008, 1243
BmgT120I GGNCC 5 cut(s) 510, 598, 1008, 1058, 1243
BmiI GGNNCC 2 cut(s) 590, 1244
BmrFI CCNGG 3 cut(s) 1012, 1057, 1078
BmsI GCATC 1 cut(s) 1063
BpiI GAAGAC 2 cut(s) 696, 1003
Bpu10I CCTNAGC 1 cut(s) 1343
Bpu14I TTCGAA 1 cut(s) 1203
BpuMI CCSGG 1 cut(s) 1057
Bsa29I ATCGAT 1 cut(s) 807
BsaAI YACGTR 1 cut(s) 43
BsaBI GATNNNNATC 1 cut(s) 867
BsaHI GRCGYC 3 cut(s) 612, 744, 855
BsaI GGTCTC 2 cut(s) 92, 534
BsaJI CCNNGG 4 cut(s) 581, 985, 1077, 1348
BsaWI WCCGGW 1 cut(s) 519
Bsc4I CCNNNNNNNGG 6 cut(s) 469, 519, 582, 753, 969, 1083
Bse118I RCCGGY 1 cut(s) 1195
Bse1I ACTGG 2 cut(s) 417, 1387
Bse8I GATNNNNATC 1 cut(s) 867
BseBI CCWGG 2 cut(s) 1012, 1078
BseCI ATCGAT 1 cut(s) 807
BseDI CCNNGG 4 cut(s) 581, 985, 1077, 1348
BseGI GGATG 3 cut(s) 273, 958, 1225
BseJI GATNNNNATC 1 cut(s) 867
BseLI CCNNNNNNNGG 6 cut(s) 469, 519, 582, 753, 969, 1083
BseMII CTCAG 3 cut(s) 438, 1357, 1441
BseNI ACTGG 2 cut(s) 417, 1387
BseRI GAGGAG 1 cut(s) 552
BseXI GCAGC 2 cut(s) 425, 963
BseYI CCCAGC 2 cut(s) 512, 1277
Bsh1236I CGCG 1 cut(s) 876
BshFI GGCC 4 cut(s) 284, 511, 701, 1060
BshVI ATCGAT 1 cut(s) 807
BsiSI CCGG 4 cut(s) 520, 596, 1056, 1196
BsiWI CGTACG 1 cut(s) 549
BslFI GGGAC 3 cut(s) 18, 842, 1111
BslI CCNNNNNNNGG 6 cut(s) 469, 519, 582, 753, 969, 1083
BsmAI GTCTC 3 cut(s) 92, 534, 1356
BsmFI GGGAC 3 cut(s) 18, 842, 1111
BsnI GGCC 4 cut(s) 284, 511, 701, 1060
Bso31I GGTCTC 2 cut(s) 92, 534
Bsp119I TTCGAA 1 cut(s) 1203
Bsp1286I GDGCHC 1 cut(s) 294
Bsp143I GATC 4 cut(s) 427, 491, 782, 804
Bsp19I CCATGG 2 cut(s) 985, 1348
Bsp68I TCGCGA 1 cut(s) 876
BspANI GGCC 4 cut(s) 284, 511, 701, 1060
BspCNI CTCAG 3 cut(s) 437, 1356, 1440
BspDI ATCGAT 1 cut(s) 807
BspFNI CGCG 1 cut(s) 876
BspHI TCATGA 1 cut(s) 1210
BspLI GGNNCC 2 cut(s) 590, 1244
BspMI ACCTGC 1 cut(s) 550
BspPI GGATC 2 cut(s) 499, 777
BspT104I TTCGAA 1 cut(s) 1203
BspTNI GGTCTC 2 cut(s) 92, 534
BsrBI CCGCTC 2 cut(s) 848, 916
BsrFI RCCGGY 1 cut(s) 1195
BsrI ACTGG 2 cut(s) 417, 1387
BssAI RCCGGY 1 cut(s) 1195
BssECI CCNNGG 4 cut(s) 581, 985, 1077, 1348
BssMI GATC 4 cut(s) 427, 491, 782, 804
BssNI GRCGYC 3 cut(s) 612, 744, 855
BssT1I CCWWGG 2 cut(s) 985, 1348
Bst2UI CCWGG 2 cut(s) 1012, 1078
Bst4CI ACNGT 2 cut(s) 445, 1315
Bst6I CTCTTC 2 cut(s) 177, 1123
BstACI GRCGYC 3 cut(s) 612, 744, 855
BstAPI GCANNNNNTGC 1 cut(s) 419
BstBAI YACGTR 1 cut(s) 43
BstBI TTCGAA 1 cut(s) 1203
BstC8I GCNNGC 2 cut(s) 960, 1371
BstDEI CTNAG 4 cut(s) 57, 424, 1343, 1427
BstDSI CCRYGG 3 cut(s) 581, 985, 1348
BstF5I GGATG 3 cut(s) 273, 958, 1225
BstFNI CGCG 1 cut(s) 876
BstH2I RGCGCY 1 cut(s) 271
BstHHI GCGC 3 cut(s) 270, 567, 1195
BstKTI GATC 4 cut(s) 430, 494, 785, 807
BstMAI GTCTC 3 cut(s) 92, 534, 1356
BstMBI GATC 4 cut(s) 427, 491, 782, 804
BstMWI GCNNNNNNNGC 4 cut(s) 419, 586, 1057, 1192
BstNI CCWGG 2 cut(s) 1012, 1078
BstNSI RCATGY 2 cut(s) 962, 1369
BstSCI CCNGG 3 cut(s) 1010, 1055, 1076
BstUI CGCG 1 cut(s) 876
BstV1I GCAGC 2 cut(s) 425, 963
BstV2I GAAGAC 2 cut(s) 696, 1003
BstX2I RGATCY 1 cut(s) 782
BstYI RGATCY 1 cut(s) 782
Bsu15I ATCGAT 1 cut(s) 807
BsuRI GGCC 4 cut(s) 284, 511, 701, 1060
BsuTUI ATCGAT 1 cut(s) 807
BtgI CCRYGG 3 cut(s) 581, 985, 1348
BtgZI GCGATG 1 cut(s) 857
BtsCI GGATG 3 cut(s) 273, 958, 1225
BtsIMutI CAGTG 3 cut(s) 129, 424, 847
BtuMI TCGCGA 1 cut(s) 876
BveI ACCTGC 1 cut(s) 550
Cac8I GCNNGC 2 cut(s) 960, 1371
CaiI CAGNNNCTG 1 cut(s) 1277
CciI TCATGA 1 cut(s) 1210
CfoI GCGC 3 cut(s) 270, 567, 1195
Cfr10I RCCGGY 1 cut(s) 1195
Cfr13I GGNCC 5 cut(s) 510, 598, 1008, 1058, 1243
ClaI ATCGAT 1 cut(s) 807
CseI GACGC 3 cut(s) 505, 752, 754
Csp6I GTAC 1 cut(s) 550
CviAII CATG 7 cut(s) 671, 959, 986, 1037, 1211, 1349, 1366
CviQI GTAC 1 cut(s) 550
DdeI CTNAG 4 cut(s) 57, 424, 1343, 1427
DpnI GATC 4 cut(s) 429, 493, 784, 806
DpnII GATC 4 cut(s) 427, 491, 782, 804
Eam1104I CTCTTC 2 cut(s) 177, 1123
EarI CTCTTC 2 cut(s) 177, 1123
EciI GGCGGA 1 cut(s) 451
Eco130I CCWWGG 2 cut(s) 985, 1348
Eco24I GRGCYC 1 cut(s) 294
Eco31I GGTCTC 2 cut(s) 92, 534
Eco47I GGWCC 3 cut(s) 598, 1008, 1243
Eco47III AGCGCT 1 cut(s) 269
Eco72I CACGTG 1 cut(s) 43
EcoRI GAATTC 1 cut(s) 665
EcoRII CCWGG 2 cut(s) 1010, 1076
EcoT14I CCWWGG 2 cut(s) 985, 1348
EcoT38I GRGCYC 1 cut(s) 294
ErhI CCWWGG 2 cut(s) 985, 1348
FaeI CATG 7 cut(s) 674, 962, 989, 1040, 1214, 1352, 1369
FaqI GGGAC 3 cut(s) 18, 842, 1111
FatI CATG 7 cut(s) 670, 958, 985, 1036, 1210, 1348, 1365
FauI CCCGC 1 cut(s) 600
Fnu4HI GCNGC 4 cut(s) 414, 568, 820, 977
FokI GGATG 3 cut(s) 260, 965, 1232
FriOI GRGCYC 1 cut(s) 294
Fsp4HI GCNGC 4 cut(s) 414, 568, 820, 977
FspBI CTAG 2 cut(s) 222, 680
GlaI GCGC 3 cut(s) 269, 566, 1194
GluI GCNGC 4 cut(s) 414, 568, 820, 977
GsaI CCCAGC 2 cut(s) 516, 1281
HaeII RGCGCY 1 cut(s) 271
HaeIII GGCC 4 cut(s) 284, 511, 701, 1060
HapII CCGG 4 cut(s) 520, 596, 1056, 1196
HgaI GACGC 3 cut(s) 505, 752, 754
HhaI GCGC 3 cut(s) 270, 567, 1195
Hin1I GRCGYC 3 cut(s) 612, 744, 855
Hin1II CATG 7 cut(s) 674, 962, 989, 1040, 1214, 1352, 1369
Hin6I GCGC 3 cut(s) 268, 565, 1193
HinP1I GCGC 3 cut(s) 268, 565, 1193
HincII GTYRAC 1 cut(s) 408
HindII GTYRAC 1 cut(s) 408
HinfI GANTC 4 cut(s) 61, 354, 554, 919
HpaII CCGG 4 cut(s) 520, 596, 1056, 1196
HphI GGTGA 1 cut(s) 39
Hpy166II GTNNAC 1 cut(s) 408
Hpy188III TCNNGA 7 cut(s) 222, 707, 769, 875, 1211, 1246, 1294
Hpy8I GTNNAC 1 cut(s) 408
Hpy99I CGWCG 2 cut(s) 860, 1066
HpyCH4III ACNGT 2 cut(s) 445, 1315
HpyCH4IV ACGT 4 cut(s) 42, 612, 855, 1356
HpyCH4V TGCA 2 cut(s) 1266, 1373
HpyF10VI GCNNNNNNNGC 4 cut(s) 419, 586, 1057, 1192
HpyF3I CTNAG 4 cut(s) 57, 424, 1343, 1427
HpySE526I ACGT 4 cut(s) 42, 612, 855, 1356
Hsp92I GRCGYC 3 cut(s) 612, 744, 855
Hsp92II CATG 7 cut(s) 674, 962, 989, 1040, 1214, 1352, 1369
HspAI GCGC 3 cut(s) 268, 565, 1193
Kzo9I GATC 4 cut(s) 427, 491, 782, 804
LmnI GCTCC 5 cut(s) 594, 659, 726, 845, 973
Lsp1109I GCAGC 2 cut(s) 425, 963
LweI GCATC 1 cut(s) 1063
MaeI CTAG 2 cut(s) 222, 680
MaeII ACGT 4 cut(s) 42, 612, 855, 1356
MaeIII GTNAC 3 cut(s) 45, 766, 1309
MalI GATC 4 cut(s) 429, 493, 784, 806
MbiI CCGCTC 2 cut(s) 848, 916
MboI GATC 4 cut(s) 427, 491, 782, 804
MboII GAAGA 6 cut(s) 164, 701, 789, 1008, 1140, 1157
MfeI CAATTG 1 cut(s) 787
MflI RGATCY 1 cut(s) 782
MhlI GDGCHC 1 cut(s) 294
MlyI GAGTC 3 cut(s) 55, 363, 928
MmeI TCCRAC 2 cut(s) 89, 1044
MseI TTAA 3 cut(s) 321, 641, 650
MslI CAYNNNNRTG 1 cut(s) 963
MspA1I CMGCKG 1 cut(s) 505
MspI CCGG 4 cut(s) 520, 596, 1056, 1196
MspR9I CCNGG 3 cut(s) 1012, 1057, 1078
MunI CAATTG 1 cut(s) 787
MvaI CCWGG 2 cut(s) 1012, 1078
MvnI CGCG 1 cut(s) 876
MwoI GCNNNNNNNGC 4 cut(s) 419, 586, 1057, 1192
NciI CCSGG 1 cut(s) 1057
NcoI CCATGG 2 cut(s) 985, 1348
NdeII GATC 4 cut(s) 427, 491, 782, 804
NlaIII CATG 7 cut(s) 674, 962, 989, 1040, 1214, 1352, 1369
NlaIV GGNNCC 2 cut(s) 590, 1244
NmuCI GTSAC 3 cut(s) 45, 766, 1309
NruI TCGCGA 1 cut(s) 876
NspI RCATGY 2 cut(s) 962, 1369
NspV TTCGAA 1 cut(s) 1203
PaeI GCATGC 1 cut(s) 962
PagI TCATGA 1 cut(s) 1210
PaqCI CACCTGC 1 cut(s) 550
PcsI WCGNNNNNNNCGW 4 cut(s) 349, 491, 767, 902
PfeI GAWTC 1 cut(s) 554
Pfl23II CGTACG 1 cut(s) 549
PflMI CCANNNNNTGG 2 cut(s) 582, 1083
PkrI GCNGC 4 cut(s) 415, 569, 821, 978
PleI GAGTC 3 cut(s) 55, 362, 927
PmaCI CACGTG 1 cut(s) 43
PmlI CACGTG 1 cut(s) 43
PpsI GAGTC 3 cut(s) 55, 362, 927
Ppu21I YACGTR 1 cut(s) 43
Psp6I CCWGG 2 cut(s) 1010, 1076
PspCI CACGTG 1 cut(s) 43
PspFI CCCAGC 2 cut(s) 512, 1277
PspGI CCWGG 2 cut(s) 1010, 1076
PspLI CGTACG 1 cut(s) 549
PspN4I GGNNCC 2 cut(s) 590, 1244
PspPI GGNCC 5 cut(s) 510, 598, 1008, 1058, 1243
PstNI CAGNNNCTG 1 cut(s) 1277
PsuI RGATCY 1 cut(s) 782
RruI TCGCGA 1 cut(s) 876
RsaI GTAC 1 cut(s) 551
RsaNI GTAC 1 cut(s) 550
RseI CAYNNNNRTG 1 cut(s) 963
SaqAI TTAA 3 cut(s) 321, 641, 650
SatI GCNGC 4 cut(s) 414, 568, 820, 977
Sau3AI GATC 4 cut(s) 427, 491, 782, 804
Sau96I GGNCC 5 cut(s) 510, 598, 1008, 1058, 1243
SchI GAGTC 3 cut(s) 55, 363, 928
ScrFI CCNGG 3 cut(s) 1012, 1057, 1078
SduI GDGCHC 1 cut(s) 294
SfaNI GCATC 1 cut(s) 1063
SfuI TTCGAA 1 cut(s) 1203
SgrAI CRCCGGYG 1 cut(s) 1195
SinI GGWCC 3 cut(s) 598, 1008, 1243
SmiMI CAYNNNNRTG 1 cut(s) 963
SphI GCATGC 1 cut(s) 962
SspMI CTAG 2 cut(s) 222, 680
StyD4I CCNGG 3 cut(s) 1010, 1055, 1076
StyI CCWWGG 2 cut(s) 985, 1348
TaaI ACNGT 2 cut(s) 445, 1315
TaiI ACGT 4 cut(s) 45, 615, 858, 1359
TaqII GACCGA 1 cut(s) 74
TauI GCSGC 2 cut(s) 570, 822
TfiI GAWTC 1 cut(s) 554
Tru1I TTAA 3 cut(s) 321, 641, 650
Tru9I TTAA 3 cut(s) 321, 641, 650
TscAI CASTG 3 cut(s) 136, 424, 847
TseFI GTSAC 3 cut(s) 45, 766, 1309
TseI GCWGC 2 cut(s) 413, 976
Tsp45I GTSAC 3 cut(s) 45, 766, 1309
TspDTI ATGAA 6 cut(s) 180, 687, 825, 917, 1137, 1199
TspGWI ACGGA 1 cut(s) 646
TspRI CASTG 3 cut(s) 136, 424, 847
Van91I CCANNNNNTGG 2 cut(s) 582, 1083
VpaK11BI GGWCC 3 cut(s) 598, 1008, 1243
XapI RAATTY 7 cut(s) 339, 376, 646, 665, 836, 940, 1206
XbaI TCTAGA 1 cut(s) 221
XceI RCATGY 2 cut(s) 962, 1369
XcmI CCANNNNNNNNNTGG 1 cut(s) 520
XspI CTAG 2 cut(s) 222, 680
ZraI GACGTC 2 cut(s) 613, 856
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.