Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003205

Physical Location & Seq

Genomic Coordinates Reverse (-)

7985354 .. 7986851

Gene Structure 1498 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G23680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGCCGAGTTACAGTTAGTAGAAGGTCACCAGATTAACGGCGGTTTTATCCCGCCGGCGATAATAAACTCAATCGAAGCACCGGAAACATCCGCCGCAGCCGGAGTTTCAGTCGGATCGAAACGATTGAGAAGACCTAGCGTTAGGTTAGGAGACATCGGCGGTGACCAGTACCACCAACACGTGGTTGCGGCGTACGATTCTCCGCAAGTCCGACGGCCGAAATGGAGACCTAGTGGTGGTGGTGGTGGTGGTGGTGGTAACAGGAAGGAGCCGAATAATCAGAGTGGGAAGACGACGTCGTCTTCGAGGACTCGAACTATGACGAATTTGAGCTCCGGTGGGTATGAGAATACTGGAACCCTAGATGAAGATCCGGTTTCGATTGGGAGTTGGCGGGTTAAGAAATGGGTCAAATCATCCGGTGGAGAGACGGCGGCGACGACGACGACGAATACAGCTTCGGCGAAGCGAGTTAGGTCGAATTGGGCGACGAGAAACGATGGTGTAGAGCAAGGAGATGAGAAATTCAGTGGAGAGGAAGAAGAAGAGGAAGAGGATGAAGAATTGGGAGGAGAAGAAGGGTTTAGGGATTTCAGCAGAGAAGATTCGGAGAGTCCGATGAAAGAACGAAGACGGTACGAGAATAGAGAGGTTGAATTGTTAGGAGATTGGCAAAGTGGAGGAAGAGGAAAAGAAGGAGTGAAGATATGGTTACAAGAGTTAGGGTTAGGGAGATATTGGCCAATGTTTGAGATGCATGAAGTTGATGAACAAGTGTTACCATTGTTGACATTGGAGGATCTTAAAGATATGGGGATTAATGCTGTTGGGTCTAGGAGGAAGATGTATTGTGCAATTCAGAAGCTTGGGAGGGAGTTCTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0007275 GO:0007368 GO:0007389 GO:0007507 GO:0008150 GO:0009799 GO:0009855 GO:0009966 GO:0009968 GO:0010646 GO:0010648 GO:0023051 GO:0023057 GO:0030111 GO:0030178 GO:0032501 GO:0032502 GO:0048513 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0060828 GO:0065007 GO:0072359 GO:0090090 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAM_1 SAM_2

Protein Analysis

295

Amino Acids

32.55

Weight (kDa)

5.32

Isoelectric Point (pI)

62.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAM_1	PF00536	232 - 290	1.2e-13	SAM domain (Sterile alpha motif)
SAM_2	PF07647	234 - 290	5.1e-14	SAM domain (Sterile alpha motif)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48800 AT5G23680
fragaria_vesca	FvH4_4g22930 FvH4_5g09120 FvH4_5g09120
malus_domestica	MD04G1000300.v1.1 MD06G1133400.v1.1 MD13G1128000.v1.1 MD13G1128300.v1.1 MD14G1149800.v1.1 MD16G1128400.v1.1
prunus_persica	Prupe.5G144600_v2.0.a1 Prupe.5G144600_v2.0.a1
pyrus_communis	pycom13g11100 pycom14g12450 pycom16g10890
rosa_chinensis	RchiOBHm_Chr4g0429181 RchiOBHm_Chr7g0189071
rosa_laevigata	RLG00000004635 RLG00000007089
rosa_multiflora	Rmu_co7993242.1_g000001 Rmu_co8485617.1_g000001 Rmu_sc0004290.1_g000008 Rmu_sc0004872.1_g000001
rosa_rugosa	Rorug04G0233700 Rorug06G0496000
rosa_samantha	Rh4AG289600 Rh4BG295600 Rh4CG311100 Rh4DG292500 Rh7AG100400 Rh7BG102900 Rh7CG104400 Rh7DG102400
rosa_wichuraiana	Rw4G025090 Rw5G022550 Rw7G008680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	301
AatII	GACGTC	1 cut(s)	302
AccB7I	CCANNNNNTGG	1 cut(s)	184
AciI	CCGC	9 cut(s)	42, 53, 93, 96, 162, 191, 206, 397, 437
AclWI	GGATC	3 cut(s)	124, 368, 810
AcoI	YGGCCR	3 cut(s)	3, 218, 743
AcsI	RAATTY	2 cut(s)	328, 527
AcvI	CACGTG	1 cut(s)	184
AcyI	GRCGYC	1 cut(s)	299
AfaI	GTAC	3 cut(s)	173, 197, 641
AfiI	CCNNNNNNNGG	2 cut(s)	184, 239
AflIII	ACRYGT	1 cut(s)	181
AgsI	TTSAA	1 cut(s)	659
AluBI	AGCT	3 cut(s)	336, 461, 868
AluI	AGCT	3 cut(s)	336, 461, 868
Alw21I	GWGCWC	1 cut(s)	338
Alw26I	GTCTC	3 cut(s)	147, 223, 425
AlwI	GGATC	3 cut(s)	124, 368, 810
AoxI	GGCC	3 cut(s)	3, 218, 743
ApeKI	GCWGC	1 cut(s)	98
ApoI	RAATTY	2 cut(s)	328, 527
ArsI	GACNNNNNNTTYG	2 cut(s)	289, 321
AseI	ATTAAT	1 cut(s)	822
AsuHPI	GGTGA	2 cut(s)	20, 176
BalI	TGGCCA	1 cut(s)	745
BanII	GRGCYC	1 cut(s)	338
BauI	CACGAG	1 cut(s)	883
BbrPI	CACGTG	1 cut(s)	184
BbsI	GAAGAC	4 cut(s)	139, 297, 299, 640
Bbv12I	GWGCWC	1 cut(s)	338
BbvI	GCAGC	1 cut(s)	110
BccI	CCATC	1 cut(s)	497
BceAI	ACGGC	3 cut(s)	55, 233, 450
BcoDI	GTCTC	3 cut(s)	147, 223, 425
BfaI	CTAG	4 cut(s)	138, 234, 365, 837
BisI	GCNGC	4 cut(s)	96, 99, 192, 438
BlsI	GCNGC	4 cut(s)	97, 100, 193, 439
BmiI	GGNNCC	2 cut(s)	273, 361
BmsI	GCATC	1 cut(s)	747
BpiI	GAAGAC	4 cut(s)	139, 297, 299, 640
BsaAI	YACGTR	1 cut(s)	184
BsaBI	GATNNNNATC	1 cut(s)	372
BsaHI	GRCGYC	1 cut(s)	299
BsaI	GGTCTC	1 cut(s)	223
BsaWI	WCCGGW	4 cut(s)	82, 338, 376, 422
BsaXI	ACNNNNNCTCC	5 cut(s)	96, 126, 220, 250, 869
Bsc4I	CCNNNNNNNGG	2 cut(s)	184, 239
Bse118I	RCCGGY	1 cut(s)	55
Bse1I	ACTGG	2 cut(s)	169, 361
Bse8I	GATNNNNATC	1 cut(s)	372
BseGI	GGATG	3 cut(s)	89, 419, 565
BseJI	GATNNNNATC	1 cut(s)	372
BseLI	CCNNNNNNNGG	2 cut(s)	184, 239
BseNI	ACTGG	2 cut(s)	169, 361
BseRI	GAGGAG	1 cut(s)	588
BseX3I	CGGCCG	1 cut(s)	218
BseXI	GCAGC	1 cut(s)	110
Bsh1285I	CGRYCG	1 cut(s)	221
BshFI	GGCC	3 cut(s)	5, 220, 745
BsiEI	CGRYCG	1 cut(s)	221
BsiHKAI	GWGCWC	1 cut(s)	338
BsiSI	CCGG	6 cut(s)	56, 83, 102, 339, 377, 423
BsiWI	CGTACG	1 cut(s)	195
BslI	CCNNNNNNNGG	2 cut(s)	184, 239
BsmAI	GTCTC	3 cut(s)	147, 223, 425
BsmBI	CGTCTC	1 cut(s)	425
BsnI	GGCC	3 cut(s)	5, 220, 745
Bso31I	GGTCTC	1 cut(s)	223
Bsp1286I	GDGCHC	1 cut(s)	338
Bsp143I	GATC	3 cut(s)	116, 373, 802
BspACI	CCGC	9 cut(s)	42, 53, 93, 96, 162, 191, 206, 397, 437
BspANI	GGCC	3 cut(s)	5, 220, 745
BspLI	GGNNCC	2 cut(s)	273, 361
BspPI	GGATC	3 cut(s)	124, 368, 810
BspTNI	GGTCTC	1 cut(s)	223
BsrFI	RCCGGY	1 cut(s)	55
BsrI	ACTGG	2 cut(s)	169, 361
BssAI	RCCGGY	1 cut(s)	55
BssMI	GATC	3 cut(s)	116, 373, 802
BssNI	GRCGYC	1 cut(s)	299
BssSI	CACGAG	1 cut(s)	883
Bst2BI	CACGAG	1 cut(s)	883
Bst4CI	ACNGT	2 cut(s)	15, 639
Bst6I	CTCTTC	3 cut(s)	543, 549, 682
BstACI	GRCGYC	1 cut(s)	299
BstBAI	YACGTR	1 cut(s)	184
BstC8I	GCNNGC	1 cut(s)	57
BstEII	GGTNACC	2 cut(s)	26, 164
BstF5I	GGATG	3 cut(s)	89, 419, 565
BstKTI	GATC	3 cut(s)	119, 376, 805
BstMAI	GTCTC	3 cut(s)	147, 223, 425
BstMBI	GATC	3 cut(s)	116, 373, 802
BstMCI	CGRYCG	1 cut(s)	221
BstPI	GGTNACC	2 cut(s)	26, 164
BstV1I	GCAGC	1 cut(s)	110
BstV2I	GAAGAC	4 cut(s)	139, 297, 299, 640
BstX2I	RGATCY	2 cut(s)	373, 802
BstYI	RGATCY	2 cut(s)	373, 802
BstZI	CGGCCG	1 cut(s)	218
BsuRI	GGCC	3 cut(s)	5, 220, 745
BtsCI	GGATG	3 cut(s)	89, 419, 565
BtsIMutI	CAGTG	1 cut(s)	538
Cac8I	GCNNGC	1 cut(s)	57
Cfr10I	RCCGGY	1 cut(s)	55
Csp6I	GTAC	3 cut(s)	172, 196, 640
CviAII	CATG	1 cut(s)	761
CviJI	RGCY	8 cut(s)	5, 101, 220, 274, 336, 461, 745, 868
CviKI_1	RGCY	8 cut(s)	5, 101, 220, 274, 336, 461, 745, 868
CviQI	GTAC	3 cut(s)	172, 196, 640
DpnI	GATC	3 cut(s)	118, 375, 804
DpnII	GATC	3 cut(s)	116, 373, 802
DrdI	GACNNNNNNGTC	1 cut(s)	301
DseDI	GACNNNNNNGTC	1 cut(s)	301
EaeI	YGGCCR	3 cut(s)	3, 218, 743
EagI	CGGCCG	1 cut(s)	218
Eam1104I	CTCTTC	3 cut(s)	543, 549, 682
EarI	CTCTTC	3 cut(s)	543, 549, 682
EciI	GGCGGA	1 cut(s)	82
Ecl136II	GAGCTC	1 cut(s)	336
EclXI	CGGCCG	1 cut(s)	218
Eco24I	GRGCYC	1 cut(s)	338
Eco31I	GGTCTC	1 cut(s)	223
Eco52I	CGGCCG	1 cut(s)	218
Eco53kI	GAGCTC	1 cut(s)	336
Eco72I	CACGTG	1 cut(s)	184
Eco91I	GGTNACC	2 cut(s)	26, 164
EcoICRI	GAGCTC	1 cut(s)	336
EcoO65I	GGTNACC	2 cut(s)	26, 164
EcoT22I	ATGCAT	1 cut(s)	762
EcoT38I	GRGCYC	1 cut(s)	338
Esp3I	CGTCTC	1 cut(s)	425
FaeI	CATG	1 cut(s)	764
FaiI	YATR	5 cut(s)	323, 348, 712, 762, 815
FatI	CATG	1 cut(s)	760
FauI	CCCGC	2 cut(s)	60, 390
Fnu4HI	GCNGC	4 cut(s)	96, 99, 192, 438
FokI	GGATG	3 cut(s)	76, 406, 572
FriOI	GRGCYC	1 cut(s)	338
Fsp4HI	GCNGC	4 cut(s)	96, 99, 192, 438
FspBI	CTAG	4 cut(s)	138, 234, 365, 837
GluI	GCNGC	4 cut(s)	96, 99, 192, 438
HaeIII	GGCC	3 cut(s)	5, 220, 745
HapII	CCGG	6 cut(s)	56, 83, 102, 339, 377, 423
Hin1I	GRCGYC	1 cut(s)	299
Hin1II	CATG	1 cut(s)	764
HincII	GTYRAC	1 cut(s)	792
HindII	GTYRAC	1 cut(s)	792
HindIII	AAGCTT	1 cut(s)	866
HinfI	GANTC	4 cut(s)	200, 313, 608, 616
HpaII	CCGG	6 cut(s)	56, 83, 102, 339, 377, 423
HphI	GGTGA	2 cut(s)	20, 176
Hpy166II	GTNNAC	1 cut(s)	792
Hpy188I	TCNGA	6 cut(s)	116, 215, 285, 613, 621, 864
Hpy188III	TCNNGA	1 cut(s)	885
Hpy8I	GTNNAC	1 cut(s)	792
Hpy99I	CGWCG	8 cut(s)	219, 301, 304, 445, 448, 451, 454, 496
HpyAV	CCTTC	4 cut(s)	17, 262, 575, 692
HpyCH4III	ACNGT	2 cut(s)	15, 639
HpyCH4IV	ACGT	2 cut(s)	183, 299
HpyCH4V	TGCA	2 cut(s)	760, 857
HpySE526I	ACGT	2 cut(s)	183, 299
Hsp92I	GRCGYC	1 cut(s)	299
Hsp92II	CATG	1 cut(s)	764
KroI	GCCGGC	1 cut(s)	55
KroNI	GCCGGC	1 cut(s)	57
Kzo9I	GATC	3 cut(s)	116, 373, 802
LmnI	GCTCC	2 cut(s)	271, 341
Lsp1109I	GCAGC	1 cut(s)	110
LweI	GCATC	1 cut(s)	747
MaeI	CTAG	4 cut(s)	138, 234, 365, 837
MaeII	ACGT	2 cut(s)	183, 299
MaeIII	GTNAC	6 cut(s)	9, 26, 164, 260, 714, 780
MalI	GATC	3 cut(s)	118, 375, 804
MboI	GATC	3 cut(s)	116, 373, 802
MflI	RGATCY	2 cut(s)	373, 802
MhlI	GDGCHC	1 cut(s)	338
MlsI	TGGCCA	1 cut(s)	745
MluCI	AATT	6 cut(s)	328, 484, 527, 566, 659, 858
MluNI	TGGCCA	1 cut(s)	745
MlyI	GAGTC	2 cut(s)	307, 625
MmeI	TCCRAC	2 cut(s)	94, 238
Mox20I	TGGCCA	1 cut(s)	745
Mph1103I	ATGCAT	1 cut(s)	762
MreI	CGCCGGCG	1 cut(s)	55
MroNI	GCCGGC	1 cut(s)	55
MscI	TGGCCA	1 cut(s)	745
MseI	TTAA	4 cut(s)	36, 402, 807, 822
Msp20I	TGGCCA	1 cut(s)	745
MspI	CCGG	6 cut(s)	56, 83, 102, 339, 377, 423
NaeI	GCCGGC	1 cut(s)	57
NdeII	GATC	3 cut(s)	116, 373, 802
NgoMIV	GCCGGC	1 cut(s)	55
NlaIII	CATG	1 cut(s)	764
NlaIV	GGNNCC	2 cut(s)	273, 361
NmeAIII	GCCGAG	1 cut(s)	31
NmuCI	GTSAC	2 cut(s)	26, 164
NsiI	ATGCAT	1 cut(s)	762
PcsI	WCGNNNNNNNCGW	5 cut(s)	305, 440, 449, 488, 617
PdiI	GCCGGC	1 cut(s)	57
PfeI	GAWTC	2 cut(s)	200, 608
Pfl23II	CGTACG	1 cut(s)	195
PflFI	GACNNNGTC	2 cut(s)	298, 301
PflMI	CCANNNNNTGG	1 cut(s)	184
PkrI	GCNGC	4 cut(s)	97, 100, 193, 439
PleI	GAGTC	2 cut(s)	307, 624
PmaCI	CACGTG	1 cut(s)	184
PmlI	CACGTG	1 cut(s)	184
PpsI	GAGTC	2 cut(s)	307, 624
Ppu21I	YACGTR	1 cut(s)	184
PshBI	ATTAAT	1 cut(s)	822
Psp124BI	GAGCTC	1 cut(s)	338
PspCI	CACGTG	1 cut(s)	184
PspEI	GGTNACC	2 cut(s)	26, 164
PspLI	CGTACG	1 cut(s)	195
PspN4I	GGNNCC	2 cut(s)	273, 361
PsrI	GAACNNNNNNTAC	2 cut(s)	765, 797
PsuI	RGATCY	2 cut(s)	373, 802
PsyI	GACNNNGTC	2 cut(s)	298, 301
RsaI	GTAC	3 cut(s)	173, 197, 641
RsaNI	GTAC	3 cut(s)	172, 196, 640
SacI	GAGCTC	1 cut(s)	338
SaqAI	TTAA	4 cut(s)	36, 402, 807, 822
SatI	GCNGC	4 cut(s)	96, 99, 192, 438
Sau3AI	GATC	3 cut(s)	116, 373, 802
SchI	GAGTC	2 cut(s)	307, 625
SduI	GDGCHC	1 cut(s)	338
SfaNI	GCATC	1 cut(s)	747
SgrAI	CRCCGGYG	1 cut(s)	55
Sse9I	AATT	6 cut(s)	328, 484, 527, 566, 659, 858
SsiI	CCGC	9 cut(s)	42, 53, 93, 96, 162, 191, 206, 397, 437
SspMI	CTAG	4 cut(s)	138, 234, 365, 837
SstI	GAGCTC	1 cut(s)	338
TaaI	ACNGT	2 cut(s)	15, 639
TaiI	ACGT	2 cut(s)	186, 302
TaqI	TCGA	6 cut(s)	75, 119, 308, 316, 383, 482
TasI	AATT	6 cut(s)	328, 484, 527, 566, 659, 858
TauI	GCSGC	3 cut(s)	98, 194, 440
TfiI	GAWTC	2 cut(s)	200, 608
Tru1I	TTAA	4 cut(s)	36, 402, 807, 822
Tru9I	TTAA	4 cut(s)	36, 402, 807, 822
TscAI	CASTG	1 cut(s)	538
TseFI	GTSAC	2 cut(s)	26, 164
TseI	GCWGC	1 cut(s)	98
Tsp45I	GTSAC	2 cut(s)	26, 164
TspDTI	ATGAA	5 cut(s)	384, 576, 638, 777, 786
TspRI	CASTG	1 cut(s)	538
Tth111I	GACNNNGTC	2 cut(s)	298, 301
Van91I	CCANNNNNTGG	1 cut(s)	184
VspI	ATTAAT	1 cut(s)	822
XapI	RAATTY	2 cut(s)	328, 527
XspI	CTAG	4 cut(s)	138, 234, 365, 837
ZraI	GACGTC	1 cut(s)	300
Zsp2I	ATGCAT	1 cut(s)	762

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.