Rmu_sc0007859.1_g000002

U-box domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007859.1
Physical Location & Seq
Forward (+)
2120 .. 3898
1779 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007859.1_g000002.1.cds

Sequence Viewer

Length: 1779 bp
atgtttcgtcgtctactcaaacccaacaccactcgcctcctcctccgtcttctctctctaaaccctaacacctcctctcttctttcttcttcttcttcttcttcttcctgttccgccatgaaagacccagaaaccaacaaccccatagccctctccacccacctcctcacttgtctctgctcggaaatcccgctcgtccaaaccttcaagggcaaatgggccttaatccaggcgaagctcaccgtcctccaggcccagctcaccgacttcgccggcttccccacctccacctccaaccctctcgccctcgacctcctcctgtccgtctcccacaccctccgcgacgccgtttcgctcgcccagcgctgccagagccccaatttttccgacggcaagctccggactcagagcgacgtcgattccattctcgccaagctcgatctccacctccgcgacggcgagattctcttccagagcggcgtcctcgacgacaccgccggcttcagctcctcctcctccaagagggagaccgtccgggcagagtgccggaatctggtgactgggctgcagattgggagcgccgagtcgcggaactcggccatggaagcgttgctcctgcttctgcaggaggacgataagaacgtgatgattgcggtggcgcaggggatcgttccggtgctggtgaagcttctcgattcgagcagtttcgagatgaaggagaacgccgtggcggcgatttcgatggtgtcgatggtggagagcagcaagaacgttctggcggcggaggggctgccgctgctaaatcacttggttaaggttctggactccgggagtggattcgctaaggagaagtcctgtgtggcgcttcaaggtttaagctttccgaaggagaatgcgagagcgattggctccagaggcggcatttcgtcgctgctggatatatgccagggcggcacgccgggctcgcaggctttggctgccggagtgttgaggaatttggctgcttttgatgagaacaaggagaatattatacaggaggaaggggatgtagttctgttggcgctggcgaaatcagggacggcattagcgcaggagaatgcgatcgggtgtttgtgtcatttggtctctgatagccaaagccagaagatttcggtttacaagcagggcgggattgagtgcttgaagaatatctgggattcggggtgtaataataatcggagtctggaggttgcggtggagttgctgatgcacttggcttcctgctctctgattgcggaaactcttgttgccgaggggtttgtcactaggattgttgaggtattgaattgtggtgtgttgggggtgaggattcaggccgctaaggcggtttacgagctggggttttgctcgagaactaggaaggagatgggtgaatgtggctgcattccgcctttggttaaaatgttggatggcaaagcattggaagagaaagaggctgccgtcaaggccttgtcgacattgttgctctttgctgacaataggaagatttttaggaaaattgaaggggggattgtgagtacagttcagcttttgaacccttctattcagaatttggataagaagtaccctgttgctgtgttggcgtcacttgtgcgttcaaagaagtgcaagaagcaaatggtggctgccggtgtgtgtctacatttgcagaaactgctcggtttggaagtagaggggtctcagaagctcttggaaagcctttgtcgtagtaaaatttggggtgtttttgccagatcttaa

Protein Analysis

592

Amino Acids

63.44

Weight (kDa)

8.31

Isoelectric Point (pI)

44.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0012216)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 417
AccBSI CCGCTC 2 cut(s) 193, 477
AccI GTMKAC 3 cut(s) 13, 1493, 1678
AccII CGCG 3 cut(s) 342, 453, 589
AccIII TCCGGA 1 cut(s) 399
AclI AACGTT 1 cut(s) 771
AclWI GGATC 1 cut(s) 674
AcoI YGGCCR 1 cut(s) 597
AcsI RAATTY 3 cut(s) 994, 1588, 1752
AcuI CTGAAG 1 cut(s) 487
AcyI GRCGYC 4 cut(s) 345, 414, 480, 1622
AfaI GTAC 2 cut(s) 1558, 1604
AfeI AGCGCT 1 cut(s) 365
AfiI CCNNNNNNNGG 3 cut(s) 522, 553, 588
AgsI TTSAA 7 cut(s) 208, 869, 1183, 1324, 1541, 1573, 1638
AjnI CCWGG 3 cut(s) 228, 249, 945
Alw26I GTCTC 5 cut(s) 179, 331, 521, 1129, 1722
AlwI GGATC 1 cut(s) 674
AlwNI CAGNNNCTG 1 cut(s) 1693
Ama87I CYCGRG 1 cut(s) 1387
Aor13HI TCCGGA 1 cut(s) 399
Aor51HI AGCGCT 1 cut(s) 365
AoxI GGCC 5 cut(s) 219, 252, 597, 1353, 1485
ApoI RAATTY 3 cut(s) 994, 1588, 1752
AspLEI GCGC 6 cut(s) 366, 581, 661, 865, 1063, 1090
AspS9I GGNCC 2 cut(s) 219, 253
AsuC2I CCSGG 3 cut(s) 536, 829, 960
AsuHPI GGTGA 6 cut(s) 232, 253, 568, 694, 1354, 1421
AvaI CYCGRG 1 cut(s) 1387
BanII GRGCYC 2 cut(s) 377, 965
BbsI GAAGAC 1 cut(s) 41
BccI CCATC 4 cut(s) 736, 745, 1399, 1442
BceAI ACGGC 6 cut(s) 332, 406, 472, 710, 1095, 1463
BcgI CGANNNNNNTGC 2 cut(s) 1483, 1517
BciT130I CCWGG 3 cut(s) 230, 251, 947
BcnI CCSGG 3 cut(s) 536, 829, 960
BcoDI GTCTC 5 cut(s) 179, 331, 521, 1129, 1722
BfaI CTAG 2 cut(s) 1305, 1395
BfmI CTRYAG 2 cut(s) 566, 623
BfoI RGCGCY 4 cut(s) 367, 582, 866, 1064
BglI GCCNNNNNGGC 4 cut(s) 731, 951, 1361, 1484
BglII AGATCT 1 cut(s) 1772
Bme1390I CCNGG 6 cut(s) 230, 251, 536, 829, 947, 960
BmeT110I CYCGRG 1 cut(s) 1387
BmgT120I GGNCC 2 cut(s) 219, 253
BmiI GGNNCC 1 cut(s) 910
BmrFI CCNGG 6 cut(s) 230, 251, 536, 829, 947, 960
BmrI ACTGGG 1 cut(s) 570
BmsI GCATC 1 cut(s) 1236
BmuI ACTGGG 1 cut(s) 570
BpiI GAAGAC 1 cut(s) 41
BpmI CTGGAG 3 cut(s) 233, 895, 1244
Bpu10I CCTNAGC 2 cut(s) 843, 1359
BpuMI CCSGG 3 cut(s) 536, 829, 960
BsaHI GRCGYC 4 cut(s) 345, 414, 480, 1622
BsaI GGTCTC 3 cut(s) 521, 1129, 1722
BsaJI CCNNGG 4 cut(s) 600, 726, 946, 1290
BsaWI WCCGGW 2 cut(s) 399, 673
Bsc4I CCNNNNNNNGG 3 cut(s) 522, 553, 588
Bse118I RCCGGY 3 cut(s) 272, 497, 1667
Bse1I ACTGG 1 cut(s) 565
BseAI TCCGGA 1 cut(s) 399
BseBI CCWGG 3 cut(s) 230, 251, 947
BseDI CCNNGG 4 cut(s) 600, 726, 946, 1290
BseGI GGATG 2 cut(s) 1051, 1453
BseLI CCNNNNNNNGG 3 cut(s) 522, 553, 588
BseMII CTCAG 2 cut(s) 419, 1733
BseNI ACTGG 1 cut(s) 565
BseRI GAGGAG 8 cut(s) 29, 32, 64, 155, 305, 499, 502, 505
BseYI CCCAGC 3 cut(s) 255, 360, 1375
Bsh1236I CGCG 3 cut(s) 342, 453, 589
Bsh1285I CGRYCG 1 cut(s) 1104
BshFI GGCC 5 cut(s) 221, 254, 599, 1355, 1487
BsiEI CGRYCG 1 cut(s) 1104
BsiHKCI CYCGRG 1 cut(s) 1387
BslFI GGGAC 1 cut(s) 1090
BslI CCNNNNNNNGG 3 cut(s) 522, 553, 588
BsmAI GTCTC 5 cut(s) 179, 331, 521, 1129, 1722
BsmBI CGTCTC 1 cut(s) 331
BsmFI GGGAC 1 cut(s) 1090
BsmI GAATGC 3 cut(s) 898, 1102, 1422
BsnI GGCC 5 cut(s) 221, 254, 599, 1355, 1487
Bso31I GGTCTC 3 cut(s) 521, 1129, 1722
BsoBI CYCGRG 1 cut(s) 1387
Bsp1286I GDGCHC 2 cut(s) 377, 965
Bsp13I TCCGGA 1 cut(s) 399
Bsp143I GATC 4 cut(s) 439, 666, 1101, 1772
Bsp19I CCATGG 1 cut(s) 600
BspANI GGCC 5 cut(s) 221, 254, 599, 1355, 1487
BspCNI CTCAG 2 cut(s) 418, 1732
BspEI TCCGGA 1 cut(s) 399
BspFNI CGCG 3 cut(s) 342, 453, 589
BspLI GGNNCC 1 cut(s) 910
BspMAI CTGCAG 2 cut(s) 570, 627
BspPI GGATC 1 cut(s) 674
BspTNI GGTCTC 3 cut(s) 521, 1129, 1722
BsrBI CCGCTC 2 cut(s) 193, 477
BsrFI RCCGGY 3 cut(s) 272, 497, 1667
BsrI ACTGG 1 cut(s) 565
BssAI RCCGGY 3 cut(s) 272, 497, 1667
BssECI CCNNGG 4 cut(s) 600, 726, 946, 1290
BssMI GATC 4 cut(s) 439, 666, 1101, 1772
BssNI GRCGYC 4 cut(s) 345, 414, 480, 1622
BssT1I CCWWGG 1 cut(s) 600
Bst2UI CCWGG 3 cut(s) 230, 251, 947
Bst4CI ACNGT 3 cut(s) 244, 532, 1561
Bst6I CTCTTC 3 cut(s) 84, 473, 1458
BstACI GRCGYC 4 cut(s) 345, 414, 480, 1622
BstAPI GCANNNNNTGC 1 cut(s) 1693
BstC8I GCNNGC 8 cut(s) 274, 357, 395, 499, 956, 965, 969, 1065
BstDEI CTNAG 4 cut(s) 405, 843, 1359, 1719
BstDSI CCRYGG 2 cut(s) 600, 726
BstENI CCTNNNNNAGG 1 cut(s) 520
BstF5I GGATG 2 cut(s) 1051, 1453
BstFNI CGCG 3 cut(s) 342, 453, 589
BstH2I RGCGCY 4 cut(s) 367, 582, 866, 1064
BstHHI GCGC 6 cut(s) 366, 581, 661, 865, 1063, 1090
BstKTI GATC 4 cut(s) 442, 669, 1104, 1775
BstMAI GTCTC 5 cut(s) 179, 331, 521, 1129, 1722
BstMBI GATC 4 cut(s) 439, 666, 1101, 1772
BstMCI CGRYCG 1 cut(s) 1104
BstNI CCWGG 3 cut(s) 230, 251, 947
BstSCI CCNGG 6 cut(s) 228, 249, 534, 827, 945, 958
BstSFI CTRYAG 2 cut(s) 566, 623
BstUI CGCG 3 cut(s) 342, 453, 589
BstV2I GAAGAC 1 cut(s) 41
BstX2I RGATCY 1 cut(s) 1772
BstYI RGATCY 1 cut(s) 1772
BsuRI GGCC 5 cut(s) 221, 254, 599, 1355, 1487
BtgI CCRYGG 2 cut(s) 600, 726
BtsCI GGATG 2 cut(s) 1051, 1453
Cac8I GCNNGC 8 cut(s) 274, 357, 395, 499, 956, 965, 969, 1065
CaiI CAGNNNCTG 1 cut(s) 1693
CfoI GCGC 6 cut(s) 366, 581, 661, 865, 1063, 1090
Cfr10I RCCGGY 3 cut(s) 272, 497, 1667
Cfr13I GGNCC 2 cut(s) 219, 253
CseI GACGC 3 cut(s) 353, 469, 1611
Csp6I GTAC 2 cut(s) 1557, 1603
CviAII CATG 2 cut(s) 118, 601
CviQI GTAC 2 cut(s) 1557, 1603
DdeI CTNAG 4 cut(s) 405, 843, 1359, 1719
DpnI GATC 4 cut(s) 441, 668, 1103, 1774
DpnII GATC 4 cut(s) 439, 666, 1101, 1772
EaeI YGGCCR 1 cut(s) 597
Eam1104I CTCTTC 3 cut(s) 84, 473, 1458
EarI CTCTTC 3 cut(s) 84, 473, 1458
EciI GGCGGA 3 cut(s) 103, 797, 1416
Eco130I CCWWGG 1 cut(s) 600
Eco147I AGGCCT 1 cut(s) 1487
Eco24I GRGCYC 2 cut(s) 377, 965
Eco31I GGTCTC 3 cut(s) 521, 1129, 1722
Eco47III AGCGCT 1 cut(s) 365
Eco57I CTGAAG 1 cut(s) 487
Eco88I CYCGRG 1 cut(s) 1387
EcoNI CCTNNNNNAGG 1 cut(s) 520
EcoRII CCWGG 3 cut(s) 228, 249, 945
EcoT14I CCWWGG 1 cut(s) 600
EcoT38I GRGCYC 2 cut(s) 377, 965
ErhI CCWWGG 1 cut(s) 600
Esp3I CGTCTC 1 cut(s) 331
FaeI CATG 2 cut(s) 121, 604
FaiI YATR 6 cut(s) 119, 146, 602, 941, 943, 1031
FaqI GGGAC 1 cut(s) 1090
FatI CATG 2 cut(s) 117, 600
FauI CCCGC 2 cut(s) 198, 1160
FblI GTMKAC 3 cut(s) 13, 1493, 1678
FokI GGATG 2 cut(s) 1058, 1460
FriOI GRGCYC 2 cut(s) 377, 965
FspBI CTAG 2 cut(s) 1305, 1395
GlaI GCGC 6 cut(s) 365, 580, 660, 864, 1062, 1089
GsaI CCCAGC 3 cut(s) 259, 364, 1379
GsuI CTGGAG 3 cut(s) 233, 895, 1244
HaeII RGCGCY 4 cut(s) 367, 582, 866, 1064
HaeIII GGCC 5 cut(s) 221, 254, 599, 1355, 1487
HgaI GACGC 3 cut(s) 353, 469, 1611
HhaI GCGC 6 cut(s) 366, 581, 661, 865, 1063, 1090
Hin1I GRCGYC 4 cut(s) 345, 414, 480, 1622
Hin1II CATG 2 cut(s) 121, 604
Hin6I GCGC 6 cut(s) 364, 579, 659, 863, 1061, 1088
HinP1I GCGC 6 cut(s) 364, 579, 659, 863, 1061, 1088
HincII GTYRAC 1 cut(s) 1494
HindII GTYRAC 1 cut(s) 1494
HindIII AAGCTT 2 cut(s) 686, 877
HphI GGTGA 6 cut(s) 232, 253, 568, 694, 1354, 1421
Hpy166II GTNNAC 5 cut(s) 14, 1156, 1369, 1494, 1679
Hpy188I TCNGA 9 cut(s) 184, 388, 408, 885, 1129, 1218, 1269, 1587, 1722
Hpy188III TCNNGA 8 cut(s) 400, 472, 692, 709, 821, 912, 1223, 1389
Hpy8I GTNNAC 5 cut(s) 14, 1156, 1369, 1494, 1679
Hpy99I CGWCG 8 cut(s) 12, 347, 392, 416, 419, 458, 491, 931
HpyAV CCTTC 7 cut(s) 214, 709, 880, 1034, 1393, 1535, 1587
HpyCH4III ACNGT 3 cut(s) 244, 532, 1561
HpyCH4IV ACGT 3 cut(s) 414, 642, 771
HpyCH4V TGCA 6 cut(s) 568, 625, 1249, 1422, 1647, 1687
HpyF3I CTNAG 4 cut(s) 405, 843, 1359, 1719
HpySE526I ACGT 3 cut(s) 414, 642, 771
Hsp92I GRCGYC 4 cut(s) 345, 414, 480, 1622
Hsp92II CATG 2 cut(s) 121, 604
HspAI GCGC 6 cut(s) 364, 579, 659, 863, 1061, 1088
Kpn2I TCCGGA 1 cut(s) 399
KroI GCCGGC 2 cut(s) 272, 497
KroNI GCCGGC 2 cut(s) 274, 499
Kzo9I GATC 4 cut(s) 439, 666, 1101, 1772
LmnI GCTCC 5 cut(s) 402, 512, 576, 618, 914
LweI GCATC 1 cut(s) 1236
MaeI CTAG 2 cut(s) 1305, 1395
MaeII ACGT 3 cut(s) 414, 642, 771
MaeIII GTNAC 3 cut(s) 556, 1300, 1623
MalI GATC 4 cut(s) 441, 668, 1103, 1774
MbiI CCGCTC 2 cut(s) 193, 477
MboI GATC 4 cut(s) 439, 666, 1101, 1772
MflI RGATCY 1 cut(s) 1772
MhlI GDGCHC 2 cut(s) 377, 965
MluCI AATT 6 cut(s) 379, 994, 1324, 1536, 1588, 1752
MlyI GAGTC 4 cut(s) 397, 593, 818, 1228
MmeI TCCRAC 3 cut(s) 318, 411, 1425
MroI TCCGGA 1 cut(s) 399
MroNI GCCGGC 2 cut(s) 272, 497
MseI TTAA 5 cut(s) 224, 813, 875, 1437, 1777
MspA1I CMGCKG 1 cut(s) 796
MspR9I CCNGG 6 cut(s) 230, 251, 536, 829, 947, 960
Mva1269I GAATGC 3 cut(s) 898, 1102, 1422
MvaI CCWGG 3 cut(s) 230, 251, 947
MvnI CGCG 3 cut(s) 342, 453, 589
NaeI GCCGGC 2 cut(s) 274, 499
NciI CCSGG 3 cut(s) 536, 829, 960
NcoI CCATGG 1 cut(s) 600
NdeII GATC 4 cut(s) 439, 666, 1101, 1772
NgoMIV GCCGGC 2 cut(s) 272, 497
NlaIII CATG 2 cut(s) 121, 604
NlaIV GGNNCC 1 cut(s) 910
NmeAIII GCCGAG 3 cut(s) 575, 607, 1315
NmuCI GTSAC 3 cut(s) 556, 1300, 1623
PaeR7I CTCGAG 1 cut(s) 1387
PceI AGGCCT 1 cut(s) 1487
PcsI WCGNNNNNNNCGW 3 cut(s) 435, 639, 746
PctI GAATGC 3 cut(s) 898, 1102, 1422
PdiI GCCGGC 2 cut(s) 274, 499
PfeI GAWTC 7 cut(s) 419, 463, 550, 695, 837, 1196, 1348
PfoI TCCNGGA 1 cut(s) 827
Ple19I CGATCG 1 cut(s) 1104
PleI GAGTC 4 cut(s) 397, 592, 818, 1227
PpsI GAGTC 4 cut(s) 397, 592, 818, 1227
Psp1406I AACGTT 1 cut(s) 771
Psp6I CCWGG 3 cut(s) 228, 249, 945
PspFI CCCAGC 3 cut(s) 255, 360, 1375
PspGI CCWGG 3 cut(s) 228, 249, 945
PspN4I GGNNCC 1 cut(s) 910
PspPI GGNCC 2 cut(s) 219, 253
PstI CTGCAG 2 cut(s) 570, 627
PstNI CAGNNNCTG 1 cut(s) 1693
PsuI RGATCY 1 cut(s) 1772
PvuI CGATCG 1 cut(s) 1104
RsaI GTAC 2 cut(s) 1558, 1604
RsaNI GTAC 2 cut(s) 1557, 1603
SalI GTCGAC 1 cut(s) 1492
SaqAI TTAA 5 cut(s) 224, 813, 875, 1437, 1777
Sau3AI GATC 4 cut(s) 439, 666, 1101, 1772
Sau96I GGNCC 2 cut(s) 219, 253
SchI GAGTC 4 cut(s) 397, 593, 818, 1228
ScrFI CCNGG 6 cut(s) 230, 251, 536, 829, 947, 960
SduI GDGCHC 2 cut(s) 377, 965
SfaNI GCATC 1 cut(s) 1236
SfcI CTRYAG 2 cut(s) 566, 623
Sfr274I CTCGAG 1 cut(s) 1387
SlaI CTCGAG 1 cut(s) 1387
SmlI CTYRAG 1 cut(s) 1387
SmoI CTYRAG 1 cut(s) 1387
Sse9I AATT 6 cut(s) 379, 994, 1324, 1536, 1588, 1752
SseBI AGGCCT 1 cut(s) 1487
SspI AATATT 1 cut(s) 1027
SspMI CTAG 2 cut(s) 1305, 1395
StuI AGGCCT 1 cut(s) 1487
StyD4I CCNGG 6 cut(s) 228, 249, 534, 827, 945, 958
StyI CCWWGG 1 cut(s) 600
TaaI ACNGT 3 cut(s) 244, 532, 1561
TaiI ACGT 3 cut(s) 417, 645, 774
TasI AATT 6 cut(s) 379, 994, 1324, 1536, 1588, 1752
TatI WGTACW 1 cut(s) 1556
TauI GCSGC 7 cut(s) 480, 734, 782, 796, 921, 954, 1358
TfiI GAWTC 7 cut(s) 419, 463, 550, 695, 837, 1196, 1348
Tru1I TTAA 5 cut(s) 224, 813, 875, 1437, 1777
Tru9I TTAA 5 cut(s) 224, 813, 875, 1437, 1777
TseFI GTSAC 3 cut(s) 556, 1300, 1623
Tsp45I GTSAC 3 cut(s) 556, 1300, 1623
TspDTI ATGAA 2 cut(s) 134, 728
TspGWI ACGGA 2 cut(s) 35, 313
XagI CCTNNNNNAGG 1 cut(s) 520
XapI RAATTY 3 cut(s) 994, 1588, 1752
XhoI CTCGAG 1 cut(s) 1387
XmiI GTMKAC 3 cut(s) 13, 1493, 1678
XspI CTAG 2 cut(s) 1305, 1395
ZraI GACGTC 1 cut(s) 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.