U-box domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G50900 |
| fragaria_vesca | FvH4_5g09100 |
| malus_domestica | MD06G1133700.v1.1 MD14G1150000.v1.1 |
| prunus_persica | Prupe.5G144800_v2.0.a1 |
| pyrus_communis | pycom06g12500 pycom14g12470 |
| rosa_chinensis | RchiOBHm_Chr7g0189111 |
| rosa_laevigata | RLG00000004633 |
| rosa_multiflora | Rmu_co8393143.1_g000001 Rmu_sc0004290.1_g000010 Rmu_sc0007859.1_g000002 |
| rosa_roxburghii | Rroxscaffold_3G00265780 |
| rosa_rugosa | Rorug06G0496000 |
| rosa_samantha | Rh7AG100800 Rh7BG103200 Rh7CG104700 Rh7DG102600 |
| rosa_wichuraiana | Rw7G008690 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 417 |
| AccBSI | CCGCTC | 2 cut(s) | 193, 477 |
| AccI | GTMKAC | 3 cut(s) | 13, 1493, 1678 |
| AccII | CGCG | 3 cut(s) | 342, 453, 589 |
| AccIII | TCCGGA | 1 cut(s) | 399 |
| AclI | AACGTT | 1 cut(s) | 771 |
| AclWI | GGATC | 1 cut(s) | 674 |
| AcoI | YGGCCR | 1 cut(s) | 597 |
| AcsI | RAATTY | 3 cut(s) | 994, 1588, 1752 |
| AcuI | CTGAAG | 1 cut(s) | 487 |
| AcyI | GRCGYC | 4 cut(s) | 345, 414, 480, 1622 |
| AfaI | GTAC | 2 cut(s) | 1558, 1604 |
| AfeI | AGCGCT | 1 cut(s) | 365 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 522, 553, 588 |
| AgsI | TTSAA | 7 cut(s) | 208, 869, 1183, 1324, 1541, 1573, 1638 |
| AjnI | CCWGG | 3 cut(s) | 228, 249, 945 |
| Alw26I | GTCTC | 5 cut(s) | 179, 331, 521, 1129, 1722 |
| AlwI | GGATC | 1 cut(s) | 674 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1693 |
| Ama87I | CYCGRG | 1 cut(s) | 1387 |
| Aor13HI | TCCGGA | 1 cut(s) | 399 |
| Aor51HI | AGCGCT | 1 cut(s) | 365 |
| AoxI | GGCC | 5 cut(s) | 219, 252, 597, 1353, 1485 |
| ApoI | RAATTY | 3 cut(s) | 994, 1588, 1752 |
| AspLEI | GCGC | 6 cut(s) | 366, 581, 661, 865, 1063, 1090 |
| AspS9I | GGNCC | 2 cut(s) | 219, 253 |
| AsuC2I | CCSGG | 3 cut(s) | 536, 829, 960 |
| AsuHPI | GGTGA | 6 cut(s) | 232, 253, 568, 694, 1354, 1421 |
| AvaI | CYCGRG | 1 cut(s) | 1387 |
| BanII | GRGCYC | 2 cut(s) | 377, 965 |
| BbsI | GAAGAC | 1 cut(s) | 41 |
| BccI | CCATC | 4 cut(s) | 736, 745, 1399, 1442 |
| BceAI | ACGGC | 6 cut(s) | 332, 406, 472, 710, 1095, 1463 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1483, 1517 |
| BciT130I | CCWGG | 3 cut(s) | 230, 251, 947 |
| BcnI | CCSGG | 3 cut(s) | 536, 829, 960 |
| BcoDI | GTCTC | 5 cut(s) | 179, 331, 521, 1129, 1722 |
| BfaI | CTAG | 2 cut(s) | 1305, 1395 |
| BfmI | CTRYAG | 2 cut(s) | 566, 623 |
| BfoI | RGCGCY | 4 cut(s) | 367, 582, 866, 1064 |
| BglI | GCCNNNNNGGC | 4 cut(s) | 731, 951, 1361, 1484 |
| BglII | AGATCT | 1 cut(s) | 1772 |
| Bme1390I | CCNGG | 6 cut(s) | 230, 251, 536, 829, 947, 960 |
| BmeT110I | CYCGRG | 1 cut(s) | 1387 |
| BmgT120I | GGNCC | 2 cut(s) | 219, 253 |
| BmiI | GGNNCC | 1 cut(s) | 910 |
| BmrFI | CCNGG | 6 cut(s) | 230, 251, 536, 829, 947, 960 |
| BmrI | ACTGGG | 1 cut(s) | 570 |
| BmsI | GCATC | 1 cut(s) | 1236 |
| BmuI | ACTGGG | 1 cut(s) | 570 |
| BpiI | GAAGAC | 1 cut(s) | 41 |
| BpmI | CTGGAG | 3 cut(s) | 233, 895, 1244 |
| Bpu10I | CCTNAGC | 2 cut(s) | 843, 1359 |
| BpuMI | CCSGG | 3 cut(s) | 536, 829, 960 |
| BsaHI | GRCGYC | 4 cut(s) | 345, 414, 480, 1622 |
| BsaI | GGTCTC | 3 cut(s) | 521, 1129, 1722 |
| BsaJI | CCNNGG | 4 cut(s) | 600, 726, 946, 1290 |
| BsaWI | WCCGGW | 2 cut(s) | 399, 673 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 522, 553, 588 |
| Bse118I | RCCGGY | 3 cut(s) | 272, 497, 1667 |
| Bse1I | ACTGG | 1 cut(s) | 565 |
| BseAI | TCCGGA | 1 cut(s) | 399 |
| BseBI | CCWGG | 3 cut(s) | 230, 251, 947 |
| BseDI | CCNNGG | 4 cut(s) | 600, 726, 946, 1290 |
| BseGI | GGATG | 2 cut(s) | 1051, 1453 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 522, 553, 588 |
| BseMII | CTCAG | 2 cut(s) | 419, 1733 |
| BseNI | ACTGG | 1 cut(s) | 565 |
| BseRI | GAGGAG | 8 cut(s) | 29, 32, 64, 155, 305, 499, 502, 505 |
| BseYI | CCCAGC | 3 cut(s) | 255, 360, 1375 |
| Bsh1236I | CGCG | 3 cut(s) | 342, 453, 589 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1104 |
| BshFI | GGCC | 5 cut(s) | 221, 254, 599, 1355, 1487 |
| BsiEI | CGRYCG | 1 cut(s) | 1104 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1387 |
| BslFI | GGGAC | 1 cut(s) | 1090 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 522, 553, 588 |
| BsmAI | GTCTC | 5 cut(s) | 179, 331, 521, 1129, 1722 |
| BsmBI | CGTCTC | 1 cut(s) | 331 |
| BsmFI | GGGAC | 1 cut(s) | 1090 |
| BsmI | GAATGC | 3 cut(s) | 898, 1102, 1422 |
| BsnI | GGCC | 5 cut(s) | 221, 254, 599, 1355, 1487 |
| Bso31I | GGTCTC | 3 cut(s) | 521, 1129, 1722 |
| BsoBI | CYCGRG | 1 cut(s) | 1387 |
| Bsp1286I | GDGCHC | 2 cut(s) | 377, 965 |
| Bsp13I | TCCGGA | 1 cut(s) | 399 |
| Bsp143I | GATC | 4 cut(s) | 439, 666, 1101, 1772 |
| Bsp19I | CCATGG | 1 cut(s) | 600 |
| BspANI | GGCC | 5 cut(s) | 221, 254, 599, 1355, 1487 |
| BspCNI | CTCAG | 2 cut(s) | 418, 1732 |
| BspEI | TCCGGA | 1 cut(s) | 399 |
| BspFNI | CGCG | 3 cut(s) | 342, 453, 589 |
| BspLI | GGNNCC | 1 cut(s) | 910 |
| BspMAI | CTGCAG | 2 cut(s) | 570, 627 |
| BspPI | GGATC | 1 cut(s) | 674 |
| BspTNI | GGTCTC | 3 cut(s) | 521, 1129, 1722 |
| BsrBI | CCGCTC | 2 cut(s) | 193, 477 |
| BsrFI | RCCGGY | 3 cut(s) | 272, 497, 1667 |
| BsrI | ACTGG | 1 cut(s) | 565 |
| BssAI | RCCGGY | 3 cut(s) | 272, 497, 1667 |
| BssECI | CCNNGG | 4 cut(s) | 600, 726, 946, 1290 |
| BssMI | GATC | 4 cut(s) | 439, 666, 1101, 1772 |
| BssNI | GRCGYC | 4 cut(s) | 345, 414, 480, 1622 |
| BssT1I | CCWWGG | 1 cut(s) | 600 |
| Bst2UI | CCWGG | 3 cut(s) | 230, 251, 947 |
| Bst4CI | ACNGT | 3 cut(s) | 244, 532, 1561 |
| Bst6I | CTCTTC | 3 cut(s) | 84, 473, 1458 |
| BstACI | GRCGYC | 4 cut(s) | 345, 414, 480, 1622 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1693 |
| BstC8I | GCNNGC | 8 cut(s) | 274, 357, 395, 499, 956, 965, 969, 1065 |
| BstDEI | CTNAG | 4 cut(s) | 405, 843, 1359, 1719 |
| BstDSI | CCRYGG | 2 cut(s) | 600, 726 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 520 |
| BstF5I | GGATG | 2 cut(s) | 1051, 1453 |
| BstFNI | CGCG | 3 cut(s) | 342, 453, 589 |
| BstH2I | RGCGCY | 4 cut(s) | 367, 582, 866, 1064 |
| BstHHI | GCGC | 6 cut(s) | 366, 581, 661, 865, 1063, 1090 |
| BstKTI | GATC | 4 cut(s) | 442, 669, 1104, 1775 |
| BstMAI | GTCTC | 5 cut(s) | 179, 331, 521, 1129, 1722 |
| BstMBI | GATC | 4 cut(s) | 439, 666, 1101, 1772 |
| BstMCI | CGRYCG | 1 cut(s) | 1104 |
| BstNI | CCWGG | 3 cut(s) | 230, 251, 947 |
| BstSCI | CCNGG | 6 cut(s) | 228, 249, 534, 827, 945, 958 |
| BstSFI | CTRYAG | 2 cut(s) | 566, 623 |
| BstUI | CGCG | 3 cut(s) | 342, 453, 589 |
| BstV2I | GAAGAC | 1 cut(s) | 41 |
| BstX2I | RGATCY | 1 cut(s) | 1772 |
| BstYI | RGATCY | 1 cut(s) | 1772 |
| BsuRI | GGCC | 5 cut(s) | 221, 254, 599, 1355, 1487 |
| BtgI | CCRYGG | 2 cut(s) | 600, 726 |
| BtsCI | GGATG | 2 cut(s) | 1051, 1453 |
| Cac8I | GCNNGC | 8 cut(s) | 274, 357, 395, 499, 956, 965, 969, 1065 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1693 |
| CfoI | GCGC | 6 cut(s) | 366, 581, 661, 865, 1063, 1090 |
| Cfr10I | RCCGGY | 3 cut(s) | 272, 497, 1667 |
| Cfr13I | GGNCC | 2 cut(s) | 219, 253 |
| CseI | GACGC | 3 cut(s) | 353, 469, 1611 |
| Csp6I | GTAC | 2 cut(s) | 1557, 1603 |
| CviAII | CATG | 2 cut(s) | 118, 601 |
| CviQI | GTAC | 2 cut(s) | 1557, 1603 |
| DdeI | CTNAG | 4 cut(s) | 405, 843, 1359, 1719 |
| DpnI | GATC | 4 cut(s) | 441, 668, 1103, 1774 |
| DpnII | GATC | 4 cut(s) | 439, 666, 1101, 1772 |
| EaeI | YGGCCR | 1 cut(s) | 597 |
| Eam1104I | CTCTTC | 3 cut(s) | 84, 473, 1458 |
| EarI | CTCTTC | 3 cut(s) | 84, 473, 1458 |
| EciI | GGCGGA | 3 cut(s) | 103, 797, 1416 |
| Eco130I | CCWWGG | 1 cut(s) | 600 |
| Eco147I | AGGCCT | 1 cut(s) | 1487 |
| Eco24I | GRGCYC | 2 cut(s) | 377, 965 |
| Eco31I | GGTCTC | 3 cut(s) | 521, 1129, 1722 |
| Eco47III | AGCGCT | 1 cut(s) | 365 |
| Eco57I | CTGAAG | 1 cut(s) | 487 |
| Eco88I | CYCGRG | 1 cut(s) | 1387 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 520 |
| EcoRII | CCWGG | 3 cut(s) | 228, 249, 945 |
| EcoT14I | CCWWGG | 1 cut(s) | 600 |
| EcoT38I | GRGCYC | 2 cut(s) | 377, 965 |
| ErhI | CCWWGG | 1 cut(s) | 600 |
| Esp3I | CGTCTC | 1 cut(s) | 331 |
| FaeI | CATG | 2 cut(s) | 121, 604 |
| FaiI | YATR | 6 cut(s) | 119, 146, 602, 941, 943, 1031 |
| FaqI | GGGAC | 1 cut(s) | 1090 |
| FatI | CATG | 2 cut(s) | 117, 600 |
| FauI | CCCGC | 2 cut(s) | 198, 1160 |
| FblI | GTMKAC | 3 cut(s) | 13, 1493, 1678 |
| FokI | GGATG | 2 cut(s) | 1058, 1460 |
| FriOI | GRGCYC | 2 cut(s) | 377, 965 |
| FspBI | CTAG | 2 cut(s) | 1305, 1395 |
| GlaI | GCGC | 6 cut(s) | 365, 580, 660, 864, 1062, 1089 |
| GsaI | CCCAGC | 3 cut(s) | 259, 364, 1379 |
| GsuI | CTGGAG | 3 cut(s) | 233, 895, 1244 |
| HaeII | RGCGCY | 4 cut(s) | 367, 582, 866, 1064 |
| HaeIII | GGCC | 5 cut(s) | 221, 254, 599, 1355, 1487 |
| HgaI | GACGC | 3 cut(s) | 353, 469, 1611 |
| HhaI | GCGC | 6 cut(s) | 366, 581, 661, 865, 1063, 1090 |
| Hin1I | GRCGYC | 4 cut(s) | 345, 414, 480, 1622 |
| Hin1II | CATG | 2 cut(s) | 121, 604 |
| Hin6I | GCGC | 6 cut(s) | 364, 579, 659, 863, 1061, 1088 |
| HinP1I | GCGC | 6 cut(s) | 364, 579, 659, 863, 1061, 1088 |
| HincII | GTYRAC | 1 cut(s) | 1494 |
| HindII | GTYRAC | 1 cut(s) | 1494 |
| HindIII | AAGCTT | 2 cut(s) | 686, 877 |
| HphI | GGTGA | 6 cut(s) | 232, 253, 568, 694, 1354, 1421 |
| Hpy166II | GTNNAC | 5 cut(s) | 14, 1156, 1369, 1494, 1679 |
| Hpy188I | TCNGA | 9 cut(s) | 184, 388, 408, 885, 1129, 1218, 1269, 1587, 1722 |
| Hpy188III | TCNNGA | 8 cut(s) | 400, 472, 692, 709, 821, 912, 1223, 1389 |
| Hpy8I | GTNNAC | 5 cut(s) | 14, 1156, 1369, 1494, 1679 |
| Hpy99I | CGWCG | 8 cut(s) | 12, 347, 392, 416, 419, 458, 491, 931 |
| HpyAV | CCTTC | 7 cut(s) | 214, 709, 880, 1034, 1393, 1535, 1587 |
| HpyCH4III | ACNGT | 3 cut(s) | 244, 532, 1561 |
| HpyCH4IV | ACGT | 3 cut(s) | 414, 642, 771 |
| HpyCH4V | TGCA | 6 cut(s) | 568, 625, 1249, 1422, 1647, 1687 |
| HpyF3I | CTNAG | 4 cut(s) | 405, 843, 1359, 1719 |
| HpySE526I | ACGT | 3 cut(s) | 414, 642, 771 |
| Hsp92I | GRCGYC | 4 cut(s) | 345, 414, 480, 1622 |
| Hsp92II | CATG | 2 cut(s) | 121, 604 |
| HspAI | GCGC | 6 cut(s) | 364, 579, 659, 863, 1061, 1088 |
| Kpn2I | TCCGGA | 1 cut(s) | 399 |
| KroI | GCCGGC | 2 cut(s) | 272, 497 |
| KroNI | GCCGGC | 2 cut(s) | 274, 499 |
| Kzo9I | GATC | 4 cut(s) | 439, 666, 1101, 1772 |
| LmnI | GCTCC | 5 cut(s) | 402, 512, 576, 618, 914 |
| LweI | GCATC | 1 cut(s) | 1236 |
| MaeI | CTAG | 2 cut(s) | 1305, 1395 |
| MaeII | ACGT | 3 cut(s) | 414, 642, 771 |
| MaeIII | GTNAC | 3 cut(s) | 556, 1300, 1623 |
| MalI | GATC | 4 cut(s) | 441, 668, 1103, 1774 |
| MbiI | CCGCTC | 2 cut(s) | 193, 477 |
| MboI | GATC | 4 cut(s) | 439, 666, 1101, 1772 |
| MflI | RGATCY | 1 cut(s) | 1772 |
| MhlI | GDGCHC | 2 cut(s) | 377, 965 |
| MluCI | AATT | 6 cut(s) | 379, 994, 1324, 1536, 1588, 1752 |
| MlyI | GAGTC | 4 cut(s) | 397, 593, 818, 1228 |
| MmeI | TCCRAC | 3 cut(s) | 318, 411, 1425 |
| MroI | TCCGGA | 1 cut(s) | 399 |
| MroNI | GCCGGC | 2 cut(s) | 272, 497 |
| MseI | TTAA | 5 cut(s) | 224, 813, 875, 1437, 1777 |
| MspA1I | CMGCKG | 1 cut(s) | 796 |
| MspR9I | CCNGG | 6 cut(s) | 230, 251, 536, 829, 947, 960 |
| Mva1269I | GAATGC | 3 cut(s) | 898, 1102, 1422 |
| MvaI | CCWGG | 3 cut(s) | 230, 251, 947 |
| MvnI | CGCG | 3 cut(s) | 342, 453, 589 |
| NaeI | GCCGGC | 2 cut(s) | 274, 499 |
| NciI | CCSGG | 3 cut(s) | 536, 829, 960 |
| NcoI | CCATGG | 1 cut(s) | 600 |
| NdeII | GATC | 4 cut(s) | 439, 666, 1101, 1772 |
| NgoMIV | GCCGGC | 2 cut(s) | 272, 497 |
| NlaIII | CATG | 2 cut(s) | 121, 604 |
| NlaIV | GGNNCC | 1 cut(s) | 910 |
| NmeAIII | GCCGAG | 3 cut(s) | 575, 607, 1315 |
| NmuCI | GTSAC | 3 cut(s) | 556, 1300, 1623 |
| PaeR7I | CTCGAG | 1 cut(s) | 1387 |
| PceI | AGGCCT | 1 cut(s) | 1487 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 435, 639, 746 |
| PctI | GAATGC | 3 cut(s) | 898, 1102, 1422 |
| PdiI | GCCGGC | 2 cut(s) | 274, 499 |
| PfeI | GAWTC | 7 cut(s) | 419, 463, 550, 695, 837, 1196, 1348 |
| PfoI | TCCNGGA | 1 cut(s) | 827 |
| Ple19I | CGATCG | 1 cut(s) | 1104 |
| PleI | GAGTC | 4 cut(s) | 397, 592, 818, 1227 |
| PpsI | GAGTC | 4 cut(s) | 397, 592, 818, 1227 |
| Psp1406I | AACGTT | 1 cut(s) | 771 |
| Psp6I | CCWGG | 3 cut(s) | 228, 249, 945 |
| PspFI | CCCAGC | 3 cut(s) | 255, 360, 1375 |
| PspGI | CCWGG | 3 cut(s) | 228, 249, 945 |
| PspN4I | GGNNCC | 1 cut(s) | 910 |
| PspPI | GGNCC | 2 cut(s) | 219, 253 |
| PstI | CTGCAG | 2 cut(s) | 570, 627 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1693 |
| PsuI | RGATCY | 1 cut(s) | 1772 |
| PvuI | CGATCG | 1 cut(s) | 1104 |
| RsaI | GTAC | 2 cut(s) | 1558, 1604 |
| RsaNI | GTAC | 2 cut(s) | 1557, 1603 |
| SalI | GTCGAC | 1 cut(s) | 1492 |
| SaqAI | TTAA | 5 cut(s) | 224, 813, 875, 1437, 1777 |
| Sau3AI | GATC | 4 cut(s) | 439, 666, 1101, 1772 |
| Sau96I | GGNCC | 2 cut(s) | 219, 253 |
| SchI | GAGTC | 4 cut(s) | 397, 593, 818, 1228 |
| ScrFI | CCNGG | 6 cut(s) | 230, 251, 536, 829, 947, 960 |
| SduI | GDGCHC | 2 cut(s) | 377, 965 |
| SfaNI | GCATC | 1 cut(s) | 1236 |
| SfcI | CTRYAG | 2 cut(s) | 566, 623 |
| Sfr274I | CTCGAG | 1 cut(s) | 1387 |
| SlaI | CTCGAG | 1 cut(s) | 1387 |
| SmlI | CTYRAG | 1 cut(s) | 1387 |
| SmoI | CTYRAG | 1 cut(s) | 1387 |
| Sse9I | AATT | 6 cut(s) | 379, 994, 1324, 1536, 1588, 1752 |
| SseBI | AGGCCT | 1 cut(s) | 1487 |
| SspI | AATATT | 1 cut(s) | 1027 |
| SspMI | CTAG | 2 cut(s) | 1305, 1395 |
| StuI | AGGCCT | 1 cut(s) | 1487 |
| StyD4I | CCNGG | 6 cut(s) | 228, 249, 534, 827, 945, 958 |
| StyI | CCWWGG | 1 cut(s) | 600 |
| TaaI | ACNGT | 3 cut(s) | 244, 532, 1561 |
| TaiI | ACGT | 3 cut(s) | 417, 645, 774 |
| TasI | AATT | 6 cut(s) | 379, 994, 1324, 1536, 1588, 1752 |
| TatI | WGTACW | 1 cut(s) | 1556 |
| TauI | GCSGC | 7 cut(s) | 480, 734, 782, 796, 921, 954, 1358 |
| TfiI | GAWTC | 7 cut(s) | 419, 463, 550, 695, 837, 1196, 1348 |
| Tru1I | TTAA | 5 cut(s) | 224, 813, 875, 1437, 1777 |
| Tru9I | TTAA | 5 cut(s) | 224, 813, 875, 1437, 1777 |
| TseFI | GTSAC | 3 cut(s) | 556, 1300, 1623 |
| Tsp45I | GTSAC | 3 cut(s) | 556, 1300, 1623 |
| TspDTI | ATGAA | 2 cut(s) | 134, 728 |
| TspGWI | ACGGA | 2 cut(s) | 35, 313 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 520 |
| XapI | RAATTY | 3 cut(s) | 994, 1588, 1752 |
| XhoI | CTCGAG | 1 cut(s) | 1387 |
| XmiI | GTMKAC | 3 cut(s) | 13, 1493, 1678 |
| XspI | CTAG | 2 cut(s) | 1305, 1395 |
| ZraI | GACGTC | 1 cut(s) | 415 |