Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0003205

Physical Location & Seq

Genomic Coordinates Forward (+)

7693219 .. 7694118

Gene Structure 900 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG102900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGCGGAGATACAGCCACCGGAGATCAACGGCGGGCAATTCATGATGGGTTCGTTGGAGACGGTGGGGGCGAAGCGGCAGCGGAGGCCCAGCGTCCGATTGGGCGAGATCGGAGGAGACCAGCCGTACGATTCGAACCCGCGGCGGGCGACGAAGCAGTGGAGGCTACCTCCGATGGACCACCACCACCGGAACAAGGAGTCGAGTAAGTCGTCAAAGACTCGGCCTTTGGTGAATTTGAGCTCCGGCGGGGAGTTCGATGAAACCCTAGAGCGGGCGGAGAGAGAGGGCAACCTCGATAGTGTCGCCATTGGGAGCTGGAAGGTGAAAGAGACCAAGAAAAGAGCTTCGAGCGCCACGAAGAGGGTCAGATCCAATTGGGTCGCGGCCAAGATTGACGAGGGCGGCGGCGGCGGCGGCGGCGGCGATGAGAAGTTCAGCGGCGGCGAGGATGGGGAAGATGGGTACCGGGAATTCGAACCCGAAGAGTCGGAAAGCCCGTTGAAAGAGCAGAGCCCAATTCATTCCTCGGAGAATTTGGAAAGAGAGGTGCTTTACCATGGGAGTAGGAGACCAATTAGGACTAGGGTTTTGGATCATGATGGTGTTGAGCTATCCGGGCCGTCGGAGAATGATGCCAGGGAGTGGAATGGGAGAGGGACTAGTGGGGACAGGAATGGGAATGAAGGGAGAGTGAGGTGTGGGGAAGATGGGGTTAGGGTTTGGCTCAATGGCTTGGGGTTGAGTCGGTATGCCCCAGTGTTCGAAATTCATGAGGTGGATGATGAAGTGTTGCCAATGTTAACTTTGGAGGACCTCAAGGACATGGGGATAAATGCAGTCGGGTCCAGAAGGAAAATGTACTGTGCTATTCAGAAGCTTGGAAAGGGTTTTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0007275 GO:0007368 GO:0007389 GO:0007507 GO:0008150 GO:0009799 GO:0009855 GO:0009966 GO:0009968 GO:0010646 GO:0010648 GO:0023051 GO:0023057 GO:0030111 GO:0030178 GO:0032501 GO:0032502 GO:0048513 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0060828 GO:0065007 GO:0072359 GO:0090090 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAM_1 SAM_2

Protein Analysis

299

Amino Acids

33.1

Weight (kDa)

5.92

Isoelectric Point (pI)

55.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAM_1	PF00536	238 - 294	3.2e-13	SAM domain (Sterile alpha motif)
SAM_2	PF07647	242 - 294	1.3e-11	SAM domain (Sterile alpha motif)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48800 AT5G23680
fragaria_vesca	FvH4_4g22930 FvH4_5g09120 FvH4_5g09120
malus_domestica	MD04G1000300.v1.1 MD06G1133400.v1.1 MD13G1128000.v1.1 MD13G1128300.v1.1 MD14G1149800.v1.1 MD16G1128400.v1.1
prunus_persica	Prupe.5G144600_v2.0.a1 Prupe.5G144600_v2.0.a1
pyrus_communis	pycom13g11100 pycom14g12450 pycom16g10890
rosa_chinensis	RchiOBHm_Chr4g0429181 RchiOBHm_Chr7g0189071
rosa_laevigata	RLG00000004635 RLG00000007089
rosa_multiflora	Rmu_co7993242.1_g000001 Rmu_co8485617.1_g000001 Rmu_sc0004290.1_g000008 Rmu_sc0004872.1_g000001
rosa_rugosa	Rorug04G0233700 Rorug06G0496000
rosa_samantha	Rh4AG289600 Rh4BG295600 Rh4CG311100 Rh4DG292500 Rh7AG100400 Rh7BG102900 Rh7CG104400 Rh7DG102400
rosa_wichuraiana	Rw4G025090 Rw5G022550 Rw7G008680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	465
AccB1I	GGYRCC	1 cut(s)	465
AccB7I	CCANNNNNTGG	1 cut(s)	645
AccBSI	CCGCTC	1 cut(s)	274
AccII	CGCG	2 cut(s)	142, 386
AclWI	GGATC	2 cut(s)	366, 603
AcoI	YGGCCR	1 cut(s)	387
AcsI	RAATTY	4 cut(s)	235, 473, 535, 768
AfaI	GTAC	3 cut(s)	128, 467, 863
AfiI	CCNNNNNNNGG	6 cut(s)	145, 196, 273, 274, 363, 645
AgsI	TTSAA	1 cut(s)	505
AhlI	ACTAGT	1 cut(s)	662
AjnI	CCWGG	1 cut(s)	638
AluBI	AGCT	5 cut(s)	243, 318, 347, 613, 880
AluI	AGCT	5 cut(s)	243, 318, 347, 613, 880
Alw21I	GWGCWC	1 cut(s)	245
Alw26I	GTCTC	4 cut(s)	53, 111, 326, 565
AlwI	GGATC	2 cut(s)	366, 603
AoxI	GGCC	4 cut(s)	86, 224, 387, 620
ApeKI	GCWGC	1 cut(s)	79
ApoI	RAATTY	4 cut(s)	235, 473, 535, 768
ArsI	GACNNNNNNTTYG	4 cut(s)	211, 243, 574, 606
Asp718I	GGTACC	1 cut(s)	465
AspLEI	GCGC	1 cut(s)	356
AspS9I	GGNCC	5 cut(s)	87, 178, 620, 814, 846
AsuC2I	CCSGG	2 cut(s)	470, 619
AsuHPI	GGTGA	2 cut(s)	244, 337
AsuII	TTCGAA	3 cut(s)	134, 477, 765
AvaII	GGWCC	3 cut(s)	178, 814, 846
BanI	GGYRCC	1 cut(s)	465
BanII	GRGCYC	2 cut(s)	245, 518
Bbv12I	GWGCWC	1 cut(s)	245
BbvI	GCAGC	1 cut(s)	91
BccI	CCATC	6 cut(s)	40, 169, 446, 455, 596, 704
BceAI	ACGGC	3 cut(s)	46, 109, 607
BciT130I	CCWGG	1 cut(s)	640
BcnI	CCSGG	2 cut(s)	470, 619
BcoDI	GTCTC	4 cut(s)	53, 111, 326, 565
BcuI	ACTAGT	1 cut(s)	662
BfaI	CTAG	3 cut(s)	269, 585, 663
BfoI	RGCGCY	1 cut(s)	357
Bme1390I	CCNGG	3 cut(s)	470, 619, 640
Bme18I	GGWCC	3 cut(s)	178, 814, 846
BmgT120I	GGNCC	5 cut(s)	87, 178, 620, 814, 846
BmiI	GGNNCC	2 cut(s)	467, 847
BmrFI	CCNGG	3 cut(s)	470, 619, 640
BmrI	ACTGGG	1 cut(s)	752
BmsI	GCATC	1 cut(s)	625
BmuI	ACTGGG	1 cut(s)	752
BplI	GAGNNNNNCTC	2 cut(s)	154, 186
Bpu14I	TTCGAA	3 cut(s)	134, 477, 765
BpuEI	CTTGAG	1 cut(s)	803
BpuMI	CCSGG	2 cut(s)	470, 619
BsaI	GGTCTC	3 cut(s)	111, 326, 565
BsaJI	CCNNGG	4 cut(s)	140, 528, 559, 639
BsaWI	WCCGGW	2 cut(s)	19, 189
Bsc4I	CCNNNNNNNGG	6 cut(s)	145, 196, 273, 274, 363, 645
Bse1I	ACTGG	1 cut(s)	758
BseBI	CCWGG	1 cut(s)	640
BseDI	CCNNGG	4 cut(s)	140, 528, 559, 639
BseGI	GGATG	2 cut(s)	457, 787
BseLI	CCNNNNNNNGG	6 cut(s)	145, 196, 273, 274, 363, 645
BseNI	ACTGG	1 cut(s)	758
BseRI	GAGGAG	1 cut(s)	129
BseXI	GCAGC	1 cut(s)	91
BseYI	CCCAGC	1 cut(s)	89
Bsh1236I	CGCG	2 cut(s)	142, 386
BshFI	GGCC	4 cut(s)	88, 226, 389, 622
BshNI	GGYRCC	1 cut(s)	465
BsiHKAI	GWGCWC	1 cut(s)	245
BsiSI	CCGG	5 cut(s)	20, 190, 246, 469, 618
BsiWI	CGTACG	1 cut(s)	126
BslFI	GGGAC	2 cut(s)	673, 683
BslI	CCNNNNNNNGG	6 cut(s)	145, 196, 273, 274, 363, 645
BsmAI	GTCTC	4 cut(s)	53, 111, 326, 565
BsmBI	CGTCTC	1 cut(s)	53
BsmFI	GGGAC	2 cut(s)	673, 683
BsnI	GGCC	4 cut(s)	88, 226, 389, 622
Bso31I	GGTCTC	3 cut(s)	111, 326, 565
Bsp119I	TTCGAA	3 cut(s)	134, 477, 765
Bsp1286I	GDGCHC	2 cut(s)	245, 518
Bsp143I	GATC	4 cut(s)	24, 108, 371, 595
Bsp19I	CCATGG	1 cut(s)	559
BspANI	GGCC	4 cut(s)	88, 226, 389, 622
BspFNI	CGCG	2 cut(s)	142, 386
BspHI	TCATGA	3 cut(s)	42, 598, 772
BspLI	GGNNCC	2 cut(s)	467, 847
BspPI	GGATC	2 cut(s)	366, 603
BspT104I	TTCGAA	3 cut(s)	134, 477, 765
BspT107I	GGYRCC	1 cut(s)	465
BspTNI	GGTCTC	3 cut(s)	111, 326, 565
BsrBI	CCGCTC	1 cut(s)	274
BsrI	ACTGG	1 cut(s)	758
BssECI	CCNNGG	4 cut(s)	140, 528, 559, 639
BssMI	GATC	4 cut(s)	24, 108, 371, 595
BssT1I	CCWWGG	1 cut(s)	559
Bst2UI	CCWGG	1 cut(s)	640
Bst4CI	ACNGT	2 cut(s)	64, 866
Bst6I	CTCTTC	2 cut(s)	356, 480
BstBI	TTCGAA	3 cut(s)	134, 477, 765
BstC8I	GCNNGC	3 cut(s)	35, 147, 276
BstDSI	CCRYGG	2 cut(s)	140, 559
BstF5I	GGATG	2 cut(s)	457, 787
BstFNI	CGCG	2 cut(s)	142, 386
BstH2I	RGCGCY	1 cut(s)	357
BstHHI	GCGC	1 cut(s)	356
BstKTI	GATC	4 cut(s)	27, 111, 374, 598
BstMAI	GTCTC	4 cut(s)	53, 111, 326, 565
BstMBI	GATC	4 cut(s)	24, 108, 371, 595
BstMWI	GCNNNNNNNGC	9 cut(s)	85, 163, 353, 411, 414, 417, 420, 423, 619
BstNI	CCWGG	1 cut(s)	640
BstSCI	CCNGG	3 cut(s)	468, 617, 638
BstUI	CGCG	2 cut(s)	142, 386
BstV1I	GCAGC	1 cut(s)	91
BstX2I	RGATCY	1 cut(s)	371
BstYI	RGATCY	1 cut(s)	371
BsuRI	GGCC	4 cut(s)	88, 226, 389, 622
BtgI	CCRYGG	2 cut(s)	140, 559
BtgZI	GCGATG	1 cut(s)	441
BtsCI	GGATG	2 cut(s)	457, 787
BtsI	GCAGTG	1 cut(s)	164
BtsIMutI	CAGTG	2 cut(s)	164, 765
Cac8I	GCNNGC	3 cut(s)	35, 147, 276
CciI	TCATGA	3 cut(s)	42, 598, 772
CfoI	GCGC	1 cut(s)	356
Cfr13I	GGNCC	5 cut(s)	87, 178, 620, 814, 846
Cfr42I	CCGCGG	1 cut(s)	143
CseI	GACGC	1 cut(s)	82
Csp6I	GTAC	3 cut(s)	127, 466, 862
CviAII	CATG	5 cut(s)	43, 560, 599, 773, 826
CviQI	GTAC	3 cut(s)	127, 466, 862
DpnI	GATC	4 cut(s)	26, 110, 373, 597
DpnII	GATC	4 cut(s)	24, 108, 371, 595
EaeI	YGGCCR	1 cut(s)	387
Eam1104I	CTCTTC	2 cut(s)	356, 480
EarI	CTCTTC	2 cut(s)	356, 480
EciI	GGCGGA	2 cut(s)	20, 293
Ecl136II	GAGCTC	1 cut(s)	243
Eco130I	CCWWGG	1 cut(s)	559
Eco24I	GRGCYC	2 cut(s)	245, 518
Eco31I	GGTCTC	3 cut(s)	111, 326, 565
Eco47I	GGWCC	3 cut(s)	178, 814, 846
Eco53kI	GAGCTC	1 cut(s)	243
EcoICRI	GAGCTC	1 cut(s)	243
EcoO109I	RGGNCCY	1 cut(s)	814
EcoRI	GAATTC	1 cut(s)	473
EcoRII	CCWGG	1 cut(s)	638
EcoT14I	CCWWGG	1 cut(s)	559
EcoT38I	GRGCYC	2 cut(s)	245, 518
ErhI	CCWWGG	1 cut(s)	559
Esp3I	CGTCTC	1 cut(s)	53
FaeI	CATG	5 cut(s)	46, 563, 602, 776, 829
FaiI	YATR	6 cut(s)	44, 561, 600, 753, 774, 827
FaqI	GGGAC	2 cut(s)	673, 683
FatI	CATG	5 cut(s)	42, 559, 598, 772, 825
FauI	CCCGC	5 cut(s)	26, 138, 147, 242, 267
FokI	GGATG	2 cut(s)	464, 794
FriOI	GRGCYC	2 cut(s)	245, 518
FspBI	CTAG	3 cut(s)	269, 585, 663
GlaI	GCGC	1 cut(s)	355
GsaI	CCCAGC	1 cut(s)	93
HaeII	RGCGCY	1 cut(s)	357
HaeIII	GGCC	4 cut(s)	88, 226, 389, 622
HapII	CCGG	5 cut(s)	20, 190, 246, 469, 618
HgaI	GACGC	1 cut(s)	82
HhaI	GCGC	1 cut(s)	356
Hin1II	CATG	5 cut(s)	46, 563, 602, 776, 829
Hin6I	GCGC	1 cut(s)	354
HinP1I	GCGC	1 cut(s)	354
HincII	GTYRAC	1 cut(s)	804
HindII	GTYRAC	1 cut(s)	804
HindIII	AAGCTT	1 cut(s)	878
HinfI	GANTC	5 cut(s)	131, 200, 220, 488, 745
HpaI	GTTAAC	1 cut(s)	804
HpaII	CCGG	5 cut(s)	20, 190, 246, 469, 618
HphI	GGTGA	2 cut(s)	244, 337
Hpy166II	GTNNAC	1 cut(s)	804
Hpy188I	TCNGA	8 cut(s)	98, 113, 174, 371, 493, 532, 628, 876
Hpy188III	TCNNGA	5 cut(s)	43, 599, 773, 849, 897
Hpy8I	GTNNAC	1 cut(s)	804
Hpy99I	CGWCG	2 cut(s)	154, 628
HpyAV	CCTTC	3 cut(s)	316, 680, 846
HpyCH4III	ACNGT	2 cut(s)	64, 866
HpyCH4V	TGCA	1 cut(s)	839
HpyF10VI	GCNNNNNNNGC	9 cut(s)	85, 163, 353, 411, 414, 417, 420, 423, 619
Hsp92II	CATG	5 cut(s)	46, 563, 602, 776, 829
HspAI	GCGC	1 cut(s)	354
KpnI	GGTACC	1 cut(s)	469
KspAI	GTTAAC	1 cut(s)	804
KspI	CCGCGG	1 cut(s)	143
Kzo9I	GATC	4 cut(s)	24, 108, 371, 595
LmnI	GCTCC	2 cut(s)	248, 315
Lsp1109I	GCAGC	1 cut(s)	91
LweI	GCATC	1 cut(s)	625
MaeI	CTAG	3 cut(s)	269, 585, 663
MalI	GATC	4 cut(s)	26, 110, 373, 597
MbiI	CCGCTC	1 cut(s)	274
MboI	GATC	4 cut(s)	24, 108, 371, 595
MboII	GAAGA	4 cut(s)	373, 470, 497, 719
MfeI	CAATTG	1 cut(s)	376
MflI	RGATCY	1 cut(s)	371
MhlI	GDGCHC	2 cut(s)	245, 518
MluCI	AATT	8 cut(s)	38, 235, 376, 473, 519, 535, 576, 768
MlyI	GAGTC	4 cut(s)	209, 214, 497, 754
MmeI	TCCRAC	3 cut(s)	36, 471, 606
MseI	TTAA	1 cut(s)	803
MslI	CAYNNNNRTG	1 cut(s)	603
MspA1I	CMGCKG	3 cut(s)	82, 142, 441
MspI	CCGG	5 cut(s)	20, 190, 246, 469, 618
MspR9I	CCNGG	3 cut(s)	470, 619, 640
MunI	CAATTG	1 cut(s)	376
MvaI	CCWGG	1 cut(s)	640
MvnI	CGCG	2 cut(s)	142, 386
MwoI	GCNNNNNNNGC	9 cut(s)	85, 163, 353, 411, 414, 417, 420, 423, 619
NciI	CCSGG	2 cut(s)	470, 619
NcoI	CCATGG	1 cut(s)	559
NdeII	GATC	4 cut(s)	24, 108, 371, 595
NlaIII	CATG	5 cut(s)	46, 563, 602, 776, 829
NlaIV	GGNNCC	2 cut(s)	467, 847
NmeAIII	GCCGAG	1 cut(s)	202
NspV	TTCGAA	3 cut(s)	134, 477, 765
PagI	TCATGA	3 cut(s)	42, 598, 772
PcsI	WCGNNNNNNNCGW	4 cut(s)	68, 209, 356, 497
PfeI	GAWTC	1 cut(s)	131
Pfl23II	CGTACG	1 cut(s)	126
PflMI	CCANNNNNTGG	1 cut(s)	645
PleI	GAGTC	4 cut(s)	208, 214, 496, 753
PpsI	GAGTC	4 cut(s)	208, 214, 496, 753
PpuMI	RGGWCCY	1 cut(s)	814
Psp124BI	GAGCTC	1 cut(s)	245
Psp5II	RGGWCCY	1 cut(s)	814
Psp6I	CCWGG	1 cut(s)	638
PspFI	CCCAGC	1 cut(s)	89
PspGI	CCWGG	1 cut(s)	638
PspLI	CGTACG	1 cut(s)	126
PspN4I	GGNNCC	2 cut(s)	467, 847
PspPI	GGNCC	5 cut(s)	87, 178, 620, 814, 846
PspPPI	RGGWCCY	1 cut(s)	814
PsuI	RGATCY	1 cut(s)	371
RsaI	GTAC	3 cut(s)	128, 467, 863
RsaNI	GTAC	3 cut(s)	127, 466, 862
RseI	CAYNNNNRTG	1 cut(s)	603
SacI	GAGCTC	1 cut(s)	245
SacII	CCGCGG	1 cut(s)	143
SaqAI	TTAA	1 cut(s)	803
Sau3AI	GATC	4 cut(s)	24, 108, 371, 595
Sau96I	GGNCC	5 cut(s)	87, 178, 620, 814, 846
SchI	GAGTC	4 cut(s)	209, 214, 497, 754
ScrFI	CCNGG	3 cut(s)	470, 619, 640
SduI	GDGCHC	2 cut(s)	245, 518
SfaNI	GCATC	1 cut(s)	625
Sfr303I	CCGCGG	1 cut(s)	143
SfuI	TTCGAA	3 cut(s)	134, 477, 765
SgrBI	CCGCGG	1 cut(s)	143
SinI	GGWCC	3 cut(s)	178, 814, 846
SmiMI	CAYNNNNRTG	1 cut(s)	603
SmlI	CTYRAG	1 cut(s)	818
SmoI	CTYRAG	1 cut(s)	818
SpeI	ACTAGT	1 cut(s)	662
Sse9I	AATT	8 cut(s)	38, 235, 376, 473, 519, 535, 576, 768
SspMI	CTAG	3 cut(s)	269, 585, 663
SstI	GAGCTC	1 cut(s)	245
StyD4I	CCNGG	3 cut(s)	468, 617, 638
StyI	CCWWGG	1 cut(s)	559
TaaI	ACNGT	2 cut(s)	64, 866
TaqI	TCGA	7 cut(s)	134, 203, 258, 297, 350, 477, 765
TasI	AATT	8 cut(s)	38, 235, 376, 473, 519, 535, 576, 768
TatI	WGTACW	1 cut(s)	861
TfiI	GAWTC	1 cut(s)	131
Tru1I	TTAA	1 cut(s)	803
Tru9I	TTAA	1 cut(s)	803
TscAI	CASTG	2 cut(s)	164, 765
TseI	GCWGC	1 cut(s)	79
TspDTI	ATGAA	6 cut(s)	31, 276, 512, 699, 761, 801
TspRI	CASTG	2 cut(s)	164, 765
Van91I	CCANNNNNTGG	1 cut(s)	645
VpaK11BI	GGWCC	3 cut(s)	178, 814, 846
XapI	RAATTY	4 cut(s)	235, 473, 535, 768
XcmI	CCANNNNNNNNNTGG	1 cut(s)	97
XspI	CTAG	3 cut(s)	269, 585, 663

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.