Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0003205

Physical Location & Seq

Genomic Coordinates Forward (+)

7918140 .. 7920524

Gene Structure 2385 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG104400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGCGGAGATACAGCCACCGGAGATCAACGGCGGGCAATTCATGATGGGTTCGTCGGAGACGGTGGGGGCGAAGCGGCAGCGGAGGCCCAGCGTCCGATTGGGCGAGATCGGAGGAGACCAGCCGTACGATTCGAACCCGCGGCGGGCGACGAAGCAGTGGAGGCTACCTCCGATGGACCACCACCACCGGAACAAGGAGTCGAGTAAGTCGTCAAAGACTCGGCCTTTGGTGAATTTGAGCTCCGGCGGGGAGTTCGATGAAACCCTAGAGCGGGAGGAGAGAGAGGGCAACCTCGATAGTGTCGCCATTGGGAGCTGGAAGGTGAAAGAGACCAAGAAAAGAGCTTCGAGCGCCACGAAGAGGGTCAGATCCAATTGGGTCGCGGCCAAGATTGACGAGGGCGGCGGCGGCGGCGATGAGAAGTTCAGCGGCGGCGAGGATGGGGAAGATGGGTACCGGGAATTCGAACCCGAAGAGTCGGAAAGCCCCTTGAAAGAGCAGAGCCCAATTCATTCCTCGGAGAATTTGGAAAGAGAGGTGCTTTACCATGGGAGTAGGAGACCAATTAGGACTAGGGTTTTGGATCATGATGGTGTTGAGCTATCCGGGCCGTCGGAGAATGATGCCAGGGAGTGGAATGGGAGAGGGACTAGTGGGGACAGGAATGGGAATGAAGGGAGAGTGAGGTGTGGGGAAGATGGGGTTAGGGTTTGGCTCAATGGCTTAGGGTTGAGTCGGTATGCCCCAGTGTTCGAAATTCATGAGGTGGATGATGAAGTGTTGCCAATGTTAACTTTGGAGGACCTCAAGGACATGGGGATAAATGCGGTCGGGTCCAGAAGGAAAATGTACTGTGCTATTCAGAAGCTTGGAAAGGGTTTTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0007275 GO:0007368 GO:0007389 GO:0007507 GO:0008150 GO:0009799 GO:0009855 GO:0009966 GO:0009968 GO:0010646 GO:0010648 GO:0023051 GO:0023057 GO:0030111 GO:0030178 GO:0032501 GO:0032502 GO:0048513 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0060828 GO:0065007 GO:0072359 GO:0090090 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAM_1 SAM_2

Protein Analysis

296

Amino Acids

32.96

Weight (kDa)

5.79

Isoelectric Point (pI)

57.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAM_1	PF00536	235 - 291	3.2e-13	SAM domain (Sterile alpha motif)
SAM_2	PF07647	239 - 291	1.2e-11	SAM domain (Sterile alpha motif)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48800 AT5G23680
fragaria_vesca	FvH4_4g22930 FvH4_5g09120 FvH4_5g09120
malus_domestica	MD04G1000300.v1.1 MD06G1133400.v1.1 MD13G1128000.v1.1 MD13G1128300.v1.1 MD14G1149800.v1.1 MD16G1128400.v1.1
prunus_persica	Prupe.5G144600_v2.0.a1 Prupe.5G144600_v2.0.a1
pyrus_communis	pycom13g11100 pycom14g12450 pycom16g10890
rosa_chinensis	RchiOBHm_Chr4g0429181 RchiOBHm_Chr7g0189071
rosa_laevigata	RLG00000004635 RLG00000007089
rosa_multiflora	Rmu_co7993242.1_g000001 Rmu_co8485617.1_g000001 Rmu_sc0004290.1_g000008 Rmu_sc0004872.1_g000001
rosa_rugosa	Rorug04G0233700 Rorug06G0496000
rosa_samantha	Rh4AG289600 Rh4BG295600 Rh4CG311100 Rh4DG292500 Rh7AG100400 Rh7BG102900 Rh7CG104400 Rh7DG102400
rosa_wichuraiana	Rw4G025090 Rw5G022550 Rw7G008680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	456
AccB1I	GGYRCC	1 cut(s)	456
AccB7I	CCANNNNNTGG	1 cut(s)	636
AccBSI	CCGCTC	1 cut(s)	274
AccII	CGCG	2 cut(s)	142, 386
AclWI	GGATC	2 cut(s)	366, 594
AcoI	YGGCCR	1 cut(s)	387
AcsI	RAATTY	4 cut(s)	235, 464, 526, 759
AfaI	GTAC	3 cut(s)	128, 458, 854
AfiI	CCNNNNNNNGG	6 cut(s)	145, 196, 273, 274, 363, 636
AgsI	TTSAA	1 cut(s)	496
AhlI	ACTAGT	1 cut(s)	653
AjnI	CCWGG	1 cut(s)	629
AluBI	AGCT	5 cut(s)	243, 318, 347, 604, 871
AluI	AGCT	5 cut(s)	243, 318, 347, 604, 871
Alw21I	GWGCWC	1 cut(s)	245
Alw26I	GTCTC	4 cut(s)	53, 111, 326, 556
AlwI	GGATC	2 cut(s)	366, 594
AoxI	GGCC	4 cut(s)	86, 224, 387, 611
ApeKI	GCWGC	1 cut(s)	79
ApoI	RAATTY	4 cut(s)	235, 464, 526, 759
ArsI	GACNNNNNNTTYG	4 cut(s)	211, 243, 565, 597
Asp718I	GGTACC	1 cut(s)	456
AspLEI	GCGC	1 cut(s)	356
AspS9I	GGNCC	5 cut(s)	87, 178, 611, 805, 837
AsuC2I	CCSGG	2 cut(s)	461, 610
AsuHPI	GGTGA	2 cut(s)	244, 337
AsuII	TTCGAA	3 cut(s)	134, 468, 756
AvaII	GGWCC	3 cut(s)	178, 805, 837
BanI	GGYRCC	1 cut(s)	456
BanII	GRGCYC	2 cut(s)	245, 509
Bbv12I	GWGCWC	1 cut(s)	245
BbvI	GCAGC	1 cut(s)	91
BccI	CCATC	6 cut(s)	40, 169, 437, 446, 587, 695
BceAI	ACGGC	3 cut(s)	46, 109, 598
BciT130I	CCWGG	1 cut(s)	631
BcnI	CCSGG	2 cut(s)	461, 610
BcoDI	GTCTC	4 cut(s)	53, 111, 326, 556
BcuI	ACTAGT	1 cut(s)	653
BfaI	CTAG	3 cut(s)	269, 576, 654
BfoI	RGCGCY	1 cut(s)	357
Bme1390I	CCNGG	3 cut(s)	461, 610, 631
Bme18I	GGWCC	3 cut(s)	178, 805, 837
BmgT120I	GGNCC	5 cut(s)	87, 178, 611, 805, 837
BmiI	GGNNCC	2 cut(s)	458, 838
BmrFI	CCNGG	3 cut(s)	461, 610, 631
BmrI	ACTGGG	1 cut(s)	743
BmsI	GCATC	1 cut(s)	616
BmuI	ACTGGG	1 cut(s)	743
BplI	GAGNNNNNCTC	2 cut(s)	154, 186
Bpu10I	CCTNAGC	1 cut(s)	727
Bpu14I	TTCGAA	3 cut(s)	134, 468, 756
BpuEI	CTTGAG	1 cut(s)	794
BpuMI	CCSGG	2 cut(s)	461, 610
BsaI	GGTCTC	3 cut(s)	111, 326, 556
BsaJI	CCNNGG	4 cut(s)	140, 519, 550, 630
BsaWI	WCCGGW	2 cut(s)	19, 189
Bsc4I	CCNNNNNNNGG	6 cut(s)	145, 196, 273, 274, 363, 636
Bse1I	ACTGG	1 cut(s)	749
BseBI	CCWGG	1 cut(s)	631
BseDI	CCNNGG	4 cut(s)	140, 519, 550, 630
BseGI	GGATG	2 cut(s)	448, 778
BseLI	CCNNNNNNNGG	6 cut(s)	145, 196, 273, 274, 363, 636
BseNI	ACTGG	1 cut(s)	749
BseRI	GAGGAG	2 cut(s)	129, 293
BseXI	GCAGC	1 cut(s)	91
BseYI	CCCAGC	1 cut(s)	89
Bsh1236I	CGCG	2 cut(s)	142, 386
Bsh1285I	CGRYCG	1 cut(s)	834
BshFI	GGCC	4 cut(s)	88, 226, 389, 613
BshNI	GGYRCC	1 cut(s)	456
BsiEI	CGRYCG	1 cut(s)	834
BsiHKAI	GWGCWC	1 cut(s)	245
BsiSI	CCGG	5 cut(s)	20, 190, 246, 460, 609
BsiWI	CGTACG	1 cut(s)	126
BslFI	GGGAC	2 cut(s)	664, 674
BslI	CCNNNNNNNGG	6 cut(s)	145, 196, 273, 274, 363, 636
BsmAI	GTCTC	4 cut(s)	53, 111, 326, 556
BsmBI	CGTCTC	1 cut(s)	53
BsmFI	GGGAC	2 cut(s)	664, 674
BsnI	GGCC	4 cut(s)	88, 226, 389, 613
Bso31I	GGTCTC	3 cut(s)	111, 326, 556
Bsp119I	TTCGAA	3 cut(s)	134, 468, 756
Bsp1286I	GDGCHC	2 cut(s)	245, 509
Bsp143I	GATC	4 cut(s)	24, 108, 371, 586
Bsp19I	CCATGG	1 cut(s)	550
BspANI	GGCC	4 cut(s)	88, 226, 389, 613
BspFNI	CGCG	2 cut(s)	142, 386
BspHI	TCATGA	3 cut(s)	42, 589, 763
BspLI	GGNNCC	2 cut(s)	458, 838
BspPI	GGATC	2 cut(s)	366, 594
BspT104I	TTCGAA	3 cut(s)	134, 468, 756
BspT107I	GGYRCC	1 cut(s)	456
BspTNI	GGTCTC	3 cut(s)	111, 326, 556
BsrBI	CCGCTC	1 cut(s)	274
BsrI	ACTGG	1 cut(s)	749
BssECI	CCNNGG	4 cut(s)	140, 519, 550, 630
BssMI	GATC	4 cut(s)	24, 108, 371, 586
BssT1I	CCWWGG	1 cut(s)	550
Bst2UI	CCWGG	1 cut(s)	631
Bst4CI	ACNGT	2 cut(s)	64, 857
Bst6I	CTCTTC	2 cut(s)	356, 471
BstBI	TTCGAA	3 cut(s)	134, 468, 756
BstC8I	GCNNGC	2 cut(s)	35, 147
BstDEI	CTNAG	1 cut(s)	727
BstDSI	CCRYGG	2 cut(s)	140, 550
BstF5I	GGATG	2 cut(s)	448, 778
BstFNI	CGCG	2 cut(s)	142, 386
BstH2I	RGCGCY	1 cut(s)	357
BstHHI	GCGC	1 cut(s)	356
BstKTI	GATC	4 cut(s)	27, 111, 374, 589
BstMAI	GTCTC	4 cut(s)	53, 111, 326, 556
BstMBI	GATC	4 cut(s)	24, 108, 371, 586
BstMCI	CGRYCG	1 cut(s)	834
BstMWI	GCNNNNNNNGC	6 cut(s)	85, 163, 353, 411, 414, 610
BstNI	CCWGG	1 cut(s)	631
BstSCI	CCNGG	3 cut(s)	459, 608, 629
BstUI	CGCG	2 cut(s)	142, 386
BstV1I	GCAGC	1 cut(s)	91
BstX2I	RGATCY	1 cut(s)	371
BstYI	RGATCY	1 cut(s)	371
BsuRI	GGCC	4 cut(s)	88, 226, 389, 613
BtgI	CCRYGG	2 cut(s)	140, 550
BtgZI	GCGATG	1 cut(s)	432
BtsCI	GGATG	2 cut(s)	448, 778
BtsI	GCAGTG	1 cut(s)	164
BtsIMutI	CAGTG	2 cut(s)	164, 756
Cac8I	GCNNGC	2 cut(s)	35, 147
CciI	TCATGA	3 cut(s)	42, 589, 763
CfoI	GCGC	1 cut(s)	356
Cfr13I	GGNCC	5 cut(s)	87, 178, 611, 805, 837
Cfr42I	CCGCGG	1 cut(s)	143
CseI	GACGC	1 cut(s)	82
Csp6I	GTAC	3 cut(s)	127, 457, 853
CviAII	CATG	5 cut(s)	43, 551, 590, 764, 817
CviQI	GTAC	3 cut(s)	127, 457, 853
DdeI	CTNAG	1 cut(s)	727
DpnI	GATC	4 cut(s)	26, 110, 373, 588
DpnII	GATC	4 cut(s)	24, 108, 371, 586
EaeI	YGGCCR	1 cut(s)	387
Eam1104I	CTCTTC	2 cut(s)	356, 471
EarI	CTCTTC	2 cut(s)	356, 471
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	243
Eco130I	CCWWGG	1 cut(s)	550
Eco24I	GRGCYC	2 cut(s)	245, 509
Eco31I	GGTCTC	3 cut(s)	111, 326, 556
Eco47I	GGWCC	3 cut(s)	178, 805, 837
Eco53kI	GAGCTC	1 cut(s)	243
EcoICRI	GAGCTC	1 cut(s)	243
EcoO109I	RGGNCCY	1 cut(s)	805
EcoRI	GAATTC	1 cut(s)	464
EcoRII	CCWGG	1 cut(s)	629
EcoT14I	CCWWGG	1 cut(s)	550
EcoT38I	GRGCYC	2 cut(s)	245, 509
ErhI	CCWWGG	1 cut(s)	550
Esp3I	CGTCTC	1 cut(s)	53
FaeI	CATG	5 cut(s)	46, 554, 593, 767, 820
FaiI	YATR	6 cut(s)	44, 552, 591, 744, 765, 818
FaqI	GGGAC	2 cut(s)	664, 674
FatI	CATG	5 cut(s)	42, 550, 589, 763, 816
FauI	CCCGC	5 cut(s)	26, 138, 147, 242, 267
FokI	GGATG	2 cut(s)	455, 785
FriOI	GRGCYC	2 cut(s)	245, 509
FspBI	CTAG	3 cut(s)	269, 576, 654
GlaI	GCGC	1 cut(s)	355
GsaI	CCCAGC	1 cut(s)	93
HaeII	RGCGCY	1 cut(s)	357
HaeIII	GGCC	4 cut(s)	88, 226, 389, 613
HapII	CCGG	5 cut(s)	20, 190, 246, 460, 609
HgaI	GACGC	1 cut(s)	82
HhaI	GCGC	1 cut(s)	356
Hin1II	CATG	5 cut(s)	46, 554, 593, 767, 820
Hin6I	GCGC	1 cut(s)	354
HinP1I	GCGC	1 cut(s)	354
HincII	GTYRAC	1 cut(s)	795
HindII	GTYRAC	1 cut(s)	795
HindIII	AAGCTT	1 cut(s)	869
HinfI	GANTC	5 cut(s)	131, 200, 220, 479, 736
HpaI	GTTAAC	1 cut(s)	795
HpaII	CCGG	5 cut(s)	20, 190, 246, 460, 609
HphI	GGTGA	2 cut(s)	244, 337
Hpy166II	GTNNAC	1 cut(s)	795
Hpy188I	TCNGA	9 cut(s)	58, 98, 113, 174, 371, 484, 523, 619, 867
Hpy188III	TCNNGA	5 cut(s)	43, 590, 764, 840, 888
Hpy8I	GTNNAC	1 cut(s)	795
Hpy99I	CGWCG	3 cut(s)	58, 154, 619
HpyAV	CCTTC	3 cut(s)	316, 671, 837
HpyCH4III	ACNGT	2 cut(s)	64, 857
HpyF10VI	GCNNNNNNNGC	6 cut(s)	85, 163, 353, 411, 414, 610
HpyF3I	CTNAG	1 cut(s)	727
Hsp92II	CATG	5 cut(s)	46, 554, 593, 767, 820
HspAI	GCGC	1 cut(s)	354
KpnI	GGTACC	1 cut(s)	460
KspAI	GTTAAC	1 cut(s)	795
KspI	CCGCGG	1 cut(s)	143
Kzo9I	GATC	4 cut(s)	24, 108, 371, 586
LmnI	GCTCC	2 cut(s)	248, 315
Lsp1109I	GCAGC	1 cut(s)	91
LweI	GCATC	1 cut(s)	616
MaeI	CTAG	3 cut(s)	269, 576, 654
MalI	GATC	4 cut(s)	26, 110, 373, 588
MbiI	CCGCTC	1 cut(s)	274
MboI	GATC	4 cut(s)	24, 108, 371, 586
MboII	GAAGA	4 cut(s)	373, 461, 488, 710
MfeI	CAATTG	1 cut(s)	376
MflI	RGATCY	1 cut(s)	371
MhlI	GDGCHC	2 cut(s)	245, 509
MluCI	AATT	8 cut(s)	38, 235, 376, 464, 510, 526, 567, 759
MlyI	GAGTC	4 cut(s)	209, 214, 488, 745
MmeI	TCCRAC	3 cut(s)	36, 462, 597
MseI	TTAA	1 cut(s)	794
MslI	CAYNNNNRTG	1 cut(s)	594
MspA1I	CMGCKG	3 cut(s)	82, 142, 432
MspI	CCGG	5 cut(s)	20, 190, 246, 460, 609
MspR9I	CCNGG	3 cut(s)	461, 610, 631
MunI	CAATTG	1 cut(s)	376
MvaI	CCWGG	1 cut(s)	631
MvnI	CGCG	2 cut(s)	142, 386
MwoI	GCNNNNNNNGC	6 cut(s)	85, 163, 353, 411, 414, 610
NciI	CCSGG	2 cut(s)	461, 610
NcoI	CCATGG	1 cut(s)	550
NdeII	GATC	4 cut(s)	24, 108, 371, 586
NlaIII	CATG	5 cut(s)	46, 554, 593, 767, 820
NlaIV	GGNNCC	2 cut(s)	458, 838
NmeAIII	GCCGAG	1 cut(s)	202
NspV	TTCGAA	3 cut(s)	134, 468, 756
PagI	TCATGA	3 cut(s)	42, 589, 763
PcsI	WCGNNNNNNNCGW	3 cut(s)	68, 209, 356
PfeI	GAWTC	1 cut(s)	131
Pfl23II	CGTACG	1 cut(s)	126
PflMI	CCANNNNNTGG	1 cut(s)	636
PleI	GAGTC	4 cut(s)	208, 214, 487, 744
PpsI	GAGTC	4 cut(s)	208, 214, 487, 744
PpuMI	RGGWCCY	1 cut(s)	805
Psp124BI	GAGCTC	1 cut(s)	245
Psp5II	RGGWCCY	1 cut(s)	805
Psp6I	CCWGG	1 cut(s)	629
PspFI	CCCAGC	1 cut(s)	89
PspGI	CCWGG	1 cut(s)	629
PspLI	CGTACG	1 cut(s)	126
PspN4I	GGNNCC	2 cut(s)	458, 838
PspPI	GGNCC	5 cut(s)	87, 178, 611, 805, 837
PspPPI	RGGWCCY	1 cut(s)	805
PsuI	RGATCY	1 cut(s)	371
RsaI	GTAC	3 cut(s)	128, 458, 854
RsaNI	GTAC	3 cut(s)	127, 457, 853
RseI	CAYNNNNRTG	1 cut(s)	594
SacI	GAGCTC	1 cut(s)	245
SacII	CCGCGG	1 cut(s)	143
SaqAI	TTAA	1 cut(s)	794
Sau3AI	GATC	4 cut(s)	24, 108, 371, 586
Sau96I	GGNCC	5 cut(s)	87, 178, 611, 805, 837
SchI	GAGTC	4 cut(s)	209, 214, 488, 745
ScrFI	CCNGG	3 cut(s)	461, 610, 631
SduI	GDGCHC	2 cut(s)	245, 509
SfaNI	GCATC	1 cut(s)	616
Sfr303I	CCGCGG	1 cut(s)	143
SfuI	TTCGAA	3 cut(s)	134, 468, 756
SgrBI	CCGCGG	1 cut(s)	143
SinI	GGWCC	3 cut(s)	178, 805, 837
SmiMI	CAYNNNNRTG	1 cut(s)	594
SmlI	CTYRAG	1 cut(s)	809
SmoI	CTYRAG	1 cut(s)	809
SpeI	ACTAGT	1 cut(s)	653
Sse9I	AATT	8 cut(s)	38, 235, 376, 464, 510, 526, 567, 759
SspMI	CTAG	3 cut(s)	269, 576, 654
SstI	GAGCTC	1 cut(s)	245
StyD4I	CCNGG	3 cut(s)	459, 608, 629
StyI	CCWWGG	1 cut(s)	550
TaaI	ACNGT	2 cut(s)	64, 857
TaqI	TCGA	7 cut(s)	134, 203, 258, 297, 350, 468, 756
TasI	AATT	8 cut(s)	38, 235, 376, 464, 510, 526, 567, 759
TatI	WGTACW	1 cut(s)	852
TauI	GCSGC	9 cut(s)	79, 145, 389, 408, 411, 414, 417, 435, 438
TfiI	GAWTC	1 cut(s)	131
Tru1I	TTAA	1 cut(s)	794
Tru9I	TTAA	1 cut(s)	794
TscAI	CASTG	2 cut(s)	164, 756
TseI	GCWGC	1 cut(s)	79
TspDTI	ATGAA	6 cut(s)	31, 276, 503, 690, 752, 792
TspRI	CASTG	2 cut(s)	164, 756
Van91I	CCANNNNNTGG	1 cut(s)	636
VpaK11BI	GGWCC	3 cut(s)	178, 805, 837
XapI	RAATTY	4 cut(s)	235, 464, 526, 759
XcmI	CCANNNNNNNNNTGG	1 cut(s)	97
XspI	CTAG	3 cut(s)	269, 576, 654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.