MD14G1149800.v1.1

Sterile alpha motif.

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
Physical Location & Seq
Forward (+)
24284651 .. 24285577
927 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1149800.v1.1.491

Sequence Viewer

Length: 927 bp
ATGGCGGAGATTCAACCGCAGCCGGTGCCTCAGATCAACGGCGGAGGACAGTTTTTGATGGGTTCGTCTGAGACGGTTGGATCGAAGCGACAGCGGAGGCCCAGCGTCCGGTTGGGCGACATCGGAGGAGACCAGCCGTACGATTCGCAGGTGCGCCGCGCCACCAAGCAGTGGAGGCTCCCGCCGGACCACCGCAAAGACGCCAATAAGTCCTCAAAGCCTCGACCTTTAACGAATTTAAGCTCCGTTGGGGAATTCCATGAAACCCTAGACGGCGAAGACAGAGAGGCCAATCTCGATAGTGTTGCCATTGGGAGCTGGAAGGTCAAGGACGCCAAGAAACGGGCTTCGAGCGTCACGAAACGGGTCAGATCCAATTGGGTATCTTCCAAGATCGATGAAGGTGGCGGCGAAGGGGACGAGAAATTCAGTGGAGCGGAGGACGTCGATGATGGGTATCATCGCGATTTTGATGTCGAAAACTCGGAAAGCCCGTTGAAAGAGCGGAGCCCAATTCACAGTTCGGAGAATTTGGGTGTGGATGGGCATGCCAATGGAAGGGAGCTGCTTTACCATGGAAGTAGAAGACCCATTAGGACCAGGATTTCGGAGGGTAGGGATAACCATGATGGTATTGAGCTATCCGGGCCGTCGGATAACGATGCCAGGGATTGGAATTGTAGAGGGACAAGTGGGGTTAGAATTGGGAATGAAGGAAGAGGAAGGTGTGGAGAAGATGGGGTTAGGGTTTGGCTCAATGGGTTAGGGTTAGGGCGGTATGCGCCGGTGTTCGAAATTCATGAGGTGGATGATGAGGTATTGCCCATGTTAACACTGGAGGACCTCAAGGATATGGGAGTAAATGCAGTTGGGTCCAGAAGGAAAATGTATTGTGCAATTCAGAAGCTGGGGAAGGGGTTTTCTTGA

Protein Analysis

309

Amino Acids

33.99

Weight (kDa)

6.28

Isoelectric Point (pI)

50.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAM_1 PF00536 247 - 303 2.6e-13 SAM domain (Sterile alpha motif)
SAM_2 PF07647 251 - 303 2.3e-11 SAM domain (Sterile alpha motif)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 139
AatII GACGTC 1 cut(s) 447
Acc36I ACCTGC 1 cut(s) 139
AccB1I GGYRCC 1 cut(s) 25
AccB7I CCANNNNNTGG 2 cut(s) 171, 672
AccBSI CCGCTC 2 cut(s) 437, 505
AccII CGCG 2 cut(s) 159, 465
AclWI GGATC 2 cut(s) 88, 366
AcsI RAATTY 5 cut(s) 235, 254, 425, 529, 795
AcyI GRCGYC 3 cut(s) 201, 333, 444
AfaI GTAC 1 cut(s) 140
AfiI CCNNNNNNNGG 5 cut(s) 108, 171, 342, 558, 672
AgsI TTSAA 2 cut(s) 14, 499
AjnI CCWGG 2 cut(s) 599, 665
AjuI GAANNNNNNNTTGG 2 cut(s) 505, 537
AluBI AGCT 5 cut(s) 243, 318, 565, 640, 907
AluI AGCT 5 cut(s) 243, 318, 565, 640, 907
Alw26I GTCTC 2 cut(s) 65, 123
AlwI GGATC 2 cut(s) 88, 366
AlwNI CAGNNNCTG 1 cut(s) 907
AoxI GGCC 3 cut(s) 98, 288, 647
ApeKI GCWGC 2 cut(s) 19, 565
ApoI RAATTY 5 cut(s) 235, 254, 425, 529, 795
ArsI GACNNNNNNTTYG 2 cut(s) 589, 621
AspLEI GCGC 3 cut(s) 156, 161, 784
AspS9I GGNCC 6 cut(s) 99, 187, 597, 647, 841, 873
AsuC2I CCSGG 1 cut(s) 646
AsuII TTCGAA 1 cut(s) 792
AvaII GGWCC 4 cut(s) 187, 597, 841, 873
BanI GGYRCC 1 cut(s) 25
BanII GRGCYC 1 cut(s) 512
BbsI GAAGAC 2 cut(s) 285, 592
BbvI GCAGC 2 cut(s) 31, 552
BccI CCATC 5 cut(s) 52, 446, 536, 623, 731
BceAI ACGGC 4 cut(s) 55, 121, 289, 634
BcgI CGANNNNNNTGC 2 cut(s) 287, 321
BciT130I CCWGG 2 cut(s) 601, 667
BcnI CCSGG 1 cut(s) 646
BcoDI GTCTC 2 cut(s) 65, 123
BfaI CTAG 1 cut(s) 269
BfuAI ACCTGC 1 cut(s) 139
BisI GCNGC 4 cut(s) 20, 157, 409, 566
BlsI GCNGC 4 cut(s) 21, 158, 410, 567
Bme1390I CCNGG 3 cut(s) 601, 646, 667
Bme18I GGWCC 4 cut(s) 187, 597, 841, 873
BmgT120I GGNCC 6 cut(s) 99, 187, 597, 647, 841, 873
BmiI GGNNCC 4 cut(s) 27, 179, 509, 874
BmrFI CCNGG 3 cut(s) 601, 646, 667
BmsI GCATC 1 cut(s) 652
BpiI GAAGAC 2 cut(s) 285, 592
BpmI CTGGAG 1 cut(s) 857
Bpu14I TTCGAA 1 cut(s) 792
BpuEI CTTGAG 1 cut(s) 830
BpuMI CCSGG 1 cut(s) 646
Bsa29I ATCGAT 1 cut(s) 396
BsaBI GATNNNNATC 1 cut(s) 456
BsaHI GRCGYC 3 cut(s) 201, 333, 444
BsaI GGTCTC 1 cut(s) 123
BsaJI CCNNGG 2 cut(s) 574, 666
BsaWI WCCGGW 1 cut(s) 108
Bsc4I CCNNNNNNNGG 5 cut(s) 108, 171, 342, 558, 672
Bse118I RCCGGY 2 cut(s) 22, 784
Bse1I ACTGG 1 cut(s) 840
Bse8I GATNNNNATC 1 cut(s) 456
BseBI CCWGG 2 cut(s) 601, 667
BseCI ATCGAT 1 cut(s) 396
BseDI CCNNGG 2 cut(s) 574, 666
BseGI GGATG 2 cut(s) 547, 814
BseJI GATNNNNATC 1 cut(s) 456
BseLI CCNNNNNNNGG 5 cut(s) 108, 171, 342, 558, 672
BseMII CTCAG 2 cut(s) 44, 60
BseNI ACTGG 1 cut(s) 840
BseRI GAGGAG 1 cut(s) 141
BseXI GCAGC 2 cut(s) 31, 552
BseYI CCCAGC 2 cut(s) 101, 907
Bsh1236I CGCG 2 cut(s) 159, 465
BshFI GGCC 3 cut(s) 100, 290, 649
BshNI GGYRCC 1 cut(s) 25
BshVI ATCGAT 1 cut(s) 396
BsiSI CCGG 5 cut(s) 23, 109, 185, 645, 785
BsiWI CGTACG 1 cut(s) 138
BslFI GGGAC 2 cut(s) 431, 700
BslI CCNNNNNNNGG 5 cut(s) 108, 171, 342, 558, 672
BsmAI GTCTC 2 cut(s) 65, 123
BsmBI CGTCTC 1 cut(s) 65
BsmFI GGGAC 2 cut(s) 431, 700
BsnI GGCC 3 cut(s) 100, 290, 649
Bso31I GGTCTC 1 cut(s) 123
Bsp119I TTCGAA 1 cut(s) 792
Bsp1286I GDGCHC 1 cut(s) 512
Bsp143I GATC 4 cut(s) 33, 80, 371, 393
Bsp19I CCATGG 1 cut(s) 574
Bsp68I TCGCGA 1 cut(s) 465
BspANI GGCC 3 cut(s) 100, 290, 649
BspCNI CTCAG 2 cut(s) 43, 61
BspDI ATCGAT 1 cut(s) 396
BspFNI CGCG 2 cut(s) 159, 465
BspHI TCATGA 1 cut(s) 799
BspLI GGNNCC 4 cut(s) 27, 179, 509, 874
BspMI ACCTGC 1 cut(s) 139
BspPI GGATC 2 cut(s) 88, 366
BspT104I TTCGAA 1 cut(s) 792
BspT107I GGYRCC 1 cut(s) 25
BspTNI GGTCTC 1 cut(s) 123
BsrBI CCGCTC 2 cut(s) 437, 505
BsrFI RCCGGY 2 cut(s) 22, 784
BsrI ACTGG 1 cut(s) 840
BssAI RCCGGY 2 cut(s) 22, 784
BssECI CCNNGG 2 cut(s) 574, 666
BssMI GATC 4 cut(s) 33, 80, 371, 393
BssNI GRCGYC 3 cut(s) 201, 333, 444
BssT1I CCWWGG 1 cut(s) 574
Bst2UI CCWGG 2 cut(s) 601, 667
Bst4CI ACNGT 3 cut(s) 51, 76, 521
Bst6I CTCTTC 1 cut(s) 712
BstACI GRCGYC 3 cut(s) 201, 333, 444
BstAPI GCANNNNNTGC 1 cut(s) 25
BstBI TTCGAA 1 cut(s) 792
BstC8I GCNNGC 1 cut(s) 549
BstDEI CTNAG 2 cut(s) 30, 69
BstDSI CCRYGG 1 cut(s) 574
BstF5I GGATG 2 cut(s) 547, 814
BstFNI CGCG 2 cut(s) 159, 465
BstHHI GCGC 3 cut(s) 156, 161, 784
BstKTI GATC 4 cut(s) 36, 83, 374, 396
BstMAI GTCTC 2 cut(s) 65, 123
BstMBI GATC 4 cut(s) 33, 80, 371, 393
BstMWI GCNNNNNNNGC 4 cut(s) 25, 175, 646, 781
BstNI CCWGG 2 cut(s) 601, 667
BstNSI RCATGY 1 cut(s) 551
BstSCI CCNGG 3 cut(s) 599, 644, 665
BstUI CGCG 2 cut(s) 159, 465
BstV1I GCAGC 2 cut(s) 31, 552
BstV2I GAAGAC 2 cut(s) 285, 592
BstX2I RGATCY 1 cut(s) 371
BstYI RGATCY 1 cut(s) 371
Bsu15I ATCGAT 1 cut(s) 396
BsuRI GGCC 3 cut(s) 100, 290, 649
BsuTUI ATCGAT 1 cut(s) 396
BtgI CCRYGG 1 cut(s) 574
BtgZI GCGATG 1 cut(s) 446
BtsCI GGATG 2 cut(s) 547, 814
BtsI GCAGTG 1 cut(s) 176
BtsIMutI CAGTG 3 cut(s) 176, 436, 833
BtuMI TCGCGA 1 cut(s) 465
BveI ACCTGC 1 cut(s) 139
Cac8I GCNNGC 1 cut(s) 549
CaiI CAGNNNCTG 1 cut(s) 907
CciI TCATGA 1 cut(s) 799
CfoI GCGC 3 cut(s) 156, 161, 784
Cfr10I RCCGGY 2 cut(s) 22, 784
Cfr13I GGNCC 6 cut(s) 99, 187, 597, 647, 841, 873
ClaI ATCGAT 1 cut(s) 396
CseI GACGC 4 cut(s) 94, 209, 341, 343
Csp6I GTAC 1 cut(s) 139
CviAII CATG 6 cut(s) 260, 548, 575, 626, 800, 826
CviQI GTAC 1 cut(s) 139
DdeI CTNAG 2 cut(s) 30, 69
DpnI GATC 4 cut(s) 35, 82, 373, 395
DpnII GATC 4 cut(s) 33, 80, 371, 393
Eam1104I CTCTTC 1 cut(s) 712
EarI CTCTTC 1 cut(s) 712
EciI GGCGGA 2 cut(s) 20, 57
Eco130I CCWWGG 1 cut(s) 574
Eco24I GRGCYC 1 cut(s) 512
Eco31I GGTCTC 1 cut(s) 123
Eco47I GGWCC 4 cut(s) 187, 597, 841, 873
EcoO109I RGGNCCY 1 cut(s) 841
EcoRI GAATTC 1 cut(s) 254
EcoRII CCWGG 2 cut(s) 599, 665
EcoT14I CCWWGG 1 cut(s) 574
EcoT38I GRGCYC 1 cut(s) 512
ErhI CCWWGG 1 cut(s) 574
Esp3I CGTCTC 1 cut(s) 65
FaeI CATG 6 cut(s) 263, 551, 578, 629, 803, 829
FaiI YATR 8 cut(s) 261, 549, 576, 627, 780, 801, 827, 854
FaqI GGGAC 2 cut(s) 431, 700
FatI CATG 6 cut(s) 259, 547, 574, 625, 799, 825
FauI CCCGC 1 cut(s) 189
Fnu4HI GCNGC 4 cut(s) 20, 157, 409, 566
FokI GGATG 2 cut(s) 554, 821
FriOI GRGCYC 1 cut(s) 512
Fsp4HI GCNGC 4 cut(s) 20, 157, 409, 566
FspBI CTAG 1 cut(s) 269
GlaI GCGC 3 cut(s) 155, 160, 783
GluI GCNGC 4 cut(s) 20, 157, 409, 566
GsaI CCCAGC 2 cut(s) 105, 911
GsuI CTGGAG 1 cut(s) 857
HaeIII GGCC 3 cut(s) 100, 290, 649
HapII CCGG 5 cut(s) 23, 109, 185, 645, 785
HgaI GACGC 4 cut(s) 94, 209, 341, 343
HhaI GCGC 3 cut(s) 156, 161, 784
Hin1I GRCGYC 3 cut(s) 201, 333, 444
Hin1II CATG 6 cut(s) 263, 551, 578, 629, 803, 829
Hin6I GCGC 3 cut(s) 154, 159, 782
HinP1I GCGC 3 cut(s) 154, 159, 782
HincII GTYRAC 1 cut(s) 831
HindII GTYRAC 1 cut(s) 831
HinfI GANTC 2 cut(s) 10, 143
HpaI GTTAAC 1 cut(s) 831
HpaII CCGG 5 cut(s) 23, 109, 185, 645, 785
Hpy166II GTNNAC 1 cut(s) 831
Hpy188I TCNGA 9 cut(s) 33, 70, 125, 371, 487, 526, 610, 655, 903
Hpy188III TCNNGA 6 cut(s) 296, 358, 464, 800, 876, 924
Hpy8I GTNNAC 1 cut(s) 831
Hpy99I CGWCG 2 cut(s) 449, 655
HpyAV CCTTC 8 cut(s) 316, 395, 407, 552, 707, 717, 873, 907
HpyCH4III ACNGT 3 cut(s) 51, 76, 521
HpyCH4IV ACGT 1 cut(s) 444
HpyCH4V TGCA 2 cut(s) 866, 896
HpyF10VI GCNNNNNNNGC 4 cut(s) 25, 175, 646, 781
HpyF3I CTNAG 2 cut(s) 30, 69
HpySE526I ACGT 1 cut(s) 444
Hsp92I GRCGYC 3 cut(s) 201, 333, 444
Hsp92II CATG 6 cut(s) 263, 551, 578, 629, 803, 829
HspAI GCGC 3 cut(s) 154, 159, 782
KspAI GTTAAC 1 cut(s) 831
Kzo9I GATC 4 cut(s) 33, 80, 371, 393
LmnI GCTCC 6 cut(s) 183, 248, 315, 434, 507, 562
Lsp1109I GCAGC 2 cut(s) 31, 552
LweI GCATC 1 cut(s) 652
MaeI CTAG 1 cut(s) 269
MaeII ACGT 1 cut(s) 444
MaeIII GTNAC 1 cut(s) 355
MalI GATC 4 cut(s) 35, 82, 373, 395
MbiI CCGCTC 2 cut(s) 437, 505
MboI GATC 4 cut(s) 33, 80, 371, 393
MboII GAAGA 5 cut(s) 290, 378, 597, 729, 746
MfeI CAATTG 1 cut(s) 376
MflI RGATCY 1 cut(s) 371
MhlI GDGCHC 1 cut(s) 512
MmeI TCCRAC 2 cut(s) 58, 633
MseI TTAA 3 cut(s) 230, 239, 830
MslI CAYNNNNRTG 1 cut(s) 552
MspA1I CMGCKG 1 cut(s) 94
MspI CCGG 5 cut(s) 23, 109, 185, 645, 785
MspR9I CCNGG 3 cut(s) 601, 646, 667
MteI GCGCNGCGC 1 cut(s) 157
MunI CAATTG 1 cut(s) 376
MvaI CCWGG 2 cut(s) 601, 667
MvnI CGCG 2 cut(s) 159, 465
MwoI GCNNNNNNNGC 4 cut(s) 25, 175, 646, 781
NciI CCSGG 1 cut(s) 646
NcoI CCATGG 1 cut(s) 574
NdeII GATC 4 cut(s) 33, 80, 371, 393
NlaIII CATG 6 cut(s) 263, 551, 578, 629, 803, 829
NlaIV GGNNCC 4 cut(s) 27, 179, 509, 874
NmuCI GTSAC 1 cut(s) 355
NruI TCGCGA 1 cut(s) 465
NspI RCATGY 1 cut(s) 551
NspV TTCGAA 1 cut(s) 792
PaeI GCATGC 1 cut(s) 551
PagI TCATGA 1 cut(s) 799
PaqCI CACCTGC 1 cut(s) 139
PcsI WCGNNNNNNNCGW 3 cut(s) 80, 356, 491
PfeI GAWTC 2 cut(s) 10, 143
Pfl23II CGTACG 1 cut(s) 138
PflMI CCANNNNNTGG 2 cut(s) 171, 672
PkrI GCNGC 4 cut(s) 21, 158, 410, 567
PpuMI RGGWCCY 1 cut(s) 841
Psp5II RGGWCCY 1 cut(s) 841
Psp6I CCWGG 2 cut(s) 599, 665
PspFI CCCAGC 2 cut(s) 101, 907
PspGI CCWGG 2 cut(s) 599, 665
PspLI CGTACG 1 cut(s) 138
PspN4I GGNNCC 4 cut(s) 27, 179, 509, 874
PspPI GGNCC 6 cut(s) 99, 187, 597, 647, 841, 873
PspPPI RGGWCCY 1 cut(s) 841
PstNI CAGNNNCTG 1 cut(s) 907
PsuI RGATCY 1 cut(s) 371
RruI TCGCGA 1 cut(s) 465
RsaI GTAC 1 cut(s) 140
RsaNI GTAC 1 cut(s) 139
RseI CAYNNNNRTG 1 cut(s) 552
SaqAI TTAA 3 cut(s) 230, 239, 830
SatI GCNGC 4 cut(s) 20, 157, 409, 566
Sau3AI GATC 4 cut(s) 33, 80, 371, 393
Sau96I GGNCC 6 cut(s) 99, 187, 597, 647, 841, 873
ScrFI CCNGG 3 cut(s) 601, 646, 667
SduI GDGCHC 1 cut(s) 512
SfaNI GCATC 1 cut(s) 652
SfuI TTCGAA 1 cut(s) 792
SgrAI CRCCGGYG 1 cut(s) 784
SinI GGWCC 4 cut(s) 187, 597, 841, 873
SmiMI CAYNNNNRTG 1 cut(s) 552
SmlI CTYRAG 1 cut(s) 845
SmoI CTYRAG 1 cut(s) 845
SphI GCATGC 1 cut(s) 551
SspMI CTAG 1 cut(s) 269
StyD4I CCNGG 3 cut(s) 599, 644, 665
StyI CCWWGG 1 cut(s) 574
TaaI ACNGT 3 cut(s) 51, 76, 521
TaiI ACGT 1 cut(s) 447
TaqI TCGA 8 cut(s) 83, 223, 297, 350, 396, 447, 477, 792
TauI GCSGC 2 cut(s) 159, 411
TfiI GAWTC 2 cut(s) 10, 143
Tru1I TTAA 3 cut(s) 230, 239, 830
Tru9I TTAA 3 cut(s) 230, 239, 830
TscAI CASTG 3 cut(s) 176, 436, 840
TseFI GTSAC 1 cut(s) 355
TseI GCWGC 2 cut(s) 19, 565
Tsp45I GTSAC 1 cut(s) 355
TspDTI ATGAA 4 cut(s) 276, 414, 726, 788
TspGWI ACGGA 1 cut(s) 235
TspRI CASTG 3 cut(s) 176, 436, 840
Van91I CCANNNNNTGG 2 cut(s) 171, 672
VpaK11BI GGWCC 4 cut(s) 187, 597, 841, 873
XapI RAATTY 5 cut(s) 235, 254, 425, 529, 795
XceI RCATGY 1 cut(s) 551
XcmI CCANNNNNNNNNTGG 2 cut(s) 109, 832
XspI CTAG 1 cut(s) 269
ZraI GACGTC 1 cut(s) 445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.