Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8485617.1

Orthogroup ID

OG0003205

Physical Location & Seq

Genomic Coordinates Forward (+)

1257 .. 2165

Gene Structure 909 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8485617.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

atggcagctgagttacagccgctggaggctacaatccccgccggcccaaccgccaccgccacgtcgacaccgtcacctcttataaccccaacggcgacggccgcaatcgcaaccacagcagcagcagcagcagcagcagcaacagcaacggctctacactcgggcgaaaacccgggcccccaattccaactgggccagaaacggcagcgccggcccagcgtgcggttaggcgagatcggcgaccagcccgcggccaccgtctcaatcgactcacacatgcgaagggccaagtacccctggaagctcccgaaggactctagtaaatccgtcaaggccaggtcgattacgaacctcgtgaacggccacgattcgactgagatagatgatcggaaccagaacggcgacgggggattcgagttcgggagcaggaagatcaaatcgaagcgggcggcgacgacgaagagagtccgatcgaattggatttcgaattcgaagattgacgagggaggggatagccgggaggagggggaggggtggatgagcgcagatcccgatagggatagtccggtaagggatgagagcccggtgcagtcggcggagaacgaggcgcacaattgggaggagcagaggagggttggggggaataattgggggaggggatcggagagcagggaaaacgacgccgttgaggcggataatatgccggagtcgaattggagcggagtgaggtcgtggctaatagagctgggcttgagtcggtatacgccggtgttcgagatacatgaggtggatgatgaggtgttgccgatgctgacattggaggatcttaaagatatggggataaacgccgtgggatccaggcggaaaatgtacagtgctatccagaagcttcgcaagggcttttcgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAM_1 SAM_2

Protein Analysis

302

Amino Acids

32.88

Weight (kDa)

5.85

Isoelectric Point (pI)

57.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48800 AT5G23680
fragaria_vesca	FvH4_4g22930 FvH4_5g09120 FvH4_5g09120
malus_domestica	MD04G1000300.v1.1 MD06G1133400.v1.1 MD13G1128000.v1.1 MD13G1128300.v1.1 MD14G1149800.v1.1 MD16G1128400.v1.1
prunus_persica	Prupe.5G144600_v2.0.a1 Prupe.5G144600_v2.0.a1
pyrus_communis	pycom13g11100 pycom14g12450 pycom16g10890
rosa_chinensis	RchiOBHm_Chr4g0429181 RchiOBHm_Chr7g0189071
rosa_laevigata	RLG00000004635 RLG00000007089
rosa_multiflora	Rmu_co7993242.1_g000001 Rmu_co8485617.1_g000001 Rmu_sc0004290.1_g000008 Rmu_sc0004872.1_g000001
rosa_rugosa	Rorug04G0233700 Rorug06G0496000
rosa_samantha	Rh4AG289600 Rh4BG295600 Rh4CG311100 Rh4DG292500 Rh7AG100400 Rh7BG102900 Rh7CG104400 Rh7DG102400
rosa_wichuraiana	Rw4G025090 Rw5G022550 Rw7G008680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	83
AccBSI	CCGCTC	1 cut(s)	720
AccI	GTMKAC	2 cut(s)	65, 761
AccII	CGCG	1 cut(s)	251
AclWI	GGATC	5 cut(s)	542, 667, 831, 849, 862
AcoI	YGGCCR	3 cut(s)	99, 252, 361
AcsI	RAATTY	1 cut(s)	487
AcyI	GRCGYC	1 cut(s)	681
AfaI	GTAC	2 cut(s)	293, 872
AfiI	CCNNNNNNNGG	3 cut(s)	222, 250, 523
AjiI	CACGTC	1 cut(s)	63
AjnI	CCWGG	3 cut(s)	296, 335, 857
AluBI	AGCT	4 cut(s)	8, 304, 745, 889
AluI	AGCT	4 cut(s)	8, 304, 745, 889
Alw26I	GTCTC	1 cut(s)	265
AlwI	GGATC	5 cut(s)	542, 667, 831, 849, 862
AlwNI	CAGNNNCTG	1 cut(s)	22
Ama87I	CYCGRG	2 cut(s)	160, 172
AoxI	GGCC	9 cut(s)	43, 99, 175, 193, 212, 252, 285, 333, 361
ApaI	GGGCCC	1 cut(s)	179
ApeKI	GCWGC	9 cut(s)	5, 119, 122, 125, 128, 131, 134, 137, 205
ApoI	RAATTY	1 cut(s)	487
ArsI	GACNNNNNNTTYG	2 cut(s)	395, 427
AspLEI	GCGC	3 cut(s)	210, 545, 610
AspS9I	GGNCC	6 cut(s)	44, 175, 176, 193, 213, 285
AsuC2I	CCSGG	4 cut(s)	173, 174, 518, 584
AsuHPI	GGTGA	1 cut(s)	66
AsuII	TTCGAA	2 cut(s)	485, 491
AvaI	CYCGRG	2 cut(s)	160, 172
BaeGI	GKGCMC	1 cut(s)	179
BamHI	GGATCC	1 cut(s)	854
BanII	GRGCYC	2 cut(s)	179, 584
BauI	CACGAG	1 cut(s)	353
BbvI	GCAGC	9 cut(s)	17, 131, 134, 137, 140, 143, 146, 149, 217
BceAI	ACGGC	8 cut(s)	108, 114, 165, 218, 376, 415, 668, 833
BciT130I	CCWGG	3 cut(s)	298, 337, 859
BcnI	CCSGG	4 cut(s)	173, 174, 518, 584
BcoDI	GTCTC	1 cut(s)	265
BfaI	CTAG	1 cut(s)	318
BfoI	RGCGCY	1 cut(s)	211
BglI	GCCNNNNNGGC	1 cut(s)	689
Bme1390I	CCNGG	7 cut(s)	173, 174, 298, 337, 518, 584, 859
BmeT110I	CYCGRG	2 cut(s)	160, 172
BmgBI	CACGTC	1 cut(s)	63
BmgT120I	GGNCC	6 cut(s)	44, 175, 176, 193, 213, 285
BmiI	GGNNCC	4 cut(s)	177, 178, 392, 856
BmrFI	CCNGG	7 cut(s)	173, 174, 298, 337, 518, 584, 859
BmrI	ACTGGG	1 cut(s)	200
BmsI	GCATC	1 cut(s)	798
BmuI	ACTGGG	1 cut(s)	200
BpmI	CTGGAG	1 cut(s)	44
Bpu14I	TTCGAA	2 cut(s)	485, 491
BpuEI	CTTGAG	1 cut(s)	772
BpuMI	CCSGG	4 cut(s)	173, 174, 518, 584
BsaHI	GRCGYC	1 cut(s)	681
BsaJI	CCNNGG	4 cut(s)	172, 249, 296, 849
BsaWI	WCCGGW	1 cut(s)	565
Bsc4I	CCNNNNNNNGG	3 cut(s)	222, 250, 523
Bse118I	RCCGGY	3 cut(s)	41, 210, 766
Bse1I	ACTGG	1 cut(s)	195
BseBI	CCWGG	3 cut(s)	298, 337, 859
BseDI	CCNNGG	4 cut(s)	172, 249, 296, 849
BseGI	GGATG	3 cut(s)	543, 580, 796
BseLI	CCNNNNNNNGG	3 cut(s)	222, 250, 523
BseMII	CTCAG	1 cut(s)	366
BseNI	ACTGG	1 cut(s)	195
BseRI	GAGGAG	3 cut(s)	536, 635, 643
BseSI	GKGCMC	1 cut(s)	179
BseX3I	CGGCCG	1 cut(s)	99
BseXI	GCAGC	9 cut(s)	17, 131, 134, 137, 140, 143, 146, 149, 217
BseYI	CCCAGC	2 cut(s)	215, 745
BsgI	GTGCAG	1 cut(s)	608
Bsh1236I	CGCG	1 cut(s)	251
Bsh1285I	CGRYCG	2 cut(s)	102, 473
BshFI	GGCC	9 cut(s)	45, 101, 177, 195, 214, 254, 287, 335, 363
BsiEI	CGRYCG	2 cut(s)	102, 473
BsiHKCI	CYCGRG	2 cut(s)	160, 172
BsiSI	CCGG	8 cut(s)	42, 173, 211, 517, 566, 584, 704, 767
BslI	CCNNNNNNNGG	3 cut(s)	222, 250, 523
BsmAI	GTCTC	1 cut(s)	265
BsmBI	CGTCTC	1 cut(s)	265
BsnI	GGCC	9 cut(s)	45, 101, 177, 195, 214, 254, 287, 335, 363
BsoBI	CYCGRG	2 cut(s)	160, 172
Bsp119I	TTCGAA	2 cut(s)	485, 491
Bsp120I	GGGCCC	1 cut(s)	175
Bsp1286I	GDGCHC	2 cut(s)	179, 584
Bsp1407I	TGTACA	1 cut(s)	870
Bsp143I	GATC	8 cut(s)	234, 385, 432, 470, 547, 659, 823, 854
BspANI	GGCC	9 cut(s)	45, 101, 177, 195, 214, 254, 287, 335, 363
BspCNI	CTCAG	1 cut(s)	367
BspFNI	CGCG	1 cut(s)	251
BspLI	GGNNCC	4 cut(s)	177, 178, 392, 856
BspPI	GGATC	5 cut(s)	542, 667, 831, 849, 862
BspT104I	TTCGAA	2 cut(s)	485, 491
BsrBI	CCGCTC	1 cut(s)	720
BsrFI	RCCGGY	3 cut(s)	41, 210, 766
BsrGI	TGTACA	1 cut(s)	870
BsrI	ACTGG	1 cut(s)	195
BssAI	RCCGGY	3 cut(s)	41, 210, 766
BssECI	CCNNGG	4 cut(s)	172, 249, 296, 849
BssMI	GATC	8 cut(s)	234, 385, 432, 470, 547, 659, 823, 854
BssNAI	GTATAC	1 cut(s)	762
BssNI	GRCGYC	1 cut(s)	681
BssSI	CACGAG	1 cut(s)	353
Bst1107I	GTATAC	1 cut(s)	762
Bst2BI	CACGAG	1 cut(s)	353
Bst2UI	CCWGG	3 cut(s)	298, 337, 859
Bst4CI	ACNGT	3 cut(s)	72, 259, 875
Bst6I	CTCTTC	1 cut(s)	455
BstACI	GRCGYC	1 cut(s)	681
BstAUI	TGTACA	1 cut(s)	870
BstBI	TTCGAA	2 cut(s)	485, 491
BstC8I	GCNNGC	5 cut(s)	43, 212, 221, 249, 447
BstDEI	CTNAG	2 cut(s)	9, 375
BstDSI	CCRYGG	2 cut(s)	249, 849
BstF5I	GGATG	3 cut(s)	543, 580, 796
BstFNI	CGCG	1 cut(s)	251
BstH2I	RGCGCY	1 cut(s)	211
BstHHI	GCGC	3 cut(s)	210, 545, 610
BstKTI	GATC	8 cut(s)	237, 388, 435, 473, 550, 662, 826, 857
BstMAI	GTCTC	1 cut(s)	265
BstMBI	GATC	8 cut(s)	234, 385, 432, 470, 547, 659, 823, 854
BstMCI	CGRYCG	2 cut(s)	102, 473
BstNI	CCWGG	3 cut(s)	298, 337, 859
BstNSI	RCATGY	1 cut(s)	280
BstSCI	CCNGG	7 cut(s)	171, 172, 296, 335, 516, 582, 857
BstSLI	GKGCMC	1 cut(s)	179
BstUI	CGCG	1 cut(s)	251
BstV1I	GCAGC	9 cut(s)	17, 131, 134, 137, 140, 143, 146, 149, 217
BstX2I	RGATCY	3 cut(s)	547, 823, 854
BstYI	RGATCY	3 cut(s)	547, 823, 854
BstZ17I	GTATAC	1 cut(s)	762
BstZI	CGGCCG	1 cut(s)	99
BsuRI	GGCC	9 cut(s)	45, 101, 177, 195, 214, 254, 287, 335, 363
BtgI	CCRYGG	2 cut(s)	249, 849
BtrI	CACGTC	1 cut(s)	63
BtsCI	GGATG	3 cut(s)	543, 580, 796
BtsIMutI	CAGTG	1 cut(s)	880
Cac8I	GCNNGC	5 cut(s)	43, 212, 221, 249, 447
CaiI	CAGNNNCTG	1 cut(s)	22
CfoI	GCGC	3 cut(s)	210, 545, 610
Cfr10I	RCCGGY	3 cut(s)	41, 210, 766
Cfr13I	GGNCC	6 cut(s)	44, 175, 176, 193, 213, 285
Cfr42I	CCGCGG	1 cut(s)	252
Cfr9I	CCCGGG	1 cut(s)	172
CseI	GACGC	1 cut(s)	689
Csp6I	GTAC	2 cut(s)	292, 871
CviAII	CATG	2 cut(s)	277, 782
CviQI	GTAC	2 cut(s)	292, 871
DdeI	CTNAG	2 cut(s)	9, 375
DpnI	GATC	8 cut(s)	236, 387, 434, 472, 549, 661, 825, 856
DpnII	GATC	8 cut(s)	234, 385, 432, 470, 547, 659, 823, 854
EaeI	YGGCCR	3 cut(s)	99, 252, 361
EagI	CGGCCG	1 cut(s)	99
Eam1104I	CTCTTC	1 cut(s)	455
EarI	CTCTTC	1 cut(s)	455
EciI	GGCGGA	3 cut(s)	611, 707, 877
EclXI	CGGCCG	1 cut(s)	99
Eco24I	GRGCYC	2 cut(s)	179, 584
Eco52I	CGGCCG	1 cut(s)	99
Eco88I	CYCGRG	2 cut(s)	160, 172
EcoO109I	RGGNCCY	1 cut(s)	176
EcoRI	GAATTC	1 cut(s)	487
EcoRII	CCWGG	3 cut(s)	296, 335, 857
EcoT38I	GRGCYC	2 cut(s)	179, 584
Esp3I	CGTCTC	1 cut(s)	265
FaeI	CATG	2 cut(s)	280, 785
FaiI	YATR	6 cut(s)	83, 278, 701, 762, 783, 836
FatI	CATG	2 cut(s)	276, 781
FauI	CCCGC	3 cut(s)	46, 256, 438
FblI	GTMKAC	2 cut(s)	65, 761
FokI	GGATG	3 cut(s)	550, 587, 803
FriOI	GRGCYC	2 cut(s)	179, 584
FspBI	CTAG	1 cut(s)	318
GlaI	GCGC	3 cut(s)	209, 544, 609
GsaI	CCCAGC	2 cut(s)	219, 749
GsuI	CTGGAG	1 cut(s)	44
HaeII	RGCGCY	1 cut(s)	211
HaeIII	GGCC	9 cut(s)	45, 101, 177, 195, 214, 254, 287, 335, 363
HapII	CCGG	8 cut(s)	42, 173, 211, 517, 566, 584, 704, 767
HgaI	GACGC	1 cut(s)	689
HhaI	GCGC	3 cut(s)	210, 545, 610
Hin1I	GRCGYC	1 cut(s)	681
Hin1II	CATG	2 cut(s)	280, 785
Hin6I	GCGC	3 cut(s)	208, 543, 608
HinP1I	GCGC	3 cut(s)	208, 543, 608
HincII	GTYRAC	1 cut(s)	66
HindII	GTYRAC	1 cut(s)	66
HindIII	AAGCTT	1 cut(s)	887
HinfI	GANTC	7 cut(s)	269, 314, 368, 411, 465, 707, 754
HpaII	CCGG	8 cut(s)	42, 173, 211, 517, 566, 584, 704, 767
HphI	GGTGA	1 cut(s)	66
Hpy166II	GTNNAC	3 cut(s)	66, 358, 762
Hpy188I	TCNGA	3 cut(s)	390, 470, 664
Hpy188III	TCNNGA	7 cut(s)	307, 355, 421, 551, 775, 883, 906
Hpy8I	GTNNAC	3 cut(s)	66, 358, 762
Hpy99I	CGWCG	6 cut(s)	67, 100, 407, 457, 460, 683
HpyAV	CCTTC	2 cut(s)	276, 304
HpyCH4III	ACNGT	3 cut(s)	72, 259, 875
HpyCH4IV	ACGT	1 cut(s)	62
HpyCH4V	TGCA	1 cut(s)	589
HpyF3I	CTNAG	2 cut(s)	9, 375
HpySE526I	ACGT	1 cut(s)	62
Hsp92I	GRCGYC	1 cut(s)	681
Hsp92II	CATG	2 cut(s)	280, 785
HspAI	GCGC	3 cut(s)	208, 543, 608
KroI	GCCGGC	2 cut(s)	41, 210
KroNI	GCCGGC	2 cut(s)	43, 212
KspI	CCGCGG	1 cut(s)	252
Kzo9I	GATC	8 cut(s)	234, 385, 432, 470, 547, 659, 823, 854
LmnI	GCTCC	4 cut(s)	309, 423, 622, 717
Lsp1109I	GCAGC	9 cut(s)	17, 131, 134, 137, 140, 143, 146, 149, 217
LweI	GCATC	1 cut(s)	798
MaeI	CTAG	1 cut(s)	318
MaeII	ACGT	1 cut(s)	62
MaeIII	GTNAC	2 cut(s)	12, 72
MalI	GATC	8 cut(s)	236, 387, 434, 472, 549, 661, 825, 856
MbiI	CCGCTC	1 cut(s)	720
MboI	GATC	8 cut(s)	234, 385, 432, 470, 547, 659, 823, 854
MboII	GAAGA	3 cut(s)	442, 472, 505
MfeI	CAATTG	1 cut(s)	613
MflI	RGATCY	3 cut(s)	547, 823, 854
MhlI	GDGCHC	2 cut(s)	179, 584
MluCI	AATT	6 cut(s)	182, 475, 487, 613, 646, 712
MlyI	GAGTC	5 cut(s)	263, 308, 474, 716, 763
MmeI	TCCRAC	1 cut(s)	211
MroNI	GCCGGC	2 cut(s)	41, 210
MseI	TTAA	1 cut(s)	828
MspA1I	CMGCKG	3 cut(s)	8, 22, 251
MspI	CCGG	8 cut(s)	42, 173, 211, 517, 566, 584, 704, 767
MspR9I	CCNGG	7 cut(s)	173, 174, 298, 337, 518, 584, 859
MunI	CAATTG	1 cut(s)	613
MvaI	CCWGG	3 cut(s)	298, 337, 859
MvnI	CGCG	1 cut(s)	251
NaeI	GCCGGC	2 cut(s)	43, 212
NciI	CCSGG	4 cut(s)	173, 174, 518, 584
NdeII	GATC	8 cut(s)	234, 385, 432, 470, 547, 659, 823, 854
NgoMIV	GCCGGC	2 cut(s)	41, 210
NlaIII	CATG	2 cut(s)	280, 785
NlaIV	GGNNCC	4 cut(s)	177, 178, 392, 856
NmuCI	GTSAC	1 cut(s)	72
NspI	RCATGY	1 cut(s)	280
NspV	TTCGAA	2 cut(s)	485, 491
PcsI	WCGNNNNNNNCGW	2 cut(s)	68, 411
PdiI	GCCGGC	2 cut(s)	43, 212
PfeI	GAWTC	2 cut(s)	368, 411
PflFI	GACNNNGTC	1 cut(s)	70
Ple19I	CGATCG	1 cut(s)	473
PleI	GAGTC	5 cut(s)	263, 308, 473, 715, 762
PpsI	GAGTC	5 cut(s)	263, 308, 473, 715, 762
PsiI	TTATAA	1 cut(s)	83
Psp6I	CCWGG	3 cut(s)	296, 335, 857
PspFI	CCCAGC	2 cut(s)	215, 745
PspGI	CCWGG	3 cut(s)	296, 335, 857
PspN4I	GGNNCC	4 cut(s)	177, 178, 392, 856
PspOMI	GGGCCC	1 cut(s)	175
PspPI	GGNCC	6 cut(s)	44, 175, 176, 193, 213, 285
PstNI	CAGNNNCTG	1 cut(s)	22
PsuI	RGATCY	3 cut(s)	547, 823, 854
PsyI	GACNNNGTC	1 cut(s)	70
PvuI	CGATCG	1 cut(s)	473
PvuII	CAGCTG	1 cut(s)	8
RsaI	GTAC	2 cut(s)	293, 872
RsaNI	GTAC	2 cut(s)	292, 871
SacII	CCGCGG	1 cut(s)	252
SalI	GTCGAC	1 cut(s)	64
SaqAI	TTAA	1 cut(s)	828
Sau3AI	GATC	8 cut(s)	234, 385, 432, 470, 547, 659, 823, 854
Sau96I	GGNCC	6 cut(s)	44, 175, 176, 193, 213, 285
SchI	GAGTC	5 cut(s)	263, 308, 474, 716, 763
ScrFI	CCNGG	7 cut(s)	173, 174, 298, 337, 518, 584, 859
SduI	GDGCHC	2 cut(s)	179, 584
SfaNI	GCATC	1 cut(s)	798
Sfr303I	CCGCGG	1 cut(s)	252
SfuI	TTCGAA	2 cut(s)	485, 491
SgrAI	CRCCGGYG	1 cut(s)	766
SgrBI	CCGCGG	1 cut(s)	252
SmaI	CCCGGG	1 cut(s)	174
SmlI	CTYRAG	1 cut(s)	751
SmoI	CTYRAG	1 cut(s)	751
Sse9I	AATT	6 cut(s)	182, 475, 487, 613, 646, 712
SspMI	CTAG	1 cut(s)	318
StyD4I	CCNGG	7 cut(s)	171, 172, 296, 335, 516, 582, 857
TaaI	ACNGT	3 cut(s)	72, 259, 875
TaiI	ACGT	1 cut(s)	65
TasI	AATT	6 cut(s)	182, 475, 487, 613, 646, 712
TatI	WGTACW	1 cut(s)	870
TauI	GCSGC	4 cut(s)	22, 104, 254, 452
TfiI	GAWTC	2 cut(s)	368, 411
Tru1I	TTAA	1 cut(s)	828
Tru9I	TTAA	1 cut(s)	828
TscAI	CASTG	1 cut(s)	880
TseFI	GTSAC	1 cut(s)	72
TseI	GCWGC	9 cut(s)	5, 119, 122, 125, 128, 131, 134, 137, 205
Tsp45I	GTSAC	1 cut(s)	72
TspGWI	ACGGA	1 cut(s)	316
TspMI	CCCGGG	1 cut(s)	172
TspRI	CASTG	1 cut(s)	880
Tth111I	GACNNNGTC	1 cut(s)	70
XapI	RAATTY	1 cut(s)	487
XceI	RCATGY	1 cut(s)	280
XmaI	CCCGGG	1 cut(s)	172
XmiI	GTMKAC	2 cut(s)	65, 761
XspI	CTAG	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.