MD13G1128000.v1.1

Sterile alpha motif.

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Reverse (-)
9699444 .. 9701989
2546 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1128000.v1.1.491

Sequence Viewer

Length: 894 bp
ATGGCAGCTGAGCTACAGCCACCGGAAGCTCCAATCACCGCCGGCCCGACAATTCCAGCCACCACAACGACACAGCTGATAAATACAGAAACATCCTTAACTGCCATAACGGCAATAGCAACCACAACGGCCGTACACGCCGCGGAGAACCACGGCCAATTGGGCCCCAAACGGCAGCGACGCCCCAGCGTCCGATTAGGCGAGATCGGCGACCAGCCTGCCGCTACTGGCGCATTTGAATCACATATGCGACGAGCCAGGCCCGGCTGGAGGCTCCCCAAGGACTCCAAATCGGTCAAGGCCCGGTCAATCATCAACCTCGTCAACGGCAACGAGTCCAACGAAATGACGCCGCCCGATGAGAGGAACCAAAATGGCGACGGAGGGTTCGAGTTCGGGAGCCGGAGAGTCAAGGCGAAGCGAGCCACGGGGACCAAGAGGATCCGATCGAATTGGGCTTCCAATTCGAAGCTCGACGACGGCGATAGCAGAGAGGAGGGAGGCGAGTGGTTCAGCGCGGATCCCGATCAGGATAGTCCGGTGAGGGGCAGCACTCCGGTGAACTCGGGGGACGACGCGGGGGAGGATATGTGGGATGGGCAGAGGAGGATGGCAGGAAATTGGGCTAGGGCGTCGGTGAGCAGGGAGAACGATGCCGTTGAGGCGGATAACATGCCGGAGTCGAATTGGAGTGGAGTGAGGTCGTGGCTGATAGAATTGGGGCTGAGCCGGTACACGCCGGTGTTCGAGATACACGAGGTGGACGACGAGGTGCTGCCGATGCTGACGTTGGAGGATCTTAAGGATATGGGTATTAACGCCGTCGGTTCACGGCGGAAAATGTACGCCGCCATCCAGAAGCTCCGGAAGGGGTTCTCGAGGAAAACTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

298

Amino Acids

32.54

Weight (kDa)

6.17

Isoelectric Point (pI)

51.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAM_1 PF00536 232 - 289 3.6e-13 SAM domain (Sterile alpha motif)
SAM_2 PF07647 233 - 289 3.1e-13 SAM domain (Sterile alpha motif)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 143, 518, 578
AccIII TCCGGA 1 cut(s) 864
AclWI GGATC 5 cut(s) 436, 449, 515, 528, 804
AcoI YGGCCR 2 cut(s) 129, 154
AcyI GRCGYC 3 cut(s) 181, 350, 632
AdeI CACNNNGTG 1 cut(s) 760
AfaI GTAC 3 cut(s) 135, 734, 845
AfiI CCNNNNNNNGG 3 cut(s) 270, 363, 545
AflII CTTAAG 1 cut(s) 800
AgsI TTSAA 1 cut(s) 239
AjnI CCWGG 1 cut(s) 257
AleI CACNNNNGTG 2 cut(s) 557, 740
AluBI AGCT 6 cut(s) 8, 13, 29, 76, 472, 862
AluI AGCT 6 cut(s) 8, 13, 29, 76, 472, 862
AlwI GGATC 5 cut(s) 436, 449, 515, 528, 804
Ama87I CYCGRG 2 cut(s) 565, 877
Aor13HI TCCGGA 1 cut(s) 864
AoxI GGCC 6 cut(s) 43, 129, 154, 163, 260, 300
ApaI GGGCCC 1 cut(s) 167
ApeKI GCWGC 4 cut(s) 5, 175, 549, 775
ArsI GACNNNNNNTTYG 2 cut(s) 371, 403
Asp700I GAANNNNTTC 1 cut(s) 872
AspLEI GCGC 2 cut(s) 233, 518
AspS9I GGNCC 6 cut(s) 44, 163, 164, 261, 301, 432
AsuC2I CCSGG 2 cut(s) 264, 304
AsuHPI GGTGA 4 cut(s) 28, 553, 571, 649
AsuII TTCGAA 1 cut(s) 467
AvaI CYCGRG 2 cut(s) 565, 877
AvaII GGWCC 1 cut(s) 432
BaeGI GKGCMC 1 cut(s) 167
BamHI GGATCC 2 cut(s) 441, 520
BanII GRGCYC 1 cut(s) 167
BauI CACGAG 1 cut(s) 755
BbvI GCAGC 4 cut(s) 17, 187, 561, 762
BccI CCATC 3 cut(s) 590, 604, 860
BcgI CGANNNNNNTGC 2 cut(s) 200, 234
BciT130I CCWGG 1 cut(s) 259
BcnI CCSGG 2 cut(s) 264, 304
BfaI CTAG 1 cut(s) 627
BfmI CTRYAG 1 cut(s) 14
BfrI CTTAAG 1 cut(s) 800
BglI GCCNNNNNGGC 3 cut(s) 110, 162, 662
BisI GCNGC 8 cut(s) 6, 141, 176, 222, 353, 550, 776, 849
BlpI GCTNAGC 2 cut(s) 9, 725
BlsI GCNGC 8 cut(s) 7, 142, 177, 223, 354, 551, 777, 850
Bme1390I CCNGG 3 cut(s) 259, 264, 304
Bme18I GGWCC 1 cut(s) 432
BmeT110I CYCGRG 2 cut(s) 565, 877
BmgT120I GGNCC 6 cut(s) 44, 163, 164, 261, 301, 432
BmiI GGNNCC 8 cut(s) 165, 166, 275, 368, 401, 433, 443, 522
BmrFI CCNGG 3 cut(s) 259, 264, 304
BmsI GCATC 2 cut(s) 643, 771
BpmI CTGGAG 1 cut(s) 289
Bpu1102I GCTNAGC 2 cut(s) 9, 725
Bpu14I TTCGAA 1 cut(s) 467
BpuMI CCSGG 2 cut(s) 264, 304
BsaBI GATNNNNATC 1 cut(s) 525
BsaHI GRCGYC 3 cut(s) 181, 350, 632
BsaJI CCNNGG 4 cut(s) 141, 151, 279, 426
BsaWI WCCGGW 4 cut(s) 22, 538, 556, 864
BsaXI ACNNNNNCTCC 2 cut(s) 575, 605
Bsc4I CCNNNNNNNGG 3 cut(s) 270, 363, 545
Bse118I RCCGGY 3 cut(s) 41, 729, 739
Bse1I ACTGG 1 cut(s) 232
Bse8I GATNNNNATC 1 cut(s) 525
BseAI TCCGGA 1 cut(s) 864
BseBI CCWGG 1 cut(s) 259
BseDI CCNNGG 4 cut(s) 141, 151, 279, 426
BseGI GGATG 4 cut(s) 92, 601, 615, 852
BseJI GATNNNNATC 1 cut(s) 525
BseLI CCNNNNNNNGG 3 cut(s) 270, 363, 545
BseMII CTCAG 1 cut(s) 716
BseNI ACTGG 1 cut(s) 232
BseRI GAGGAG 2 cut(s) 509, 619
BseSI GKGCMC 1 cut(s) 167
BseX3I CGGCCG 1 cut(s) 129
BseXI GCAGC 4 cut(s) 17, 187, 561, 762
BseYI CCCAGC 1 cut(s) 185
Bsh1236I CGCG 3 cut(s) 143, 518, 578
Bsh1285I CGRYCG 2 cut(s) 132, 449
BshFI GGCC 6 cut(s) 45, 131, 156, 165, 262, 302
BsiEI CGRYCG 2 cut(s) 132, 449
BsiHKCI CYCGRG 2 cut(s) 565, 877
BslFI GGGAC 2 cut(s) 445, 584
BslI CCNNNNNNNGG 3 cut(s) 270, 363, 545
BsmFI GGGAC 2 cut(s) 445, 584
BsnI GGCC 6 cut(s) 45, 131, 156, 165, 262, 302
BsoBI CYCGRG 2 cut(s) 565, 877
Bsp119I TTCGAA 1 cut(s) 467
Bsp120I GGGCCC 1 cut(s) 163
Bsp1286I GDGCHC 1 cut(s) 167
Bsp13I TCCGGA 1 cut(s) 864
Bsp143I GATC 6 cut(s) 204, 441, 446, 520, 526, 796
Bsp1720I GCTNAGC 2 cut(s) 9, 725
BspANI GGCC 6 cut(s) 45, 131, 156, 165, 262, 302
BspCNI CTCAG 1 cut(s) 717
BspEI TCCGGA 1 cut(s) 864
BspFNI CGCG 3 cut(s) 143, 518, 578
BspLI GGNNCC 8 cut(s) 165, 166, 275, 368, 401, 433, 443, 522
BspPI GGATC 5 cut(s) 436, 449, 515, 528, 804
BspT104I TTCGAA 1 cut(s) 467
BspTI CTTAAG 1 cut(s) 800
BsrFI RCCGGY 3 cut(s) 41, 729, 739
BsrI ACTGG 1 cut(s) 232
BssAI RCCGGY 3 cut(s) 41, 729, 739
BssECI CCNNGG 4 cut(s) 141, 151, 279, 426
BssMI GATC 6 cut(s) 204, 441, 446, 520, 526, 796
BssNI GRCGYC 3 cut(s) 181, 350, 632
BssSI CACGAG 1 cut(s) 755
BssT1I CCWWGG 1 cut(s) 279
Bst2BI CACGAG 1 cut(s) 755
Bst2UI CCWGG 1 cut(s) 259
Bst4CI ACNGT 1 cut(s) 889
BstACI GRCGYC 3 cut(s) 181, 350, 632
BstAFI CTTAAG 1 cut(s) 800
BstBI TTCGAA 1 cut(s) 467
BstC8I GCNNGC 3 cut(s) 43, 219, 423
BstDEI CTNAG 2 cut(s) 9, 725
BstDSI CCRYGG 3 cut(s) 141, 151, 426
BstF5I GGATG 4 cut(s) 92, 601, 615, 852
BstFNI CGCG 3 cut(s) 143, 518, 578
BstHHI GCGC 2 cut(s) 233, 518
BstKTI GATC 6 cut(s) 207, 444, 449, 523, 529, 799
BstMBI GATC 6 cut(s) 204, 441, 446, 520, 526, 796
BstMCI CGRYCG 2 cut(s) 132, 449
BstMWI GCNNNNNNNGC 8 cut(s) 110, 137, 162, 207, 230, 422, 662, 781
BstNI CCWGG 1 cut(s) 259
BstNSI RCATGY 1 cut(s) 676
BstSCI CCNGG 3 cut(s) 257, 262, 302
BstSFI CTRYAG 1 cut(s) 14
BstSLI GKGCMC 1 cut(s) 167
BstUI CGCG 3 cut(s) 143, 518, 578
BstV1I GCAGC 4 cut(s) 17, 187, 561, 762
BstX2I RGATCY 3 cut(s) 441, 520, 796
BstYI RGATCY 3 cut(s) 441, 520, 796
BstZI CGGCCG 1 cut(s) 129
BsuRI GGCC 6 cut(s) 45, 131, 156, 165, 262, 302
BtgI CCRYGG 3 cut(s) 141, 151, 426
BtsCI GGATG 4 cut(s) 92, 601, 615, 852
Cac8I GCNNGC 3 cut(s) 43, 219, 423
CfoI GCGC 2 cut(s) 233, 518
Cfr10I RCCGGY 3 cut(s) 41, 729, 739
Cfr13I GGNCC 6 cut(s) 44, 163, 164, 261, 301, 432
Cfr42I CCGCGG 1 cut(s) 144
CseI GACGC 5 cut(s) 178, 189, 358, 584, 621
Csp6I GTAC 3 cut(s) 134, 733, 844
CviAII CATG 1 cut(s) 673
CviQI GTAC 3 cut(s) 134, 733, 844
DdeI CTNAG 2 cut(s) 9, 725
DpnI GATC 6 cut(s) 206, 443, 448, 522, 528, 798
DpnII GATC 6 cut(s) 204, 441, 446, 520, 526, 796
DraIII CACNNNGTG 1 cut(s) 760
EaeI YGGCCR 2 cut(s) 129, 154
EagI CGGCCG 1 cut(s) 129
EciI GGCGGA 2 cut(s) 680, 850
EclXI CGGCCG 1 cut(s) 129
Eco130I CCWWGG 1 cut(s) 279
Eco24I GRGCYC 1 cut(s) 167
Eco47I GGWCC 1 cut(s) 432
Eco52I CGGCCG 1 cut(s) 129
Eco88I CYCGRG 2 cut(s) 565, 877
EcoO109I RGGNCCY 1 cut(s) 164
EcoRII CCWGG 1 cut(s) 257
EcoT14I CCWWGG 1 cut(s) 279
EcoT38I GRGCYC 1 cut(s) 167
ErhI CCWWGG 1 cut(s) 279
FaeI CATG 1 cut(s) 676
FaiI YATR 7 cut(s) 107, 246, 248, 590, 674, 809, 892
FaqI GGGAC 2 cut(s) 445, 584
FatI CATG 1 cut(s) 672
FauI CCCGC 1 cut(s) 571
FauNDI CATATG 1 cut(s) 246
Fnu4HI GCNGC 8 cut(s) 6, 141, 176, 222, 353, 550, 776, 849
FokI GGATG 4 cut(s) 79, 608, 622, 839
FriOI GRGCYC 1 cut(s) 167
Fsp4HI GCNGC 8 cut(s) 6, 141, 176, 222, 353, 550, 776, 849
FspBI CTAG 1 cut(s) 627
GlaI GCGC 2 cut(s) 232, 517
GluI GCNGC 8 cut(s) 6, 141, 176, 222, 353, 550, 776, 849
GsaI CCCAGC 1 cut(s) 189
GsuI CTGGAG 1 cut(s) 289
HaeIII GGCC 6 cut(s) 45, 131, 156, 165, 262, 302
HgaI GACGC 5 cut(s) 178, 189, 358, 584, 621
HhaI GCGC 2 cut(s) 233, 518
Hin1I GRCGYC 3 cut(s) 181, 350, 632
Hin1II CATG 1 cut(s) 676
Hin6I GCGC 2 cut(s) 231, 516
HinP1I GCGC 2 cut(s) 231, 516
HincII GTYRAC 1 cut(s) 325
HindII GTYRAC 1 cut(s) 325
HinfI GANTC 5 cut(s) 239, 284, 335, 408, 680
HphI GGTGA 4 cut(s) 28, 553, 571, 649
Hpy166II GTNNAC 6 cut(s) 136, 325, 562, 735, 763, 830
Hpy188I TCNGA 2 cut(s) 194, 446
Hpy188III TCNNGA 7 cut(s) 397, 524, 530, 748, 856, 865, 877
Hpy8I GTNNAC 6 cut(s) 136, 325, 562, 735, 763, 830
Hpy99I CGWCG 9 cut(s) 183, 255, 383, 479, 482, 578, 637, 770, 827
HpyAV CCTTC 1 cut(s) 862
HpyCH4III ACNGT 1 cut(s) 889
HpyCH4IV ACGT 1 cut(s) 788
HpyF10VI GCNNNNNNNGC 8 cut(s) 110, 137, 162, 207, 230, 422, 662, 781
HpyF3I CTNAG 2 cut(s) 9, 725
HpySE526I ACGT 1 cut(s) 788
Hsp92I GRCGYC 3 cut(s) 181, 350, 632
Hsp92II CATG 1 cut(s) 676
HspAI GCGC 2 cut(s) 231, 516
Kpn2I TCCGGA 1 cut(s) 864
KroI GCCGGC 1 cut(s) 41
KroNI GCCGGC 1 cut(s) 43
KspI CCGCGG 1 cut(s) 144
Kzo9I GATC 6 cut(s) 204, 441, 446, 520, 526, 796
LmnI GCTCC 4 cut(s) 34, 279, 399, 867
Lsp1109I GCAGC 4 cut(s) 17, 187, 561, 762
LweI GCATC 2 cut(s) 643, 771
MaeI CTAG 1 cut(s) 627
MaeII ACGT 1 cut(s) 788
MalI GATC 6 cut(s) 206, 443, 448, 522, 528, 798
MboI GATC 6 cut(s) 204, 441, 446, 520, 526, 796
MfeI CAATTG 1 cut(s) 158
MflI RGATCY 3 cut(s) 441, 520, 796
MhlI GDGCHC 1 cut(s) 167
MluCI AATT 7 cut(s) 51, 158, 451, 463, 619, 685, 716
MlyI GAGTC 4 cut(s) 278, 344, 417, 689
MmeI TCCRAC 2 cut(s) 363, 771
MroI TCCGGA 1 cut(s) 864
MroNI GCCGGC 1 cut(s) 41
MroXI GAANNNNTTC 1 cut(s) 872
MseI TTAA 3 cut(s) 98, 801, 816
MslI CAYNNNNRTG 2 cut(s) 557, 740
MspA1I CMGCKG 3 cut(s) 8, 76, 143
MspCI CTTAAG 1 cut(s) 800
MspR9I CCNGG 3 cut(s) 259, 264, 304
MunI CAATTG 1 cut(s) 158
MvaI CCWGG 1 cut(s) 259
MvnI CGCG 3 cut(s) 143, 518, 578
MwoI GCNNNNNNNGC 8 cut(s) 110, 137, 162, 207, 230, 422, 662, 781
NaeI GCCGGC 1 cut(s) 43
NciI CCSGG 2 cut(s) 264, 304
NdeI CATATG 1 cut(s) 246
NdeII GATC 6 cut(s) 204, 441, 446, 520, 526, 796
NgoMIV GCCGGC 1 cut(s) 41
NlaIII CATG 1 cut(s) 676
NlaIV GGNNCC 8 cut(s) 165, 166, 275, 368, 401, 433, 443, 522
NspI RCATGY 1 cut(s) 676
NspV TTCGAA 1 cut(s) 467
OliI CACNNNNGTG 2 cut(s) 557, 740
PaeR7I CTCGAG 1 cut(s) 877
PcsI WCGNNNNNNNCGW 5 cut(s) 339, 387, 480, 753, 762
PdiI GCCGGC 1 cut(s) 43
PdmI GAANNNNTTC 1 cut(s) 872
PfeI GAWTC 1 cut(s) 239
PkrI GCNGC 8 cut(s) 7, 142, 177, 223, 354, 551, 777, 850
Ple19I CGATCG 1 cut(s) 449
PleI GAGTC 4 cut(s) 278, 343, 416, 688
PpsI GAGTC 4 cut(s) 278, 343, 416, 688
Psp6I CCWGG 1 cut(s) 257
PspFI CCCAGC 1 cut(s) 185
PspGI CCWGG 1 cut(s) 257
PspN4I GGNNCC 8 cut(s) 165, 166, 275, 368, 401, 433, 443, 522
PspOMI GGGCCC 1 cut(s) 163
PspPI GGNCC 6 cut(s) 44, 163, 164, 261, 301, 432
PsuI RGATCY 3 cut(s) 441, 520, 796
PvuI CGATCG 1 cut(s) 449
PvuII CAGCTG 2 cut(s) 8, 76
RsaI GTAC 3 cut(s) 135, 734, 845
RsaNI GTAC 3 cut(s) 134, 733, 844
RseI CAYNNNNRTG 2 cut(s) 557, 740
SacII CCGCGG 1 cut(s) 144
SaqAI TTAA 3 cut(s) 98, 801, 816
SatI GCNGC 8 cut(s) 6, 141, 176, 222, 353, 550, 776, 849
Sau3AI GATC 6 cut(s) 204, 441, 446, 520, 526, 796
Sau96I GGNCC 6 cut(s) 44, 163, 164, 261, 301, 432
SchI GAGTC 4 cut(s) 278, 344, 417, 689
ScrFI CCNGG 3 cut(s) 259, 264, 304
SduI GDGCHC 1 cut(s) 167
SfaNI GCATC 2 cut(s) 643, 771
SfcI CTRYAG 1 cut(s) 14
SfiI GGCCNNNNNGGCC 1 cut(s) 162
Sfr274I CTCGAG 1 cut(s) 877
Sfr303I CCGCGG 1 cut(s) 144
SfuI TTCGAA 1 cut(s) 467
SgrAI CRCCGGYG 1 cut(s) 739
SgrBI CCGCGG 1 cut(s) 144
SinI GGWCC 1 cut(s) 432
SlaI CTCGAG 1 cut(s) 877
SmiMI CAYNNNNRTG 2 cut(s) 557, 740
SmlI CTYRAG 2 cut(s) 800, 877
SmoI CTYRAG 2 cut(s) 800, 877
Sse9I AATT 7 cut(s) 51, 158, 451, 463, 619, 685, 716
SspMI CTAG 1 cut(s) 627
StyD4I CCNGG 3 cut(s) 257, 262, 302
StyI CCWWGG 1 cut(s) 279
TaaI ACNGT 1 cut(s) 889
TaiI ACGT 1 cut(s) 791
TaqI TCGA 7 cut(s) 390, 449, 467, 474, 683, 747, 878
TaqII GACCGA 1 cut(s) 283
TasI AATT 7 cut(s) 51, 158, 451, 463, 619, 685, 716
TauI GCSGC 4 cut(s) 143, 224, 355, 851
TfiI GAWTC 1 cut(s) 239
Tru1I TTAA 3 cut(s) 98, 801, 816
Tru9I TTAA 3 cut(s) 98, 801, 816
TseI GCWGC 4 cut(s) 5, 175, 549, 775
TspGWI ACGGA 1 cut(s) 396
Vha464I CTTAAG 1 cut(s) 800
VpaK11BI GGWCC 1 cut(s) 432
XceI RCATGY 1 cut(s) 676
XhoI CTCGAG 1 cut(s) 877
XmnI GAANNNNTTC 1 cut(s) 872
XspI CTAG 1 cut(s) 627
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.