Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0003205

Physical Location & Seq

Genomic Coordinates Reverse (-)

9707847 .. 9710788

Gene Structure 2942 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1128300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGCGACGAGCCAGACCCGGCTGGAGGCTCCCCAAGGACTCCAAATCGGTCAAGGCCCGGTCAATCACCAACCTCGTCAACGGCAACGAGTCCAACGAAATGACGCCGCCCGATGAGAGGAACCAAAACGGTGACGGAGGGTTCGAGTTCGGTAGCCGGAGAGTCAAGGCGAAGCGAGCCACGGGGACCAAGAGGATCCGATCGAATTGGGCTTCCAATTCGAAGCTCGACAATGGCGGTAGCAGAGAGGAGGGAGGCGAGTGGTTCAGCGCGGATCCCGATCAGGATAGTCCGGTGAGGGGCAGCACTCCGGTGAACTCGGGGGACGACGCGGGGGAGGATATGTGGGATGGGCAGAGGAGGACGGCGGGAAATTGGGCTAGGGCGTCGGTGAGCAGGGAGAACGATGCCGTTGAGGCGGATAGCATGCCGGAGTTGAATTGGAGTGGAGTGAGGTCGTGGCTGATAGAATTGGGGCTGAGCCGGTACACACCGGTGTTCGAGATACGCGAGGTGGACGACGAGGTGCTGCCGATGCACGTTGGAGGAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAM_1 SAM_2

Protein Analysis

185

Amino Acids

20.39

Weight (kDa)

5.39

Isoelectric Point (pI)

49.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48800 AT5G23680
fragaria_vesca	FvH4_4g22930 FvH4_5g09120 FvH4_5g09120
malus_domestica	MD04G1000300.v1.1 MD06G1133400.v1.1 MD13G1128000.v1.1 MD13G1128300.v1.1 MD14G1149800.v1.1 MD16G1128400.v1.1
prunus_persica	Prupe.5G144600_v2.0.a1 Prupe.5G144600_v2.0.a1
pyrus_communis	pycom13g11100 pycom14g12450 pycom16g10890
rosa_chinensis	RchiOBHm_Chr4g0429181 RchiOBHm_Chr7g0189071
rosa_laevigata	RLG00000004635 RLG00000007089
rosa_multiflora	Rmu_co7993242.1_g000001 Rmu_co8485617.1_g000001 Rmu_sc0004290.1_g000008 Rmu_sc0004872.1_g000001
rosa_rugosa	Rorug04G0233700 Rorug06G0496000
rosa_samantha	Rh4AG289600 Rh4BG295600 Rh4CG311100 Rh4DG292500 Rh7AG100400 Rh7BG102900 Rh7CG104400 Rh7DG102400
rosa_wichuraiana	Rw4G025090 Rw5G022550 Rw7G008680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	272, 332, 510
AciI	CCGC	6 cut(s)	107, 237, 272, 332, 368, 419
AclWI	GGATC	4 cut(s)	190, 203, 269, 282
AcyI	GRCGYC	2 cut(s)	104, 386
AfaI	GTAC	1 cut(s)	488
AfiI	CCNNNNNNNGG	3 cut(s)	24, 117, 299
AgeI	ACCGGT	1 cut(s)	493
AgsI	TTSAA	1 cut(s)	439
AleI	CACNNNNGTG	2 cut(s)	311, 494
AluBI	AGCT	1 cut(s)	226
AluI	AGCT	1 cut(s)	226
AlwI	GGATC	4 cut(s)	190, 203, 269, 282
Ama87I	CYCGRG	1 cut(s)	319
AoxI	GGCC	1 cut(s)	54
ApeKI	GCWGC	2 cut(s)	303, 529
ArsI	GACNNNNNNTTYG	2 cut(s)	125, 157
AsiGI	ACCGGT	1 cut(s)	493
AspLEI	GCGC	1 cut(s)	272
AspS9I	GGNCC	2 cut(s)	55, 186
AsuC2I	CCSGG	2 cut(s)	18, 58
AsuHPI	GGTGA	5 cut(s)	58, 143, 307, 325, 403
AsuII	TTCGAA	1 cut(s)	221
AvaI	CYCGRG	1 cut(s)	319
AvaII	GGWCC	1 cut(s)	186
BamHI	GGATCC	2 cut(s)	195, 274
BbvI	GCAGC	2 cut(s)	315, 516
BccI	CCATC	1 cut(s)	344
BceAI	ACGGC	3 cut(s)	97, 381, 395
BcnI	CCSGG	2 cut(s)	18, 58
BfaI	CTAG	1 cut(s)	381
BglI	GCCNNNNNGGC	1 cut(s)	416
BisI	GCNGC	3 cut(s)	107, 304, 530
BlpI	GCTNAGC	1 cut(s)	479
BlsI	GCNGC	3 cut(s)	108, 305, 531
Bme1390I	CCNGG	2 cut(s)	18, 58
Bme18I	GGWCC	1 cut(s)	186
BmeT110I	CYCGRG	1 cut(s)	319
BmgT120I	GGNCC	2 cut(s)	55, 186
BmiI	GGNNCC	5 cut(s)	29, 122, 187, 197, 276
BmrFI	CCNGG	2 cut(s)	18, 58
BmsI	GCATC	2 cut(s)	397, 525
BpmI	CTGGAG	1 cut(s)	43
Bpu1102I	GCTNAGC	1 cut(s)	479
Bpu14I	TTCGAA	1 cut(s)	221
BpuMI	CCSGG	2 cut(s)	18, 58
BsaBI	GATNNNNATC	1 cut(s)	279
BsaHI	GRCGYC	2 cut(s)	104, 386
BsaJI	CCNNGG	2 cut(s)	33, 180
BsaWI	WCCGGW	3 cut(s)	292, 310, 493
BsaXI	ACNNNNNCTCC	2 cut(s)	329, 359
Bsc4I	CCNNNNNNNGG	3 cut(s)	24, 117, 299
Bse118I	RCCGGY	2 cut(s)	483, 493
Bse8I	GATNNNNATC	1 cut(s)	279
BseDI	CCNNGG	2 cut(s)	33, 180
BseGI	GGATG	1 cut(s)	355
BseJI	GATNNNNATC	1 cut(s)	279
BseLI	CCNNNNNNNGG	3 cut(s)	24, 117, 299
BseMII	CTCAG	1 cut(s)	470
BseRI	GAGGAG	2 cut(s)	263, 373
BseXI	GCAGC	2 cut(s)	315, 516
Bsh1236I	CGCG	3 cut(s)	272, 332, 510
Bsh1285I	CGRYCG	1 cut(s)	203
BshFI	GGCC	1 cut(s)	56
BshTI	ACCGGT	1 cut(s)	493
BsiEI	CGRYCG	1 cut(s)	203
BsiHKCI	CYCGRG	1 cut(s)	319
BsiSI	CCGG	8 cut(s)	18, 58, 157, 293, 311, 431, 484, 494
BslFI	GGGAC	2 cut(s)	199, 338
BslI	CCNNNNNNNGG	3 cut(s)	24, 117, 299
BsmFI	GGGAC	2 cut(s)	199, 338
BsnI	GGCC	1 cut(s)	56
BsoBI	CYCGRG	1 cut(s)	319
Bsp119I	TTCGAA	1 cut(s)	221
Bsp143I	GATC	4 cut(s)	195, 200, 274, 280
Bsp1720I	GCTNAGC	1 cut(s)	479
BspACI	CCGC	6 cut(s)	107, 237, 272, 332, 368, 419
BspANI	GGCC	1 cut(s)	56
BspCNI	CTCAG	1 cut(s)	471
BspFNI	CGCG	3 cut(s)	272, 332, 510
BspLI	GGNNCC	5 cut(s)	29, 122, 187, 197, 276
BspPI	GGATC	4 cut(s)	190, 203, 269, 282
BspT104I	TTCGAA	1 cut(s)	221
BsrFI	RCCGGY	2 cut(s)	483, 493
BssAI	RCCGGY	2 cut(s)	483, 493
BssECI	CCNNGG	2 cut(s)	33, 180
BssMI	GATC	4 cut(s)	195, 200, 274, 280
BssNI	GRCGYC	2 cut(s)	104, 386
BssT1I	CCWWGG	1 cut(s)	33
Bst4CI	ACNGT	1 cut(s)	131
BstACI	GRCGYC	2 cut(s)	104, 386
BstBI	TTCGAA	1 cut(s)	221
BstC8I	GCNNGC	2 cut(s)	177, 428
BstDEI	CTNAG	1 cut(s)	479
BstDSI	CCRYGG	1 cut(s)	180
BstF5I	GGATG	1 cut(s)	355
BstFNI	CGCG	3 cut(s)	272, 332, 510
BstHHI	GCGC	1 cut(s)	272
BstKTI	GATC	4 cut(s)	198, 203, 277, 283
BstMBI	GATC	4 cut(s)	195, 200, 274, 280
BstMCI	CGRYCG	1 cut(s)	203
BstMWI	GCNNNNNNNGC	3 cut(s)	176, 416, 535
BstNSI	RCATGY	1 cut(s)	430
BstSCI	CCNGG	2 cut(s)	16, 56
BstUI	CGCG	3 cut(s)	272, 332, 510
BstV1I	GCAGC	2 cut(s)	315, 516
BstX2I	RGATCY	2 cut(s)	195, 274
BstYI	RGATCY	2 cut(s)	195, 274
BsuRI	GGCC	1 cut(s)	56
BtgI	CCRYGG	1 cut(s)	180
BtsCI	GGATG	1 cut(s)	355
Cac8I	GCNNGC	2 cut(s)	177, 428
CfoI	GCGC	1 cut(s)	272
Cfr10I	RCCGGY	2 cut(s)	483, 493
Cfr13I	GGNCC	2 cut(s)	55, 186
CseI	GACGC	3 cut(s)	112, 338, 375
Csp6I	GTAC	1 cut(s)	487
CspAI	ACCGGT	1 cut(s)	493
CviAII	CATG	1 cut(s)	427
CviQI	GTAC	1 cut(s)	487
DdeI	CTNAG	1 cut(s)	479
DpnI	GATC	4 cut(s)	197, 202, 276, 282
DpnII	GATC	4 cut(s)	195, 200, 274, 280
EciI	GGCGGA	1 cut(s)	434
Eco130I	CCWWGG	1 cut(s)	33
Eco47I	GGWCC	1 cut(s)	186
Eco88I	CYCGRG	1 cut(s)	319
EcoT14I	CCWWGG	1 cut(s)	33
ErhI	CCWWGG	1 cut(s)	33
FaeI	CATG	1 cut(s)	430
FaiI	YATR	2 cut(s)	344, 428
FaqI	GGGAC	2 cut(s)	199, 338
FatI	CATG	1 cut(s)	426
FauI	CCCGC	2 cut(s)	325, 361
Fnu4HI	GCNGC	3 cut(s)	107, 304, 530
FokI	GGATG	1 cut(s)	362
Fsp4HI	GCNGC	3 cut(s)	107, 304, 530
FspBI	CTAG	1 cut(s)	381
GlaI	GCGC	1 cut(s)	271
GluI	GCNGC	3 cut(s)	107, 304, 530
GsuI	CTGGAG	1 cut(s)	43
HaeIII	GGCC	1 cut(s)	56
HapII	CCGG	8 cut(s)	18, 58, 157, 293, 311, 431, 484, 494
HgaI	GACGC	3 cut(s)	112, 338, 375
HhaI	GCGC	1 cut(s)	272
Hin1I	GRCGYC	2 cut(s)	104, 386
Hin1II	CATG	1 cut(s)	430
Hin6I	GCGC	1 cut(s)	270
HinP1I	GCGC	1 cut(s)	270
HincII	GTYRAC	1 cut(s)	79
HindII	GTYRAC	1 cut(s)	79
HinfI	GANTC	3 cut(s)	38, 89, 162
HpaII	CCGG	8 cut(s)	18, 58, 157, 293, 311, 431, 484, 494
HphI	GGTGA	5 cut(s)	58, 143, 307, 325, 403
Hpy166II	GTNNAC	4 cut(s)	79, 316, 489, 517
Hpy188I	TCNGA	1 cut(s)	200
Hpy188III	TCNNGA	3 cut(s)	278, 284, 502
Hpy8I	GTNNAC	4 cut(s)	79, 316, 489, 517
Hpy99I	CGWCG	4 cut(s)	9, 332, 391, 524
HpyCH4III	ACNGT	1 cut(s)	131
HpyCH4IV	ACGT	1 cut(s)	540
HpyCH4V	TGCA	1 cut(s)	538
HpyF10VI	GCNNNNNNNGC	3 cut(s)	176, 416, 535
HpyF3I	CTNAG	1 cut(s)	479
HpySE526I	ACGT	1 cut(s)	540
Hsp92I	GRCGYC	2 cut(s)	104, 386
Hsp92II	CATG	1 cut(s)	430
HspAI	GCGC	1 cut(s)	270
Kzo9I	GATC	4 cut(s)	195, 200, 274, 280
LmnI	GCTCC	1 cut(s)	33
Lsp1109I	GCAGC	2 cut(s)	315, 516
LweI	GCATC	2 cut(s)	397, 525
MaeI	CTAG	1 cut(s)	381
MaeII	ACGT	1 cut(s)	540
MaeIII	GTNAC	1 cut(s)	131
MalI	GATC	4 cut(s)	197, 202, 276, 282
MboI	GATC	4 cut(s)	195, 200, 274, 280
MflI	RGATCY	2 cut(s)	195, 274
MluCI	AATT	5 cut(s)	205, 217, 373, 439, 470
MlyI	GAGTC	3 cut(s)	32, 98, 171
MmeI	TCCRAC	2 cut(s)	117, 523
MseI	TTAA	1 cut(s)	553
MslI	CAYNNNNRTG	2 cut(s)	311, 494
MspI	CCGG	8 cut(s)	18, 58, 157, 293, 311, 431, 484, 494
MspR9I	CCNGG	2 cut(s)	18, 58
MvnI	CGCG	3 cut(s)	272, 332, 510
MwoI	GCNNNNNNNGC	3 cut(s)	176, 416, 535
NciI	CCSGG	2 cut(s)	18, 58
NdeII	GATC	4 cut(s)	195, 200, 274, 280
NlaIII	CATG	1 cut(s)	430
NlaIV	GGNNCC	5 cut(s)	29, 122, 187, 197, 276
NmuCI	GTSAC	1 cut(s)	131
NspI	RCATGY	1 cut(s)	430
NspV	TTCGAA	1 cut(s)	221
OliI	CACNNNNGTG	2 cut(s)	311, 494
PaeI	GCATGC	1 cut(s)	430
PcsI	WCGNNNNNNNCGW	3 cut(s)	93, 141, 507
PinAI	ACCGGT	1 cut(s)	493
PkrI	GCNGC	3 cut(s)	108, 305, 531
Ple19I	CGATCG	1 cut(s)	203
PleI	GAGTC	3 cut(s)	32, 97, 170
PpsI	GAGTC	3 cut(s)	32, 97, 170
PspN4I	GGNNCC	5 cut(s)	29, 122, 187, 197, 276
PspPI	GGNCC	2 cut(s)	55, 186
PsuI	RGATCY	2 cut(s)	195, 274
PvuI	CGATCG	1 cut(s)	203
RsaI	GTAC	1 cut(s)	488
RsaNI	GTAC	1 cut(s)	487
RseI	CAYNNNNRTG	2 cut(s)	311, 494
SaqAI	TTAA	1 cut(s)	553
SatI	GCNGC	3 cut(s)	107, 304, 530
Sau3AI	GATC	4 cut(s)	195, 200, 274, 280
Sau96I	GGNCC	2 cut(s)	55, 186
SchI	GAGTC	3 cut(s)	32, 98, 171
ScrFI	CCNGG	2 cut(s)	18, 58
SetI	ASST	6 cut(s)	75, 228, 458, 516, 528, 543
SfaNI	GCATC	2 cut(s)	397, 525
SfuI	TTCGAA	1 cut(s)	221
SgrAI	CRCCGGYG	1 cut(s)	493
SinI	GGWCC	1 cut(s)	186
SmiMI	CAYNNNNRTG	2 cut(s)	311, 494
SphI	GCATGC	1 cut(s)	430
Sse9I	AATT	5 cut(s)	205, 217, 373, 439, 470
SsiI	CCGC	6 cut(s)	107, 237, 272, 332, 368, 419
SspMI	CTAG	1 cut(s)	381
StyD4I	CCNGG	2 cut(s)	16, 56
StyI	CCWWGG	1 cut(s)	33
TaaI	ACNGT	1 cut(s)	131
TaiI	ACGT	1 cut(s)	543
TaqI	TCGA	5 cut(s)	144, 203, 221, 228, 501
TaqII	GACCGA	1 cut(s)	37
TasI	AATT	5 cut(s)	205, 217, 373, 439, 470
TauI	GCSGC	1 cut(s)	109
Tru1I	TTAA	1 cut(s)	553
Tru9I	TTAA	1 cut(s)	553
TseFI	GTSAC	1 cut(s)	131
TseI	GCWGC	2 cut(s)	303, 529
Tsp45I	GTSAC	1 cut(s)	131
TspGWI	ACGGA	1 cut(s)	150
VpaK11BI	GGWCC	1 cut(s)	186
XceI	RCATGY	1 cut(s)	430
XspI	CTAG	1 cut(s)	381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.