Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0003205

Physical Location & Seq

Genomic Coordinates Forward (+)

27787762 .. 27790968

Gene Structure 3207 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1133400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGCGGAGATTCAACCGCAGCCGGTGAGTCAGATCAACGGCGGAGGGCAGTTCTTGACGGGTTCATCCGAGACGGTAGGATCGAAGCGACAGCGGAGGCCCAGCGTCCGATTGGGCGACATCGGAGGAGACCAGCCGTACGATTCGCAGGTGCGCCGCGCCACCAAGCAGTGGAAGTTCCCGCCGGACCACCGCAAAGACGCCAACAAGTCCTCAAAGATTCGACCTTTAACGAATTTGAGCTCAGTTGGGGAGTTCCATGAAACCCTAGACGGCGAAGACAGAGAGGGCAATCTTGATAGTGTTGCCATTGGGAGCTGGAAGGTCAAGGACGCCACGAAACGGGCTTCGAACGTCACCAAACGGGTCAGATCCAATTGGGTATCTTCCAAGATTGACGAAGGTGGCGGCGGCGGTGAAGGGGACGAGAAATTCAGTGGAGCAGAGGACGTTGATGAAGGGTATCATCGGGATTTCGAAGTCGAAAACTCGGAAAGTCCGTTGAAAGAGCAGAGCCCAATTCATAGTTCAGAGAATTTGGGCGTGGATGGGCGTGCCAATGGAAGGGAGCTGCTTTACCATGGAAGTAGAATACCCATTAGGACTAGGATTTCGGAGGGTAGGGACAACCATGATGGTATTGAGCTATCCGGGCCGTCGGATACCGATGCCAGGGATTGGAATTGCAGAGGAACAAGTGGGGATAGAAATGGGAATGAAGGAAGAGAGAGGTGTGGGGAAGATGGGGTTAGGGTTTGGCTCAATGGGTTAGGGTTAGGGCGGTATGCGCCGGTGTTTGAAATTCATGAGGTGGATGATGAGGTATTGCCCATGTTAACATTGGAGGACCTCAAGGATATGGGGATAAATGCAGTTGGGTCCAGGAGGAAAATCTATTGTGCAATTCAGAAGCTTGGGAAGGGATTTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0007275 GO:0007368 GO:0007389 GO:0007507 GO:0008150 GO:0009799 GO:0009855 GO:0009966 GO:0009968 GO:0010646 GO:0010648 GO:0023051 GO:0023057 GO:0030111 GO:0030178 GO:0032501 GO:0032502 GO:0048513 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0060828 GO:0065007 GO:0072359 GO:0090090 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAM_1 SAM_2

Protein Analysis

311

Amino Acids

34.12

Weight (kDa)

5.64

Isoelectric Point (pI)

43.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAM_1	PF00536	249 - 305	8.9e-14	SAM domain (Sterile alpha motif)
SAM_2	PF07647	253 - 305	1.8e-12	SAM domain (Sterile alpha motif)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48800 AT5G23680
fragaria_vesca	FvH4_4g22930 FvH4_5g09120 FvH4_5g09120
malus_domestica	MD04G1000300.v1.1 MD06G1133400.v1.1 MD13G1128000.v1.1 MD13G1128300.v1.1 MD14G1149800.v1.1 MD16G1128400.v1.1
prunus_persica	Prupe.5G144600_v2.0.a1 Prupe.5G144600_v2.0.a1
pyrus_communis	pycom13g11100 pycom14g12450 pycom16g10890
rosa_chinensis	RchiOBHm_Chr4g0429181 RchiOBHm_Chr7g0189071
rosa_laevigata	RLG00000004635 RLG00000007089
rosa_multiflora	Rmu_co7993242.1_g000001 Rmu_co8485617.1_g000001 Rmu_sc0004290.1_g000008 Rmu_sc0004872.1_g000001
rosa_rugosa	Rorug04G0233700 Rorug06G0496000
rosa_samantha	Rh4AG289600 Rh4BG295600 Rh4CG311100 Rh4DG292500 Rh7AG100400 Rh7BG102900 Rh7CG104400 Rh7DG102400
rosa_wichuraiana	Rw4G025090 Rw5G022550 Rw7G008680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	139
Acc36I	ACCTGC	1 cut(s)	139
AccB7I	CCANNNNNTGG	2 cut(s)	171, 678
AccII	CGCG	1 cut(s)	159
AclWI	GGATC	2 cut(s)	88, 366
AcsI	RAATTY	4 cut(s)	235, 431, 535, 801
AcyI	GRCGYC	2 cut(s)	201, 333
AfaI	GTAC	1 cut(s)	140
AfiI	CCNNNNNNNGG	5 cut(s)	171, 342, 564, 672, 678
AgsI	TTSAA	3 cut(s)	14, 505, 800
AjnI	CCWGG	2 cut(s)	671, 881
AjuI	GAANNNNNNNTTGG	2 cut(s)	511, 543
AluBI	AGCT	5 cut(s)	243, 318, 571, 646, 913
AluI	AGCT	5 cut(s)	243, 318, 571, 646, 913
Alw21I	GWGCWC	1 cut(s)	245
Alw26I	GTCTC	2 cut(s)	65, 123
AlwI	GGATC	2 cut(s)	88, 366
AoxI	GGCC	2 cut(s)	98, 653
ApeKI	GCWGC	2 cut(s)	19, 571
ApoI	RAATTY	4 cut(s)	235, 431, 535, 801
ArsI	GACNNNNNNTTYG	2 cut(s)	595, 627
AspLEI	GCGC	3 cut(s)	156, 161, 790
AspS9I	GGNCC	5 cut(s)	99, 187, 653, 847, 879
AsuC2I	CCSGG	1 cut(s)	652
AsuHPI	GGTGA	3 cut(s)	37, 349, 428
AsuII	TTCGAA	2 cut(s)	350, 477
AvaII	GGWCC	3 cut(s)	187, 847, 879
BanII	GRGCYC	2 cut(s)	245, 518
BbsI	GAAGAC	1 cut(s)	285
Bbv12I	GWGCWC	1 cut(s)	245
BbvI	GCAGC	2 cut(s)	31, 558
BccI	CCATC	3 cut(s)	542, 629, 737
BceAI	ACGGC	4 cut(s)	55, 121, 289, 640
BciT130I	CCWGG	2 cut(s)	673, 883
BciVI	GTATCC	1 cut(s)	655
BcnI	CCSGG	1 cut(s)	652
BcoDI	GTCTC	2 cut(s)	65, 123
BfaI	CTAG	2 cut(s)	269, 606
BfuAI	ACCTGC	1 cut(s)	139
BfuI	GTATCC	1 cut(s)	655
BisI	GCNGC	5 cut(s)	20, 157, 409, 412, 572
BlsI	GCNGC	5 cut(s)	21, 158, 410, 413, 573
Bme1390I	CCNGG	3 cut(s)	652, 673, 883
Bme18I	GGWCC	3 cut(s)	187, 847, 879
BmgT120I	GGNCC	5 cut(s)	99, 187, 653, 847, 879
BmiI	GGNNCC	1 cut(s)	880
BmrFI	CCNGG	3 cut(s)	652, 673, 883
BmsI	GCATC	1 cut(s)	658
BpiI	GAAGAC	1 cut(s)	285
Bpu14I	TTCGAA	2 cut(s)	350, 477
BpuEI	CTTGAG	1 cut(s)	836
BpuMI	CCSGG	1 cut(s)	652
BsaHI	GRCGYC	2 cut(s)	201, 333
BsaI	GGTCTC	1 cut(s)	123
BsaJI	CCNNGG	2 cut(s)	580, 672
Bsc4I	CCNNNNNNNGG	5 cut(s)	171, 342, 564, 672, 678
Bse118I	RCCGGY	2 cut(s)	22, 790
BseBI	CCWGG	2 cut(s)	673, 883
BseDI	CCNNGG	2 cut(s)	580, 672
BseGI	GGATG	3 cut(s)	65, 553, 820
BseLI	CCNNNNNNNGG	5 cut(s)	171, 342, 564, 672, 678
BseMII	CTCAG	1 cut(s)	258
BseRI	GAGGAG	1 cut(s)	141
BseXI	GCAGC	2 cut(s)	31, 558
BseYI	CCCAGC	1 cut(s)	101
Bsh1236I	CGCG	1 cut(s)	159
BshFI	GGCC	2 cut(s)	100, 655
BsiHKAI	GWGCWC	1 cut(s)	245
BsiSI	CCGG	4 cut(s)	23, 185, 651, 791
BsiWI	CGTACG	1 cut(s)	138
BslFI	GGGAC	2 cut(s)	437, 638
BslI	CCNNNNNNNGG	5 cut(s)	171, 342, 564, 672, 678
BsmAI	GTCTC	2 cut(s)	65, 123
BsmBI	CGTCTC	1 cut(s)	65
BsmFI	GGGAC	2 cut(s)	437, 638
BsnI	GGCC	2 cut(s)	100, 655
Bso31I	GGTCTC	1 cut(s)	123
Bsp119I	TTCGAA	2 cut(s)	350, 477
Bsp1286I	GDGCHC	2 cut(s)	245, 518
Bsp143I	GATC	3 cut(s)	33, 80, 371
Bsp19I	CCATGG	1 cut(s)	580
BspANI	GGCC	2 cut(s)	100, 655
BspCNI	CTCAG	1 cut(s)	257
BspFNI	CGCG	1 cut(s)	159
BspHI	TCATGA	1 cut(s)	805
BspLI	GGNNCC	1 cut(s)	880
BspMI	ACCTGC	1 cut(s)	139
BspPI	GGATC	2 cut(s)	88, 366
BspT104I	TTCGAA	2 cut(s)	350, 477
BspTNI	GGTCTC	1 cut(s)	123
BsrFI	RCCGGY	2 cut(s)	22, 790
BssAI	RCCGGY	2 cut(s)	22, 790
BssECI	CCNNGG	2 cut(s)	580, 672
BssMI	GATC	3 cut(s)	33, 80, 371
BssNI	GRCGYC	2 cut(s)	201, 333
BssT1I	CCWWGG	1 cut(s)	580
Bst2UI	CCWGG	2 cut(s)	673, 883
Bst4CI	ACNGT	1 cut(s)	76
Bst6I	CTCTTC	1 cut(s)	718
BstACI	GRCGYC	2 cut(s)	201, 333
BstBI	TTCGAA	2 cut(s)	350, 477
BstC8I	GCNNGC	1 cut(s)	555
BstDEI	CTNAG	1 cut(s)	244
BstDSI	CCRYGG	1 cut(s)	580
BstF5I	GGATG	3 cut(s)	65, 553, 820
BstFNI	CGCG	1 cut(s)	159
BstHHI	GCGC	3 cut(s)	156, 161, 790
BstKTI	GATC	3 cut(s)	36, 83, 374
BstMAI	GTCTC	2 cut(s)	65, 123
BstMBI	GATC	3 cut(s)	33, 80, 371
BstMWI	GCNNNNNNNGC	2 cut(s)	652, 787
BstNI	CCWGG	2 cut(s)	673, 883
BstSCI	CCNGG	3 cut(s)	650, 671, 881
BstUI	CGCG	1 cut(s)	159
BstV1I	GCAGC	2 cut(s)	31, 558
BstV2I	GAAGAC	1 cut(s)	285
BstX2I	RGATCY	1 cut(s)	371
BstYI	RGATCY	1 cut(s)	371
BsuI	GTATCC	1 cut(s)	655
BsuRI	GGCC	2 cut(s)	100, 655
BtgI	CCRYGG	1 cut(s)	580
BtsCI	GGATG	3 cut(s)	65, 553, 820
BtsI	GCAGTG	1 cut(s)	176
BtsIMutI	CAGTG	2 cut(s)	176, 442
BveI	ACCTGC	1 cut(s)	139
Cac8I	GCNNGC	1 cut(s)	555
CciI	TCATGA	1 cut(s)	805
CfoI	GCGC	3 cut(s)	156, 161, 790
Cfr10I	RCCGGY	2 cut(s)	22, 790
Cfr13I	GGNCC	5 cut(s)	99, 187, 653, 847, 879
CseI	GACGC	3 cut(s)	94, 209, 341
Csp6I	GTAC	1 cut(s)	139
CviAII	CATG	5 cut(s)	260, 581, 632, 806, 832
CviQI	GTAC	1 cut(s)	139
DdeI	CTNAG	1 cut(s)	244
DpnI	GATC	3 cut(s)	35, 82, 373
DpnII	GATC	3 cut(s)	33, 80, 371
Eam1104I	CTCTTC	1 cut(s)	718
EarI	CTCTTC	1 cut(s)	718
EciI	GGCGGA	2 cut(s)	20, 57
Ecl136II	GAGCTC	1 cut(s)	243
Eco130I	CCWWGG	1 cut(s)	580
Eco24I	GRGCYC	2 cut(s)	245, 518
Eco31I	GGTCTC	1 cut(s)	123
Eco47I	GGWCC	3 cut(s)	187, 847, 879
Eco53kI	GAGCTC	1 cut(s)	243
EcoICRI	GAGCTC	1 cut(s)	243
EcoO109I	RGGNCCY	1 cut(s)	847
EcoRII	CCWGG	2 cut(s)	671, 881
EcoT14I	CCWWGG	1 cut(s)	580
EcoT38I	GRGCYC	2 cut(s)	245, 518
ErhI	CCWWGG	1 cut(s)	580
Esp3I	CGTCTC	1 cut(s)	65
FaeI	CATG	5 cut(s)	263, 584, 635, 809, 835
FaiI	YATR	8 cut(s)	261, 525, 582, 633, 786, 807, 833, 860
FaqI	GGGAC	2 cut(s)	437, 638
FatI	CATG	5 cut(s)	259, 580, 631, 805, 831
FauI	CCCGC	1 cut(s)	189
Fnu4HI	GCNGC	5 cut(s)	20, 157, 409, 412, 572
FokI	GGATG	3 cut(s)	52, 560, 827
FriOI	GRGCYC	2 cut(s)	245, 518
Fsp4HI	GCNGC	5 cut(s)	20, 157, 409, 412, 572
FspBI	CTAG	2 cut(s)	269, 606
GlaI	GCGC	3 cut(s)	155, 160, 789
GluI	GCNGC	5 cut(s)	20, 157, 409, 412, 572
GsaI	CCCAGC	1 cut(s)	105
HaeIII	GGCC	2 cut(s)	100, 655
HapII	CCGG	4 cut(s)	23, 185, 651, 791
HgaI	GACGC	3 cut(s)	94, 209, 341
HhaI	GCGC	3 cut(s)	156, 161, 790
Hin1I	GRCGYC	2 cut(s)	201, 333
Hin1II	CATG	5 cut(s)	263, 584, 635, 809, 835
Hin6I	GCGC	3 cut(s)	154, 159, 788
HinP1I	GCGC	3 cut(s)	154, 159, 788
HincII	GTYRAC	1 cut(s)	837
HindII	GTYRAC	1 cut(s)	837
HindIII	AAGCTT	1 cut(s)	911
HinfI	GANTC	4 cut(s)	10, 28, 143, 220
HpaI	GTTAAC	1 cut(s)	837
HpaII	CCGG	4 cut(s)	23, 185, 651, 791
HphI	GGTGA	3 cut(s)	37, 349, 428
Hpy166II	GTNNAC	1 cut(s)	837
Hpy188III	TCNNGA	5 cut(s)	55, 296, 470, 806, 930
Hpy8I	GTNNAC	1 cut(s)	837
Hpy99I	CGWCG	1 cut(s)	661
HpyAV	CCTTC	7 cut(s)	316, 395, 413, 452, 558, 713, 913
HpyCH4III	ACNGT	1 cut(s)	76
HpyCH4IV	ACGT	2 cut(s)	354, 450
HpyCH4V	TGCA	3 cut(s)	687, 872, 902
HpyF10VI	GCNNNNNNNGC	2 cut(s)	652, 787
HpyF3I	CTNAG	1 cut(s)	244
HpySE526I	ACGT	2 cut(s)	354, 450
Hsp92I	GRCGYC	2 cut(s)	201, 333
Hsp92II	CATG	5 cut(s)	263, 584, 635, 809, 835
HspAI	GCGC	3 cut(s)	154, 159, 788
KspAI	GTTAAC	1 cut(s)	837
Kzo9I	GATC	3 cut(s)	33, 80, 371
LmnI	GCTCC	3 cut(s)	315, 440, 568
Lsp1109I	GCAGC	2 cut(s)	31, 558
LweI	GCATC	1 cut(s)	658
MaeI	CTAG	2 cut(s)	269, 606
MaeII	ACGT	2 cut(s)	354, 450
MaeIII	GTNAC	1 cut(s)	355
MalI	GATC	3 cut(s)	35, 82, 373
MboI	GATC	3 cut(s)	33, 80, 371
MboII	GAAGA	4 cut(s)	290, 378, 735, 752
MfeI	CAATTG	1 cut(s)	376
MflI	RGATCY	1 cut(s)	371
MhlI	GDGCHC	2 cut(s)	245, 518
MluCI	AATT	8 cut(s)	235, 376, 431, 519, 535, 682, 801, 903
MlyI	GAGTC	1 cut(s)	37
MmeI	TCCRAC	1 cut(s)	639
MseI	TTAA	2 cut(s)	230, 836
MspA1I	CMGCKG	1 cut(s)	94
MspI	CCGG	4 cut(s)	23, 185, 651, 791
MspR9I	CCNGG	3 cut(s)	652, 673, 883
MteI	GCGCNGCGC	1 cut(s)	157
MunI	CAATTG	1 cut(s)	376
MvaI	CCWGG	2 cut(s)	673, 883
MvnI	CGCG	1 cut(s)	159
MwoI	GCNNNNNNNGC	2 cut(s)	652, 787
NciI	CCSGG	1 cut(s)	652
NcoI	CCATGG	1 cut(s)	580
NdeII	GATC	3 cut(s)	33, 80, 371
NlaIII	CATG	5 cut(s)	263, 584, 635, 809, 835
NlaIV	GGNNCC	1 cut(s)	880
NmuCI	GTSAC	1 cut(s)	355
NspV	TTCGAA	2 cut(s)	350, 477
PagI	TCATGA	1 cut(s)	805
PaqCI	CACCTGC	1 cut(s)	139
PcsI	WCGNNNNNNNCGW	2 cut(s)	80, 497
PfeI	GAWTC	3 cut(s)	10, 143, 220
Pfl23II	CGTACG	1 cut(s)	138
PflMI	CCANNNNNTGG	2 cut(s)	171, 678
PfoI	TCCNGGA	1 cut(s)	881
PkrI	GCNGC	5 cut(s)	21, 158, 410, 413, 573
PleI	GAGTC	1 cut(s)	36
PpsI	GAGTC	1 cut(s)	36
PpuMI	RGGWCCY	1 cut(s)	847
Psp124BI	GAGCTC	1 cut(s)	245
Psp5II	RGGWCCY	1 cut(s)	847
Psp6I	CCWGG	2 cut(s)	671, 881
PspFI	CCCAGC	1 cut(s)	101
PspGI	CCWGG	2 cut(s)	671, 881
PspLI	CGTACG	1 cut(s)	138
PspN4I	GGNNCC	1 cut(s)	880
PspPI	GGNCC	5 cut(s)	99, 187, 653, 847, 879
PspPPI	RGGWCCY	1 cut(s)	847
PsuI	RGATCY	1 cut(s)	371
RsaI	GTAC	1 cut(s)	140
RsaNI	GTAC	1 cut(s)	139
SacI	GAGCTC	1 cut(s)	245
SaqAI	TTAA	2 cut(s)	230, 836
SatI	GCNGC	5 cut(s)	20, 157, 409, 412, 572
Sau3AI	GATC	3 cut(s)	33, 80, 371
Sau96I	GGNCC	5 cut(s)	99, 187, 653, 847, 879
SchI	GAGTC	1 cut(s)	37
ScrFI	CCNGG	3 cut(s)	652, 673, 883
SduI	GDGCHC	2 cut(s)	245, 518
SfaNI	GCATC	1 cut(s)	658
SfuI	TTCGAA	2 cut(s)	350, 477
SgrAI	CRCCGGYG	1 cut(s)	790
SinI	GGWCC	3 cut(s)	187, 847, 879
SmlI	CTYRAG	1 cut(s)	851
SmoI	CTYRAG	1 cut(s)	851
Sse9I	AATT	8 cut(s)	235, 376, 431, 519, 535, 682, 801, 903
SspMI	CTAG	2 cut(s)	269, 606
SstI	GAGCTC	1 cut(s)	245
StyD4I	CCNGG	3 cut(s)	650, 671, 881
StyI	CCWWGG	1 cut(s)	580
TaaI	ACNGT	1 cut(s)	76
TaiI	ACGT	2 cut(s)	357, 453
TaqI	TCGA	5 cut(s)	83, 223, 350, 477, 483
TasI	AATT	8 cut(s)	235, 376, 431, 519, 535, 682, 801, 903
TauI	GCSGC	3 cut(s)	159, 411, 414
TfiI	GAWTC	3 cut(s)	10, 143, 220
Tru1I	TTAA	2 cut(s)	230, 836
Tru9I	TTAA	2 cut(s)	230, 836
TscAI	CASTG	2 cut(s)	176, 442
TseFI	GTSAC	1 cut(s)	355
TseI	GCWGC	2 cut(s)	19, 571
Tsp45I	GTSAC	1 cut(s)	355
TspDTI	ATGAA	6 cut(s)	54, 276, 471, 512, 732, 794
TspGWI	ACGGA	1 cut(s)	489
TspRI	CASTG	2 cut(s)	176, 442
Van91I	CCANNNNNTGG	2 cut(s)	171, 678
VpaK11BI	GGWCC	3 cut(s)	187, 847, 879
XapI	RAATTY	4 cut(s)	235, 431, 535, 801
XcmI	CCANNNNNNNNNTGG	2 cut(s)	109, 838
XspI	CTAG	2 cut(s)	269, 606

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.