Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003205

Physical Location & Seq

Genomic Coordinates Forward (+)

8464868 .. 8467141

Gene Structure 2274 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16886

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGCGGAGATACAGCCACCGGAGATCAACGGCGGGCAATTCATGATGGGTTCGTCGGAGACGGTGGGGGCGAAGCGGCAGCGGAGGCCCAGCGTCCGATTGGGCGAGATCGGAGGAGACCAGCCGTACGATTCGAACCCGCGGCGGGCGACGAAGCAGTGGAGGCTACCTCCGATGGACCACCACCACCACCGGAACAAGGAGTCGAGTAAGTCGTCAAAGACTCGGCCTTTGGTGAATTTGAGCTCCGGCGGGGAGTTCGATGAAACCCTAGAGCGGGAGGAGAGAGAGGGCAACCTCGATAGTGTCGCCATTGGGAGCTGGAAGGTGAAAGAGACCAAGAAAAGAGCTTCGAGCGCCACGAAGAGGGTCAGATCCAATTGGGTCGCGGCCAAGATTGACGAGGGCGGCGGCGGCGGCGGCGATGAGAAGTTCAGCGGCGGCGAGGATGGGGAAGATGGGTACCGGGAATTCGAACCCGAAGAGTCGGAAAGCCCCTTGAAAGAGCAGAGCCCAATTCATTCCTCGGAGAATTTGGAAAGAGAGGTGCTTTACCATGGGAATAGGAGACCAATTAGGACTAGGGTTTTGGATCATGATGGTGTTGAGCTATCCGGGCCGTCGGAGAATGATGCCAGGGAGTGGAATGGGAGAGGGACTAGTGGGGACAGGAATGGGAATGAAGGGAGAGTGAGGTGTGGGGAAGATGGGGTTAGGGTTTGGCTCAATGGCTTAGGGTTGAGTCGGTATGCCCCAGTGTTCGAAATTCATGAGGTGGATGATGAAGTGTTGCCAATGCTAACTTTGGAGGACCTCAAGGACATGGGGATAAATGCGGTCGGGTCCAGAAGGAAAATGTACTGTGCTATTCAGAAGCTTGGAAAGGGTTTTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0007275 GO:0007368 GO:0007389 GO:0007507 GO:0008150 GO:0009799 GO:0009855 GO:0009966 GO:0009968 GO:0010646 GO:0010648 GO:0023051 GO:0023057 GO:0030111 GO:0030178 GO:0032501 GO:0032502 GO:0048513 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0060828 GO:0065007 GO:0072359 GO:0090090 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAM_1 SAM_2

Protein Analysis

298

Amino Acids

33.18

Weight (kDa)

5.86

Isoelectric Point (pI)

56.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAM_1	PF00536	237 - 293	3.2e-13	SAM domain (Sterile alpha motif)
SAM_2	PF07647	241 - 293	1.3e-11	SAM domain (Sterile alpha motif)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48800 AT5G23680
fragaria_vesca	FvH4_4g22930 FvH4_5g09120 FvH4_5g09120
malus_domestica	MD04G1000300.v1.1 MD06G1133400.v1.1 MD13G1128000.v1.1 MD13G1128300.v1.1 MD14G1149800.v1.1 MD16G1128400.v1.1
prunus_persica	Prupe.5G144600_v2.0.a1 Prupe.5G144600_v2.0.a1
pyrus_communis	pycom13g11100 pycom14g12450 pycom16g10890
rosa_chinensis	RchiOBHm_Chr4g0429181 RchiOBHm_Chr7g0189071
rosa_laevigata	RLG00000004635 RLG00000007089
rosa_multiflora	Rmu_co7993242.1_g000001 Rmu_co8485617.1_g000001 Rmu_sc0004290.1_g000008 Rmu_sc0004872.1_g000001
rosa_rugosa	Rorug04G0233700 Rorug06G0496000
rosa_samantha	Rh4AG289600 Rh4BG295600 Rh4CG311100 Rh4DG292500 Rh7AG100400 Rh7BG102900 Rh7CG104400 Rh7DG102400
rosa_wichuraiana	Rw4G025090 Rw5G022550 Rw7G008680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	462
AccB1I	GGYRCC	1 cut(s)	462
AccB7I	CCANNNNNTGG	1 cut(s)	642
AccBSI	CCGCTC	1 cut(s)	277
AccII	CGCG	2 cut(s)	142, 389
AclWI	GGATC	2 cut(s)	369, 600
AcoI	YGGCCR	1 cut(s)	390
AcsI	RAATTY	4 cut(s)	238, 470, 532, 765
AfaI	GTAC	3 cut(s)	128, 464, 860
AfiI	CCNNNNNNNGG	6 cut(s)	145, 199, 276, 277, 366, 642
AgsI	TTSAA	1 cut(s)	502
AhlI	ACTAGT	1 cut(s)	659
AjnI	CCWGG	1 cut(s)	635
AluBI	AGCT	5 cut(s)	246, 321, 350, 610, 877
AluI	AGCT	5 cut(s)	246, 321, 350, 610, 877
Alw21I	GWGCWC	1 cut(s)	248
Alw26I	GTCTC	4 cut(s)	53, 111, 329, 562
AlwI	GGATC	2 cut(s)	369, 600
AoxI	GGCC	4 cut(s)	86, 227, 390, 617
ApeKI	GCWGC	1 cut(s)	79
ApoI	RAATTY	4 cut(s)	238, 470, 532, 765
ArsI	GACNNNNNNTTYG	4 cut(s)	214, 246, 571, 603
Asp718I	GGTACC	1 cut(s)	462
AspLEI	GCGC	1 cut(s)	359
AspS9I	GGNCC	5 cut(s)	87, 178, 617, 811, 843
AsuC2I	CCSGG	2 cut(s)	467, 616
AsuHPI	GGTGA	2 cut(s)	247, 340
AsuII	TTCGAA	3 cut(s)	134, 474, 762
AvaII	GGWCC	3 cut(s)	178, 811, 843
BanI	GGYRCC	1 cut(s)	462
BanII	GRGCYC	2 cut(s)	248, 515
Bbv12I	GWGCWC	1 cut(s)	248
BbvI	GCAGC	1 cut(s)	91
BccI	CCATC	6 cut(s)	40, 169, 443, 452, 593, 701
BceAI	ACGGC	3 cut(s)	46, 109, 604
BciT130I	CCWGG	1 cut(s)	637
BcnI	CCSGG	2 cut(s)	467, 616
BcoDI	GTCTC	4 cut(s)	53, 111, 329, 562
BcuI	ACTAGT	1 cut(s)	659
BfaI	CTAG	3 cut(s)	272, 582, 660
BfoI	RGCGCY	1 cut(s)	360
Bme1390I	CCNGG	3 cut(s)	467, 616, 637
Bme18I	GGWCC	3 cut(s)	178, 811, 843
BmgT120I	GGNCC	5 cut(s)	87, 178, 617, 811, 843
BmiI	GGNNCC	2 cut(s)	464, 844
BmrFI	CCNGG	3 cut(s)	467, 616, 637
BmrI	ACTGGG	1 cut(s)	749
BmsI	GCATC	1 cut(s)	622
BmuI	ACTGGG	1 cut(s)	749
BplI	GAGNNNNNCTC	2 cut(s)	154, 186
Bpu10I	CCTNAGC	1 cut(s)	733
Bpu14I	TTCGAA	3 cut(s)	134, 474, 762
BpuEI	CTTGAG	1 cut(s)	800
BpuMI	CCSGG	2 cut(s)	467, 616
BsaI	GGTCTC	3 cut(s)	111, 329, 562
BsaJI	CCNNGG	4 cut(s)	140, 525, 556, 636
BsaWI	WCCGGW	2 cut(s)	19, 192
Bsc4I	CCNNNNNNNGG	6 cut(s)	145, 199, 276, 277, 366, 642
Bse1I	ACTGG	1 cut(s)	755
BseBI	CCWGG	1 cut(s)	637
BseDI	CCNNGG	4 cut(s)	140, 525, 556, 636
BseGI	GGATG	2 cut(s)	454, 784
BseLI	CCNNNNNNNGG	6 cut(s)	145, 199, 276, 277, 366, 642
BseNI	ACTGG	1 cut(s)	755
BseRI	GAGGAG	2 cut(s)	129, 296
BseXI	GCAGC	1 cut(s)	91
BseYI	CCCAGC	1 cut(s)	89
Bsh1236I	CGCG	2 cut(s)	142, 389
Bsh1285I	CGRYCG	1 cut(s)	840
BshFI	GGCC	4 cut(s)	88, 229, 392, 619
BshNI	GGYRCC	1 cut(s)	462
BsiEI	CGRYCG	1 cut(s)	840
BsiHKAI	GWGCWC	1 cut(s)	248
BsiSI	CCGG	5 cut(s)	20, 193, 249, 466, 615
BsiWI	CGTACG	1 cut(s)	126
BslFI	GGGAC	2 cut(s)	670, 680
BslI	CCNNNNNNNGG	6 cut(s)	145, 199, 276, 277, 366, 642
BsmAI	GTCTC	4 cut(s)	53, 111, 329, 562
BsmBI	CGTCTC	1 cut(s)	53
BsmFI	GGGAC	2 cut(s)	670, 680
BsnI	GGCC	4 cut(s)	88, 229, 392, 619
Bso31I	GGTCTC	3 cut(s)	111, 329, 562
Bsp119I	TTCGAA	3 cut(s)	134, 474, 762
Bsp1286I	GDGCHC	2 cut(s)	248, 515
Bsp143I	GATC	4 cut(s)	24, 108, 374, 592
Bsp19I	CCATGG	1 cut(s)	556
BspANI	GGCC	4 cut(s)	88, 229, 392, 619
BspFNI	CGCG	2 cut(s)	142, 389
BspHI	TCATGA	3 cut(s)	42, 595, 769
BspLI	GGNNCC	2 cut(s)	464, 844
BspPI	GGATC	2 cut(s)	369, 600
BspT104I	TTCGAA	3 cut(s)	134, 474, 762
BspT107I	GGYRCC	1 cut(s)	462
BspTNI	GGTCTC	3 cut(s)	111, 329, 562
BsrBI	CCGCTC	1 cut(s)	277
BsrI	ACTGG	1 cut(s)	755
BssECI	CCNNGG	4 cut(s)	140, 525, 556, 636
BssMI	GATC	4 cut(s)	24, 108, 374, 592
BssT1I	CCWWGG	1 cut(s)	556
Bst2UI	CCWGG	1 cut(s)	637
Bst4CI	ACNGT	2 cut(s)	64, 863
Bst6I	CTCTTC	2 cut(s)	359, 477
BstBI	TTCGAA	3 cut(s)	134, 474, 762
BstC8I	GCNNGC	2 cut(s)	35, 147
BstDEI	CTNAG	1 cut(s)	733
BstDSI	CCRYGG	2 cut(s)	140, 556
BstF5I	GGATG	2 cut(s)	454, 784
BstFNI	CGCG	2 cut(s)	142, 389
BstH2I	RGCGCY	1 cut(s)	360
BstHHI	GCGC	1 cut(s)	359
BstKTI	GATC	4 cut(s)	27, 111, 377, 595
BstMAI	GTCTC	4 cut(s)	53, 111, 329, 562
BstMBI	GATC	4 cut(s)	24, 108, 374, 592
BstMCI	CGRYCG	1 cut(s)	840
BstMWI	GCNNNNNNNGC	7 cut(s)	85, 163, 356, 414, 417, 420, 616
BstNI	CCWGG	1 cut(s)	637
BstSCI	CCNGG	3 cut(s)	465, 614, 635
BstUI	CGCG	2 cut(s)	142, 389
BstV1I	GCAGC	1 cut(s)	91
BstX2I	RGATCY	1 cut(s)	374
BstYI	RGATCY	1 cut(s)	374
BsuRI	GGCC	4 cut(s)	88, 229, 392, 619
BtgI	CCRYGG	2 cut(s)	140, 556
BtgZI	GCGATG	1 cut(s)	438
BtsCI	GGATG	2 cut(s)	454, 784
BtsI	GCAGTG	1 cut(s)	164
BtsIMutI	CAGTG	2 cut(s)	164, 762
Cac8I	GCNNGC	2 cut(s)	35, 147
CciI	TCATGA	3 cut(s)	42, 595, 769
CfoI	GCGC	1 cut(s)	359
Cfr13I	GGNCC	5 cut(s)	87, 178, 617, 811, 843
Cfr42I	CCGCGG	1 cut(s)	143
CseI	GACGC	1 cut(s)	82
Csp6I	GTAC	3 cut(s)	127, 463, 859
CviAII	CATG	5 cut(s)	43, 557, 596, 770, 823
CviQI	GTAC	3 cut(s)	127, 463, 859
DdeI	CTNAG	1 cut(s)	733
DpnI	GATC	4 cut(s)	26, 110, 376, 594
DpnII	GATC	4 cut(s)	24, 108, 374, 592
EaeI	YGGCCR	1 cut(s)	390
Eam1104I	CTCTTC	2 cut(s)	359, 477
EarI	CTCTTC	2 cut(s)	359, 477
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	246
Eco130I	CCWWGG	1 cut(s)	556
Eco24I	GRGCYC	2 cut(s)	248, 515
Eco31I	GGTCTC	3 cut(s)	111, 329, 562
Eco47I	GGWCC	3 cut(s)	178, 811, 843
Eco53kI	GAGCTC	1 cut(s)	246
EcoICRI	GAGCTC	1 cut(s)	246
EcoO109I	RGGNCCY	1 cut(s)	811
EcoRI	GAATTC	1 cut(s)	470
EcoRII	CCWGG	1 cut(s)	635
EcoT14I	CCWWGG	1 cut(s)	556
EcoT38I	GRGCYC	2 cut(s)	248, 515
ErhI	CCWWGG	1 cut(s)	556
Esp3I	CGTCTC	1 cut(s)	53
FaeI	CATG	5 cut(s)	46, 560, 599, 773, 826
FaiI	YATR	6 cut(s)	44, 558, 597, 750, 771, 824
FaqI	GGGAC	2 cut(s)	670, 680
FatI	CATG	5 cut(s)	42, 556, 595, 769, 822
FauI	CCCGC	5 cut(s)	26, 138, 147, 245, 270
FokI	GGATG	2 cut(s)	461, 791
FriOI	GRGCYC	2 cut(s)	248, 515
FspBI	CTAG	3 cut(s)	272, 582, 660
GlaI	GCGC	1 cut(s)	358
GsaI	CCCAGC	1 cut(s)	93
HaeII	RGCGCY	1 cut(s)	360
HaeIII	GGCC	4 cut(s)	88, 229, 392, 619
HapII	CCGG	5 cut(s)	20, 193, 249, 466, 615
HgaI	GACGC	1 cut(s)	82
HhaI	GCGC	1 cut(s)	359
Hin1II	CATG	5 cut(s)	46, 560, 599, 773, 826
Hin6I	GCGC	1 cut(s)	357
HinP1I	GCGC	1 cut(s)	357
HindIII	AAGCTT	1 cut(s)	875
HinfI	GANTC	5 cut(s)	131, 203, 223, 485, 742
HpaII	CCGG	5 cut(s)	20, 193, 249, 466, 615
HphI	GGTGA	2 cut(s)	247, 340
Hpy188I	TCNGA	9 cut(s)	58, 98, 113, 174, 374, 490, 529, 625, 873
Hpy188III	TCNNGA	5 cut(s)	43, 596, 770, 846, 894
Hpy99I	CGWCG	3 cut(s)	58, 154, 625
HpyAV	CCTTC	3 cut(s)	319, 677, 843
HpyCH4III	ACNGT	2 cut(s)	64, 863
HpyF10VI	GCNNNNNNNGC	7 cut(s)	85, 163, 356, 414, 417, 420, 616
HpyF3I	CTNAG	1 cut(s)	733
Hsp92II	CATG	5 cut(s)	46, 560, 599, 773, 826
HspAI	GCGC	1 cut(s)	357
KpnI	GGTACC	1 cut(s)	466
KspI	CCGCGG	1 cut(s)	143
Kzo9I	GATC	4 cut(s)	24, 108, 374, 592
LmnI	GCTCC	2 cut(s)	251, 318
Lsp1109I	GCAGC	1 cut(s)	91
LweI	GCATC	1 cut(s)	622
MaeI	CTAG	3 cut(s)	272, 582, 660
MalI	GATC	4 cut(s)	26, 110, 376, 594
MbiI	CCGCTC	1 cut(s)	277
MboI	GATC	4 cut(s)	24, 108, 374, 592
MboII	GAAGA	4 cut(s)	376, 467, 494, 716
MfeI	CAATTG	1 cut(s)	379
MflI	RGATCY	1 cut(s)	374
MhlI	GDGCHC	2 cut(s)	248, 515
MluCI	AATT	8 cut(s)	38, 238, 379, 470, 516, 532, 573, 765
MlyI	GAGTC	4 cut(s)	212, 217, 494, 751
MmeI	TCCRAC	3 cut(s)	36, 468, 603
MslI	CAYNNNNRTG	1 cut(s)	600
MspA1I	CMGCKG	3 cut(s)	82, 142, 438
MspI	CCGG	5 cut(s)	20, 193, 249, 466, 615
MspR9I	CCNGG	3 cut(s)	467, 616, 637
MunI	CAATTG	1 cut(s)	379
MvaI	CCWGG	1 cut(s)	637
MvnI	CGCG	2 cut(s)	142, 389
MwoI	GCNNNNNNNGC	7 cut(s)	85, 163, 356, 414, 417, 420, 616
NciI	CCSGG	2 cut(s)	467, 616
NcoI	CCATGG	1 cut(s)	556
NdeII	GATC	4 cut(s)	24, 108, 374, 592
NlaIII	CATG	5 cut(s)	46, 560, 599, 773, 826
NlaIV	GGNNCC	2 cut(s)	464, 844
NmeAIII	GCCGAG	1 cut(s)	205
NspV	TTCGAA	3 cut(s)	134, 474, 762
PagI	TCATGA	3 cut(s)	42, 595, 769
PcsI	WCGNNNNNNNCGW	3 cut(s)	68, 212, 359
PfeI	GAWTC	1 cut(s)	131
Pfl23II	CGTACG	1 cut(s)	126
PflMI	CCANNNNNTGG	1 cut(s)	642
PleI	GAGTC	4 cut(s)	211, 217, 493, 750
PpsI	GAGTC	4 cut(s)	211, 217, 493, 750
PpuMI	RGGWCCY	1 cut(s)	811
Psp124BI	GAGCTC	1 cut(s)	248
Psp5II	RGGWCCY	1 cut(s)	811
Psp6I	CCWGG	1 cut(s)	635
PspFI	CCCAGC	1 cut(s)	89
PspGI	CCWGG	1 cut(s)	635
PspLI	CGTACG	1 cut(s)	126
PspN4I	GGNNCC	2 cut(s)	464, 844
PspPI	GGNCC	5 cut(s)	87, 178, 617, 811, 843
PspPPI	RGGWCCY	1 cut(s)	811
PsuI	RGATCY	1 cut(s)	374
RsaI	GTAC	3 cut(s)	128, 464, 860
RsaNI	GTAC	3 cut(s)	127, 463, 859
RseI	CAYNNNNRTG	1 cut(s)	600
SacI	GAGCTC	1 cut(s)	248
SacII	CCGCGG	1 cut(s)	143
Sau3AI	GATC	4 cut(s)	24, 108, 374, 592
Sau96I	GGNCC	5 cut(s)	87, 178, 617, 811, 843
SchI	GAGTC	4 cut(s)	212, 217, 494, 751
ScrFI	CCNGG	3 cut(s)	467, 616, 637
SduI	GDGCHC	2 cut(s)	248, 515
SfaNI	GCATC	1 cut(s)	622
Sfr303I	CCGCGG	1 cut(s)	143
SfuI	TTCGAA	3 cut(s)	134, 474, 762
SgrBI	CCGCGG	1 cut(s)	143
SinI	GGWCC	3 cut(s)	178, 811, 843
SmiMI	CAYNNNNRTG	1 cut(s)	600
SmlI	CTYRAG	1 cut(s)	815
SmoI	CTYRAG	1 cut(s)	815
SpeI	ACTAGT	1 cut(s)	659
Sse9I	AATT	8 cut(s)	38, 238, 379, 470, 516, 532, 573, 765
SspMI	CTAG	3 cut(s)	272, 582, 660
SstI	GAGCTC	1 cut(s)	248
StyD4I	CCNGG	3 cut(s)	465, 614, 635
StyI	CCWWGG	1 cut(s)	556
TaaI	ACNGT	2 cut(s)	64, 863
TaqI	TCGA	7 cut(s)	134, 206, 261, 300, 353, 474, 762
TasI	AATT	8 cut(s)	38, 238, 379, 470, 516, 532, 573, 765
TatI	WGTACW	1 cut(s)	858
TfiI	GAWTC	1 cut(s)	131
TscAI	CASTG	2 cut(s)	164, 762
TseI	GCWGC	1 cut(s)	79
TspDTI	ATGAA	6 cut(s)	31, 279, 509, 696, 758, 798
TspRI	CASTG	2 cut(s)	164, 762
Van91I	CCANNNNNTGG	1 cut(s)	642
VpaK11BI	GGWCC	3 cut(s)	178, 811, 843
XapI	RAATTY	4 cut(s)	238, 470, 532, 765
XcmI	CCANNNNNNNNNTGG	1 cut(s)	97
XspI	CTAG	3 cut(s)	272, 582, 660

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.