pycom13g11100

Sterile alpha motif.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0003205
Physical Location & Seq
Reverse (-)
7590452 .. 7592803
2352 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g11100.1

Sequence Viewer

Length: 918 bp
ATGGCAGCTGAGCTACAGCCACCGGAAGCTCCTATCACCGCCGTCCCGACAATTCCAACCACCACAACGACACAGCTGATAAATACAGAAGCATCCTTAACTGCCACAACGGCAATAGCAACCACAACGGCCGTACACACCGCGGAGAACCACGGCCCCCAATTGGGCCCCAAAAGGCAGCGACGCCCCAGCGTCCGATTAGGCGAGATCGGCGACCAGCCCGCCGCTACTGGCTCATTTGAATCACATATGCGACGAGCCAGGCCCGGCTGGAGGCTCCCCAAGGACTCCAAATCGGTCAAGGCCCGGTCAATCACCAACCTCGTCAACGGCAACGAGTCCAACGAAATGACGCCGCCCGATGAGAGGAACCAAAATGGCGACGGACGGTTCGAGTTCGGGAACCGGAGAGTCAAGGCGAAGCGAGCCACGGGGACCAAGAGGATCCGATCGAATTGGGCTTCCAATTCGAAGCTCGACGACGGCGATAGCAGAGAGGAGGGAGGCGAGTGGTTCAGCGCGGATCCCGATCAGGATAGTCCGGTGAGGGGCAGCACTCCAGTGAACTCGGGGGATGACGCGGGGGAGGATATGTGGGATGGGCAGAGGATGGCGGGAAATTGGGCTAGGGCGTCGGTGAGCAGGGAGAACGATGCCGTTGAGGCGGATAACATGCCGGAGTCGAATTGGAGTGGGGTGAGGTCGTGGCTGATAGAATTGGGGCTGAGCCGGTACACGCCGGTGTTCGAGATACACGAGGTGGACGACGAGGTGCTGCCGATGCTGACTTTGGAGGATCTTAAGGATATGGGTATCAACGCCGTCGGTTCACGGCGGAAAATGTACGCCGCCATCCAGAAGCTCCGGAAGGGGTTCTCGAGGAAAACTGTATGCACTCATCTGGGCTGTGTGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAM_1 SAM_2

Protein Analysis

306

Amino Acids

33.5

Weight (kDa)

6.27

Isoelectric Point (pI)

48.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAM_1 PF00536 232 - 289 3.8e-13 SAM domain (Sterile alpha motif)
SAM_2 PF07647 233 - 289 3.3e-13 SAM domain (Sterile alpha motif)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 143, 521, 581
AccIII TCCGGA 1 cut(s) 864
AclWI GGATC 5 cut(s) 439, 452, 518, 531, 804
AcoI YGGCCR 1 cut(s) 129
AcyI GRCGYC 3 cut(s) 184, 353, 632
AdeI CACNNNGTG 1 cut(s) 760
AfaI GTAC 3 cut(s) 135, 734, 845
AfiI CCNNNNNNNGG 5 cut(s) 163, 164, 273, 366, 548
AflII CTTAAG 1 cut(s) 800
AgsI TTSAA 1 cut(s) 242
AjnI CCWGG 1 cut(s) 260
AleI CACNNNNGTG 2 cut(s) 560, 740
AluBI AGCT 6 cut(s) 8, 13, 29, 76, 475, 862
AluI AGCT 6 cut(s) 8, 13, 29, 76, 475, 862
AlwI GGATC 5 cut(s) 439, 452, 518, 531, 804
Ama87I CYCGRG 2 cut(s) 568, 877
Aor13HI TCCGGA 1 cut(s) 864
AoxI GGCC 5 cut(s) 129, 154, 166, 263, 303
ApaI GGGCCC 1 cut(s) 170
ApeKI GCWGC 4 cut(s) 5, 178, 552, 775
ArsI GACNNNNNNTTYG 2 cut(s) 374, 406
Asp700I GAANNNNTTC 1 cut(s) 872
AspLEI GCGC 1 cut(s) 521
AspS9I GGNCC 6 cut(s) 155, 166, 167, 264, 304, 435
AsuC2I CCSGG 2 cut(s) 267, 307
AsuHPI GGTGA 5 cut(s) 28, 307, 556, 649, 709
AsuII TTCGAA 1 cut(s) 470
AvaI CYCGRG 2 cut(s) 568, 877
AvaII GGWCC 1 cut(s) 435
BaeGI GKGCMC 1 cut(s) 170
BamHI GGATCC 2 cut(s) 444, 523
BanII GRGCYC 1 cut(s) 170
BauI CACGAG 1 cut(s) 755
BbvI GCAGC 4 cut(s) 17, 190, 564, 762
BccI CCATC 3 cut(s) 593, 604, 860
BciT130I CCWGG 1 cut(s) 262
BcnI CCSGG 2 cut(s) 267, 307
BfaI CTAG 1 cut(s) 627
BfmI CTRYAG 1 cut(s) 14
BfrI CTTAAG 1 cut(s) 800
BglI GCCNNNNNGGC 2 cut(s) 110, 662
BisI GCNGC 7 cut(s) 6, 179, 225, 356, 553, 776, 849
BlpI GCTNAGC 2 cut(s) 9, 725
BlsI GCNGC 7 cut(s) 7, 180, 226, 357, 554, 777, 850
Bme1390I CCNGG 3 cut(s) 262, 267, 307
Bme18I GGWCC 1 cut(s) 435
BmeT110I CYCGRG 2 cut(s) 568, 877
BmgT120I GGNCC 6 cut(s) 155, 166, 167, 264, 304, 435
BmiI GGNNCC 9 cut(s) 157, 168, 169, 278, 371, 404, 436, 446, 525
BmrFI CCNGG 3 cut(s) 262, 267, 307
BmsI GCATC 3 cut(s) 101, 643, 771
BpmI CTGGAG 2 cut(s) 292, 543
Bpu1102I GCTNAGC 2 cut(s) 9, 725
Bpu14I TTCGAA 1 cut(s) 470
BpuMI CCSGG 2 cut(s) 267, 307
BsaBI GATNNNNATC 1 cut(s) 528
BsaHI GRCGYC 3 cut(s) 184, 353, 632
BsaJI CCNNGG 4 cut(s) 141, 151, 282, 429
BsaWI WCCGGW 4 cut(s) 22, 405, 541, 864
BsaXI ACNNNNNCTCC 2 cut(s) 578, 608
Bsc4I CCNNNNNNNGG 5 cut(s) 163, 164, 273, 366, 548
Bse118I RCCGGY 2 cut(s) 729, 739
Bse1I ACTGG 2 cut(s) 235, 560
Bse8I GATNNNNATC 1 cut(s) 528
BseAI TCCGGA 1 cut(s) 864
BseBI CCWGG 1 cut(s) 262
BseDI CCNNGG 4 cut(s) 141, 151, 282, 429
BseGI GGATG 5 cut(s) 92, 580, 604, 615, 852
BseJI GATNNNNATC 1 cut(s) 528
BseLI CCNNNNNNNGG 5 cut(s) 163, 164, 273, 366, 548
BseMII CTCAG 1 cut(s) 716
BseNI ACTGG 2 cut(s) 235, 560
BseRI GAGGAG 1 cut(s) 512
BseSI GKGCMC 1 cut(s) 170
BseX3I CGGCCG 1 cut(s) 129
BseXI GCAGC 4 cut(s) 17, 190, 564, 762
BseYI CCCAGC 1 cut(s) 188
Bsh1236I CGCG 3 cut(s) 143, 521, 581
Bsh1285I CGRYCG 2 cut(s) 132, 452
BshFI GGCC 5 cut(s) 131, 156, 168, 265, 305
BsiEI CGRYCG 2 cut(s) 132, 452
BsiHKCI CYCGRG 2 cut(s) 568, 877
BsiSI CCGG 9 cut(s) 23, 267, 307, 406, 542, 677, 730, 740, 865
BslFI GGGAC 2 cut(s) 29, 448
BslI CCNNNNNNNGG 5 cut(s) 163, 164, 273, 366, 548
BsmFI GGGAC 2 cut(s) 29, 448
BsnI GGCC 5 cut(s) 131, 156, 168, 265, 305
BsoBI CYCGRG 2 cut(s) 568, 877
Bsp119I TTCGAA 1 cut(s) 470
Bsp120I GGGCCC 1 cut(s) 166
Bsp1286I GDGCHC 1 cut(s) 170
Bsp13I TCCGGA 1 cut(s) 864
Bsp143I GATC 6 cut(s) 207, 444, 449, 523, 529, 796
Bsp1720I GCTNAGC 2 cut(s) 9, 725
BspANI GGCC 5 cut(s) 131, 156, 168, 265, 305
BspCNI CTCAG 1 cut(s) 717
BspEI TCCGGA 1 cut(s) 864
BspFNI CGCG 3 cut(s) 143, 521, 581
BspLI GGNNCC 9 cut(s) 157, 168, 169, 278, 371, 404, 436, 446, 525
BspPI GGATC 5 cut(s) 439, 452, 518, 531, 804
BspT104I TTCGAA 1 cut(s) 470
BspTI CTTAAG 1 cut(s) 800
BsrFI RCCGGY 2 cut(s) 729, 739
BsrI ACTGG 2 cut(s) 235, 560
BssAI RCCGGY 2 cut(s) 729, 739
BssECI CCNNGG 4 cut(s) 141, 151, 282, 429
BssMI GATC 6 cut(s) 207, 444, 449, 523, 529, 796
BssNI GRCGYC 3 cut(s) 184, 353, 632
BssSI CACGAG 1 cut(s) 755
BssT1I CCWWGG 1 cut(s) 282
Bst2BI CACGAG 1 cut(s) 755
Bst2UI CCWGG 1 cut(s) 262
Bst4CI ACNGT 2 cut(s) 390, 889
BstACI GRCGYC 3 cut(s) 184, 353, 632
BstAFI CTTAAG 1 cut(s) 800
BstBI TTCGAA 1 cut(s) 470
BstC8I GCNNGC 2 cut(s) 222, 426
BstDEI CTNAG 2 cut(s) 9, 725
BstDSI CCRYGG 3 cut(s) 141, 151, 429
BstF5I GGATG 5 cut(s) 92, 580, 604, 615, 852
BstFNI CGCG 3 cut(s) 143, 521, 581
BstHHI GCGC 1 cut(s) 521
BstKTI GATC 6 cut(s) 210, 447, 452, 526, 532, 799
BstMBI GATC 6 cut(s) 207, 444, 449, 523, 529, 796
BstMCI CGRYCG 2 cut(s) 132, 452
BstMWI GCNNNNNNNGC 5 cut(s) 110, 210, 425, 662, 781
BstNI CCWGG 1 cut(s) 262
BstNSI RCATGY 1 cut(s) 676
BstSCI CCNGG 3 cut(s) 260, 265, 305
BstSFI CTRYAG 1 cut(s) 14
BstSLI GKGCMC 1 cut(s) 170
BstUI CGCG 3 cut(s) 143, 521, 581
BstV1I GCAGC 4 cut(s) 17, 190, 564, 762
BstX2I RGATCY 3 cut(s) 444, 523, 796
BstYI RGATCY 3 cut(s) 444, 523, 796
BstZI CGGCCG 1 cut(s) 129
BsuRI GGCC 5 cut(s) 131, 156, 168, 265, 305
BtgI CCRYGG 3 cut(s) 141, 151, 429
BtsCI GGATG 5 cut(s) 92, 580, 604, 615, 852
BtsIMutI CAGTG 1 cut(s) 567
Cac8I GCNNGC 2 cut(s) 222, 426
CfoI GCGC 1 cut(s) 521
Cfr10I RCCGGY 2 cut(s) 729, 739
Cfr13I GGNCC 6 cut(s) 155, 166, 167, 264, 304, 435
Cfr42I CCGCGG 1 cut(s) 144
CseI GACGC 5 cut(s) 181, 192, 361, 587, 621
Csp6I GTAC 3 cut(s) 134, 733, 844
CviAII CATG 1 cut(s) 673
CviQI GTAC 3 cut(s) 134, 733, 844
DdeI CTNAG 2 cut(s) 9, 725
DpnI GATC 6 cut(s) 209, 446, 451, 525, 531, 798
DpnII GATC 6 cut(s) 207, 444, 449, 523, 529, 796
DraIII CACNNNGTG 1 cut(s) 760
EaeI YGGCCR 1 cut(s) 129
EagI CGGCCG 1 cut(s) 129
EciI GGCGGA 2 cut(s) 680, 850
EclXI CGGCCG 1 cut(s) 129
Eco130I CCWWGG 1 cut(s) 282
Eco24I GRGCYC 1 cut(s) 170
Eco47I GGWCC 1 cut(s) 435
Eco52I CGGCCG 1 cut(s) 129
Eco88I CYCGRG 2 cut(s) 568, 877
EcoO109I RGGNCCY 1 cut(s) 167
EcoRII CCWGG 1 cut(s) 260
EcoT14I CCWWGG 1 cut(s) 282
EcoT38I GRGCYC 1 cut(s) 170
ErhI CCWWGG 1 cut(s) 282
FaeI CATG 1 cut(s) 676
FaiI YATR 6 cut(s) 249, 251, 593, 674, 809, 892
FaqI GGGAC 2 cut(s) 29, 448
FatI CATG 1 cut(s) 672
FauI CCCGC 3 cut(s) 229, 574, 607
FauNDI CATATG 1 cut(s) 249
Fnu4HI GCNGC 7 cut(s) 6, 179, 225, 356, 553, 776, 849
FokI GGATG 5 cut(s) 79, 587, 611, 622, 839
FriOI GRGCYC 1 cut(s) 170
Fsp4HI GCNGC 7 cut(s) 6, 179, 225, 356, 553, 776, 849
FspBI CTAG 1 cut(s) 627
GlaI GCGC 1 cut(s) 520
GluI GCNGC 7 cut(s) 6, 179, 225, 356, 553, 776, 849
GsaI CCCAGC 1 cut(s) 192
GsuI CTGGAG 2 cut(s) 292, 543
HaeIII GGCC 5 cut(s) 131, 156, 168, 265, 305
HapII CCGG 9 cut(s) 23, 267, 307, 406, 542, 677, 730, 740, 865
HgaI GACGC 5 cut(s) 181, 192, 361, 587, 621
HhaI GCGC 1 cut(s) 521
Hin1I GRCGYC 3 cut(s) 184, 353, 632
Hin1II CATG 1 cut(s) 676
Hin6I GCGC 1 cut(s) 519
HinP1I GCGC 1 cut(s) 519
HincII GTYRAC 1 cut(s) 328
HindII GTYRAC 1 cut(s) 328
HinfI GANTC 5 cut(s) 242, 287, 338, 411, 680
HpaII CCGG 9 cut(s) 23, 267, 307, 406, 542, 677, 730, 740, 865
HphI GGTGA 5 cut(s) 28, 307, 556, 649, 709
Hpy166II GTNNAC 6 cut(s) 136, 328, 565, 735, 763, 830
Hpy188I TCNGA 2 cut(s) 197, 449
Hpy188III TCNNGA 8 cut(s) 46, 400, 527, 533, 748, 856, 865, 877
Hpy8I GTNNAC 6 cut(s) 136, 328, 565, 735, 763, 830
Hpy99I CGWCG 8 cut(s) 186, 258, 386, 482, 485, 637, 770, 827
HpyAV CCTTC 1 cut(s) 862
HpyCH4III ACNGT 2 cut(s) 390, 889
HpyCH4V TGCA 1 cut(s) 894
HpyF10VI GCNNNNNNNGC 5 cut(s) 110, 210, 425, 662, 781
HpyF3I CTNAG 2 cut(s) 9, 725
Hsp92I GRCGYC 3 cut(s) 184, 353, 632
Hsp92II CATG 1 cut(s) 676
HspAI GCGC 1 cut(s) 519
Kpn2I TCCGGA 1 cut(s) 864
KspI CCGCGG 1 cut(s) 144
Kzo9I GATC 6 cut(s) 207, 444, 449, 523, 529, 796
LmnI GCTCC 3 cut(s) 34, 282, 867
Lsp1109I GCAGC 4 cut(s) 17, 190, 564, 762
LweI GCATC 3 cut(s) 101, 643, 771
MaeI CTAG 1 cut(s) 627
MalI GATC 6 cut(s) 209, 446, 451, 525, 531, 798
MboI GATC 6 cut(s) 207, 444, 449, 523, 529, 796
MfeI CAATTG 1 cut(s) 161
MflI RGATCY 3 cut(s) 444, 523, 796
MhlI GDGCHC 1 cut(s) 170
MluCI AATT 7 cut(s) 51, 161, 454, 466, 619, 685, 716
MlyI GAGTC 4 cut(s) 281, 347, 420, 689
MmeI TCCRAC 2 cut(s) 80, 366
MroI TCCGGA 1 cut(s) 864
MroXI GAANNNNTTC 1 cut(s) 872
MseI TTAA 2 cut(s) 98, 801
MslI CAYNNNNRTG 2 cut(s) 560, 740
MspA1I CMGCKG 3 cut(s) 8, 76, 143
MspCI CTTAAG 1 cut(s) 800
MspI CCGG 9 cut(s) 23, 267, 307, 406, 542, 677, 730, 740, 865
MspR9I CCNGG 3 cut(s) 262, 267, 307
MunI CAATTG 1 cut(s) 161
MvaI CCWGG 1 cut(s) 262
MvnI CGCG 3 cut(s) 143, 521, 581
MwoI GCNNNNNNNGC 5 cut(s) 110, 210, 425, 662, 781
NciI CCSGG 2 cut(s) 267, 307
NdeI CATATG 1 cut(s) 249
NdeII GATC 6 cut(s) 207, 444, 449, 523, 529, 796
NlaIII CATG 1 cut(s) 676
NlaIV GGNNCC 9 cut(s) 157, 168, 169, 278, 371, 404, 436, 446, 525
NspI RCATGY 1 cut(s) 676
NspV TTCGAA 1 cut(s) 470
OliI CACNNNNGTG 2 cut(s) 560, 740
PaeR7I CTCGAG 1 cut(s) 877
PcsI WCGNNNNNNNCGW 5 cut(s) 342, 390, 483, 753, 762
PdmI GAANNNNTTC 1 cut(s) 872
PfeI GAWTC 1 cut(s) 242
PkrI GCNGC 7 cut(s) 7, 180, 226, 357, 554, 777, 850
Ple19I CGATCG 1 cut(s) 452
PleI GAGTC 4 cut(s) 281, 346, 419, 688
PpsI GAGTC 4 cut(s) 281, 346, 419, 688
Psp6I CCWGG 1 cut(s) 260
PspFI CCCAGC 1 cut(s) 188
PspGI CCWGG 1 cut(s) 260
PspN4I GGNNCC 9 cut(s) 157, 168, 169, 278, 371, 404, 436, 446, 525
PspOMI GGGCCC 1 cut(s) 166
PspPI GGNCC 6 cut(s) 155, 166, 167, 264, 304, 435
PsuI RGATCY 3 cut(s) 444, 523, 796
PvuI CGATCG 1 cut(s) 452
PvuII CAGCTG 2 cut(s) 8, 76
RsaI GTAC 3 cut(s) 135, 734, 845
RsaNI GTAC 3 cut(s) 134, 733, 844
RseI CAYNNNNRTG 2 cut(s) 560, 740
SacII CCGCGG 1 cut(s) 144
SaqAI TTAA 2 cut(s) 98, 801
SatI GCNGC 7 cut(s) 6, 179, 225, 356, 553, 776, 849
Sau3AI GATC 6 cut(s) 207, 444, 449, 523, 529, 796
Sau96I GGNCC 6 cut(s) 155, 166, 167, 264, 304, 435
SchI GAGTC 4 cut(s) 281, 347, 420, 689
ScrFI CCNGG 3 cut(s) 262, 267, 307
SduI GDGCHC 1 cut(s) 170
SfaNI GCATC 3 cut(s) 101, 643, 771
SfcI CTRYAG 1 cut(s) 14
Sfr274I CTCGAG 1 cut(s) 877
Sfr303I CCGCGG 1 cut(s) 144
SfuI TTCGAA 1 cut(s) 470
SgrAI CRCCGGYG 1 cut(s) 739
SgrBI CCGCGG 1 cut(s) 144
SinI GGWCC 1 cut(s) 435
SlaI CTCGAG 1 cut(s) 877
SmiMI CAYNNNNRTG 2 cut(s) 560, 740
SmlI CTYRAG 2 cut(s) 800, 877
SmoI CTYRAG 2 cut(s) 800, 877
Sse9I AATT 7 cut(s) 51, 161, 454, 466, 619, 685, 716
SspMI CTAG 1 cut(s) 627
StyD4I CCNGG 3 cut(s) 260, 265, 305
StyI CCWWGG 1 cut(s) 282
TaaI ACNGT 2 cut(s) 390, 889
TaqI TCGA 7 cut(s) 393, 452, 470, 477, 683, 747, 878
TaqII GACCGA 1 cut(s) 286
TasI AATT 7 cut(s) 51, 161, 454, 466, 619, 685, 716
TauI GCSGC 3 cut(s) 227, 358, 851
TfiI GAWTC 1 cut(s) 242
Tru1I TTAA 2 cut(s) 98, 801
Tru9I TTAA 2 cut(s) 98, 801
TscAI CASTG 1 cut(s) 567
TseI GCWGC 4 cut(s) 5, 178, 552, 775
TspGWI ACGGA 1 cut(s) 399
TspRI CASTG 1 cut(s) 567
Vha464I CTTAAG 1 cut(s) 800
VpaK11BI GGWCC 1 cut(s) 435
XceI RCATGY 1 cut(s) 676
XhoI CTCGAG 1 cut(s) 877
XmnI GAANNNNTTC 1 cut(s) 872
XspI CTAG 1 cut(s) 627
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.