AT5G51680

Hydroxyproline-rich glycoprotein family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0016559
Physical Location & Seq
Forward (+)
20997320 .. 20998907
1588 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G51680.1

Sequence Viewer

Length: 1032 bp
ATGTCTGATATGGAACCAAAAGAAACAAAACCACCTCGAAAACAATTGAGACAGCCTCCTTCTGTTCCTTTCATTTGGGAAGAGCGGCCTGGCTTCCCCAAGAAGAATTGGCAACCTTCACTAGCCACTTTTGTGCCTTCTCCTCCTCCGCTTCCGCCACCTATCCCAGTCCCGGTTAAGCTGGTAACATCAGTTCCTTTCCGTTGGGAAGAAACGCCTGGAAAACCACTCCCTGCTTCCTCAAATGACCCACCTCAGCTTCCACATCCACCATTGGAAACCGCTACGCCGACTCCATTACCGCCTCCAGTTCCTGTTCCGGTTAAGCAGGTTACTTCGGTTCCTTTCGATTGGGAAGAAACTCCAGGACAACCATACCCATGCTTTGTTGATACCAGTCCACCTGAGCTGTTGGATCAACCGCTGCCACCGCCTCCCATGTACGGTGATGTTGAAACCAGCAGCGATATTTTTGATGATGCAAGCAGTGACTCCTTCAGCTCTGTGCCGTCTCTATTAGCAACAAACCGCTCGGTTTCGATATCCGGTGCTGTTGCGGTGGATGAATTTGATGACAACCTGAATACAGTGACTAGCTCGATGCCAACATCGCCAGCTTATGAATCTGATGACAGTACTAGCAGTTACATGACGGGAGCTTCCAGTCTTGTGGGAGCTTCGTTCTTGGAAAAGCTCTTTCCACGTCTTCTTCCATCAGAAAAGGTCAAAGCTGCTGTTTCTGAGGACGTTCAGGTTTCTACTCATCCGTTGCATGAAGAAGTGAAGCTTACTACAGAAACTGACAACATGAGTATTGGCTTTCCTGTGAGGACGCCACAGACACTCGGGGAGCTGATAATGATGAGCAGAAGGAGAAGTTATATGAGAAGAGCTGTTGAAATGAGAAAGCAGAATCCTTACACGGAATTTACAAAGAATGGAGCTGATAGCTGCTGCCTCTTTGTGCCGGGCATCAAAATGATAGAAGGCCTTGAGTGGAAAAAATACCAACCGAGGTTGAAGCTCATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF688

Protein Analysis

343

Amino Acids

37.92

Weight (kDa)

4.99

Isoelectric Point (pI)

73.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016559)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51680
fragaria_vesca FvH4_7g28270
prunus_persica Prupe.2G283000_v2.0.a1
pyrus_communis pycom01g19790
rosa_chinensis RchiOBHm_Chr1g0375221
rosa_laevigata RLG00000026678
rosa_multiflora Rmu_sc0000554.1_g000028
rosa_roxburghii Rroxscaffold_4G00282930
rosa_rugosa Rorug01G0389300
rosa_samantha Rh1AG400000 Rh1BG364600 Rh1CG377600 Rh1DG395200
rosa_wichuraiana Rw1G035510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 319
AccBSI CCGCTC 2 cut(s) 85, 531
AciI CCGC 9 cut(s) 85, 149, 155, 282, 302, 422, 431, 529, 557
AclWI GGATC 1 cut(s) 423
AcsI RAATTY 2 cut(s) 566, 926
AcuI CTGAAG 1 cut(s) 481
AcyI GRCGYC 1 cut(s) 833
AfaI GTAC 2 cut(s) 443, 637
AfiI CCNNNNNNNGG 2 cut(s) 172, 443
AgsI TTSAA 3 cut(s) 455, 899, 1021
AjiI CACGTC 1 cut(s) 704
AjnI CCWGG 3 cut(s) 88, 217, 364
AleI CACNNNNGTG 1 cut(s) 131
Alw26I GTCTC 2 cut(s) 43, 516
AlwI GGATC 1 cut(s) 423
AlwNI CAGNNNCTG 2 cut(s) 314, 800
Ama87I CYCGRG 1 cut(s) 845
AoxI GGCC 2 cut(s) 86, 988
ApeKI GCWGC 5 cut(s) 424, 462, 731, 951, 954
ApoI RAATTY 2 cut(s) 566, 926
AsuC2I CCSGG 2 cut(s) 173, 969
AsuHPI GGTGA 1 cut(s) 458
AvaI CYCGRG 1 cut(s) 845
BbsI GAAGAC 1 cut(s) 698
BbvCI CCTCAGC 1 cut(s) 255
BbvI GCAGC 5 cut(s) 411, 474, 718, 938, 941
BccI CCATC 1 cut(s) 721
BceAI ACGGC 1 cut(s) 493
BciT130I CCWGG 3 cut(s) 90, 219, 366
BcnI CCSGG 2 cut(s) 173, 969
BcoDI GTCTC 2 cut(s) 43, 516
BfaI CTAG 3 cut(s) 122, 594, 639
BfmI CTRYAG 1 cut(s) 792
BfuAI ACCTGC 1 cut(s) 319
BisI GCNGC 6 cut(s) 86, 425, 463, 732, 952, 955
BlsI GCNGC 6 cut(s) 87, 426, 464, 733, 953, 956
BmcAI AGTACT 1 cut(s) 637
Bme1390I CCNGG 5 cut(s) 90, 173, 219, 366, 969
BmeT110I CYCGRG 1 cut(s) 845
BmgBI CACGTC 1 cut(s) 704
BmiI GGNNCC 2 cut(s) 15, 342
BmrFI CCNGG 5 cut(s) 90, 173, 219, 366, 969
BmrI ACTGGG 1 cut(s) 161
BmsI GCATC 3 cut(s) 469, 591, 981
BmuI ACTGGG 1 cut(s) 161
BpiI GAAGAC 1 cut(s) 698
BplI GAGNNNNNCTC 2 cut(s) 40, 72
BpmI CTGGAG 2 cut(s) 291, 348
Bpu10I CCTNAGC 2 cut(s) 255, 405
BpuEI CTTGAG 1 cut(s) 1013
BpuMI CCSGG 2 cut(s) 173, 969
BsaHI GRCGYC 1 cut(s) 833
BsaJI CCNNGG 1 cut(s) 1013
BsaWI WCCGGW 2 cut(s) 319, 545
BsaXI ACNNNNNCTCC 2 cut(s) 277, 307
Bsc4I CCNNNNNNNGG 2 cut(s) 172, 443
Bse1I ACTGG 4 cut(s) 167, 308, 396, 663
BseBI CCWGG 3 cut(s) 90, 219, 366
BseDI CCNNGG 1 cut(s) 1013
BseGI GGATG 3 cut(s) 265, 568, 763
BseLI CCNNNNNNNGG 2 cut(s) 172, 443
BseMII CTCAG 3 cut(s) 269, 396, 732
BseNI ACTGG 4 cut(s) 167, 308, 396, 663
BseRI GAGGAG 2 cut(s) 132, 135
BseXI GCAGC 5 cut(s) 411, 474, 718, 938, 941
BshFI GGCC 2 cut(s) 88, 990
BsiHKCI CYCGRG 1 cut(s) 845
BsiSI CCGG 4 cut(s) 173, 320, 546, 968
BslFI GGGAC 1 cut(s) 155
BslI CCNNNNNNNGG 2 cut(s) 172, 443
BsmAI GTCTC 2 cut(s) 43, 516
BsmBI CGTCTC 1 cut(s) 516
BsmFI GGGAC 1 cut(s) 155
BsnI GGCC 2 cut(s) 88, 990
BsoBI CYCGRG 1 cut(s) 845
Bsp143I GATC 1 cut(s) 415
BspACI CCGC 9 cut(s) 85, 149, 155, 282, 302, 422, 431, 529, 557
BspANI GGCC 2 cut(s) 88, 990
BspCNI CTCAG 3 cut(s) 268, 397, 733
BspLI GGNNCC 2 cut(s) 15, 342
BspMI ACCTGC 1 cut(s) 319
BspPI GGATC 1 cut(s) 423
BspQI GCTCTTC 2 cut(s) 75, 883
BsrBI CCGCTC 2 cut(s) 85, 531
BsrI ACTGG 4 cut(s) 167, 308, 396, 663
BssECI CCNNGG 1 cut(s) 1013
BssMI GATC 1 cut(s) 415
BssNI GRCGYC 1 cut(s) 833
Bst2UI CCWGG 3 cut(s) 90, 219, 366
Bst4CI ACNGT 3 cut(s) 446, 589, 635
Bst6I CTCTTC 2 cut(s) 75, 883
BstACI GRCGYC 1 cut(s) 833
BstC8I GCNNGC 2 cut(s) 484, 615
BstDEI CTNAG 3 cut(s) 255, 405, 741
BstF5I GGATG 3 cut(s) 265, 568, 763
BstKTI GATC 1 cut(s) 418
BstMAI GTCTC 2 cut(s) 43, 516
BstMBI GATC 1 cut(s) 415
BstMWI GCNNNNNNNGC 2 cut(s) 430, 610
BstNI CCWGG 3 cut(s) 90, 219, 366
BstSCI CCNGG 5 cut(s) 88, 171, 217, 364, 967
BstSFI CTRYAG 1 cut(s) 792
BstV1I GCAGC 5 cut(s) 411, 474, 718, 938, 941
BstV2I GAAGAC 1 cut(s) 698
BstXI CCANNNNNNTGG 1 cut(s) 670
BsuRI GGCC 2 cut(s) 88, 990
BtgZI GCGATG 1 cut(s) 594
BtrI CACGTC 1 cut(s) 704
BtsCI GGATG 3 cut(s) 265, 568, 763
BtsI GCAGTG 1 cut(s) 493
BtsIMutI CAGTG 2 cut(s) 493, 594
BveI ACCTGC 1 cut(s) 319
Cac8I GCNNGC 2 cut(s) 484, 615
CaiI CAGNNNCTG 2 cut(s) 314, 800
CseI GACGC 1 cut(s) 841
Csp6I GTAC 2 cut(s) 442, 636
CviAII CATG 5 cut(s) 381, 439, 649, 773, 808
CviQI GTAC 2 cut(s) 442, 636
DdeI CTNAG 3 cut(s) 255, 405, 741
DpnI GATC 1 cut(s) 417
DpnII GATC 1 cut(s) 415
Eam1104I CTCTTC 2 cut(s) 75, 883
EarI CTCTTC 2 cut(s) 75, 883
EciI GGCGGA 1 cut(s) 144
Eco147I AGGCCT 1 cut(s) 990
Eco32I GATATC 1 cut(s) 543
Eco57I CTGAAG 1 cut(s) 481
Eco88I CYCGRG 1 cut(s) 845
EcoRII CCWGG 3 cut(s) 88, 217, 364
EcoRV GATATC 1 cut(s) 543
Esp3I CGTCTC 1 cut(s) 516
FaeI CATG 5 cut(s) 384, 442, 652, 776, 811
FalI AAGNNNNNCTT 2 cut(s) 771, 803
FaqI GGGAC 1 cut(s) 155
FatI CATG 5 cut(s) 380, 438, 648, 772, 807
Fnu4HI GCNGC 6 cut(s) 86, 425, 463, 732, 952, 955
FokI GGATG 3 cut(s) 252, 575, 750
Fsp4HI GCNGC 6 cut(s) 86, 425, 463, 732, 952, 955
FspBI CTAG 3 cut(s) 122, 594, 639
GluI GCNGC 6 cut(s) 86, 425, 463, 732, 952, 955
GsuI CTGGAG 2 cut(s) 291, 348
HaeIII GGCC 2 cut(s) 88, 990
HapII CCGG 4 cut(s) 173, 320, 546, 968
HgaI GACGC 1 cut(s) 841
Hin1I GRCGYC 1 cut(s) 833
Hin1II CATG 5 cut(s) 384, 442, 652, 776, 811
HindIII AAGCTT 1 cut(s) 785
HinfI GANTC 4 cut(s) 292, 491, 623, 913
HpaII CCGG 4 cut(s) 173, 320, 546, 968
HphI GGTGA 1 cut(s) 458
Hpy166II GTNNAC 1 cut(s) 401
Hpy188I TCNGA 4 cut(s) 7, 628, 718, 742
Hpy8I GTNNAC 1 cut(s) 401
HpyAV CCTTC 6 cut(s) 69, 126, 147, 505, 864, 980
HpyCH4III ACNGT 3 cut(s) 446, 589, 635
HpyCH4IV ACGT 2 cut(s) 703, 747
HpyCH4V TGCA 2 cut(s) 482, 772
HpyF10VI GCNNNNNNNGC 2 cut(s) 430, 610
HpyF3I CTNAG 3 cut(s) 255, 405, 741
HpySE526I ACGT 2 cut(s) 703, 747
Hsp92I GRCGYC 1 cut(s) 833
Hsp92II CATG 5 cut(s) 384, 442, 652, 776, 811
Kzo9I GATC 1 cut(s) 415
LguI GCTCTTC 2 cut(s) 75, 883
LmnI GCTCC 4 cut(s) 656, 674, 850, 941
Lsp1109I GCAGC 5 cut(s) 411, 474, 718, 938, 941
LweI GCATC 3 cut(s) 469, 591, 981
MaeI CTAG 3 cut(s) 122, 594, 639
MaeII ACGT 2 cut(s) 703, 747
MaeIII GTNAC 5 cut(s) 184, 331, 488, 589, 644
MalI GATC 1 cut(s) 417
MbiI CCGCTC 2 cut(s) 85, 531
MboI GATC 1 cut(s) 415
MboII GAAGA 8 cut(s) 92, 115, 221, 368, 698, 701, 788, 900
MfeI CAATTG 1 cut(s) 44
MluCI AATT 4 cut(s) 44, 106, 566, 926
MlyI GAGTC 2 cut(s) 286, 485
MmeI TCCRAC 1 cut(s) 393
MseI TTAA 2 cut(s) 177, 324
MslI CAYNNNNRTG 3 cut(s) 131, 379, 977
MspA1I CMGCKG 1 cut(s) 424
MspI CCGG 4 cut(s) 173, 320, 546, 968
MspR9I CCNGG 5 cut(s) 90, 173, 219, 366, 969
MunI CAATTG 1 cut(s) 44
MvaI CCWGG 3 cut(s) 90, 219, 366
MwoI GCNNNNNNNGC 2 cut(s) 430, 610
NciI CCSGG 2 cut(s) 173, 969
NdeII GATC 1 cut(s) 415
NlaIII CATG 5 cut(s) 384, 442, 652, 776, 811
NlaIV GGNNCC 2 cut(s) 15, 342
NmuCI GTSAC 2 cut(s) 488, 589
OliI CACNNNNGTG 1 cut(s) 131
PceI AGGCCT 1 cut(s) 990
PciSI GCTCTTC 2 cut(s) 75, 883
PfeI GAWTC 2 cut(s) 623, 913
PfoI TCCNGGA 1 cut(s) 364
PkrI GCNGC 6 cut(s) 87, 426, 464, 733, 953, 956
PleI GAGTC 2 cut(s) 286, 485
PpsI GAGTC 2 cut(s) 286, 485
Psp6I CCWGG 3 cut(s) 88, 217, 364
PspGI CCWGG 3 cut(s) 88, 217, 364
PspN4I GGNNCC 2 cut(s) 15, 342
PsrI GAACNNNNNNTAC 2 cut(s) 177, 209
PstNI CAGNNNCTG 2 cut(s) 314, 800
RsaI GTAC 2 cut(s) 443, 637
RsaNI GTAC 2 cut(s) 442, 636
RseI CAYNNNNRTG 3 cut(s) 131, 379, 977
SapI GCTCTTC 2 cut(s) 75, 883
SaqAI TTAA 2 cut(s) 177, 324
SatI GCNGC 6 cut(s) 86, 425, 463, 732, 952, 955
Sau3AI GATC 1 cut(s) 415
ScaI AGTACT 1 cut(s) 637
SchI GAGTC 2 cut(s) 286, 485
ScrFI CCNGG 5 cut(s) 90, 173, 219, 366, 969
SfaNI GCATC 3 cut(s) 469, 591, 981
SfcI CTRYAG 1 cut(s) 792
SmiMI CAYNNNNRTG 3 cut(s) 131, 379, 977
SmlI CTYRAG 1 cut(s) 992
SmoI CTYRAG 1 cut(s) 992
Sse9I AATT 4 cut(s) 44, 106, 566, 926
SseBI AGGCCT 1 cut(s) 990
SsiI CCGC 9 cut(s) 85, 149, 155, 282, 302, 422, 431, 529, 557
SspMI CTAG 3 cut(s) 122, 594, 639
StuI AGGCCT 1 cut(s) 990
StyD4I CCNGG 5 cut(s) 88, 171, 217, 364, 967
TaaI ACNGT 3 cut(s) 446, 589, 635
TaiI ACGT 2 cut(s) 706, 750
TaqI TCGA 4 cut(s) 37, 348, 539, 599
TasI AATT 4 cut(s) 44, 106, 566, 926
TatI WGTACW 1 cut(s) 635
TauI GCSGC 1 cut(s) 88
TfiI GAWTC 2 cut(s) 623, 913
Tru1I TTAA 2 cut(s) 177, 324
Tru9I TTAA 2 cut(s) 177, 324
TscAI CASTG 2 cut(s) 493, 594
TseFI GTSAC 2 cut(s) 488, 589
TseI GCWGC 5 cut(s) 424, 462, 731, 951, 954
Tsp45I GTSAC 2 cut(s) 488, 589
TspDTI ATGAA 4 cut(s) 61, 579, 636, 789
TspGWI ACGGA 3 cut(s) 191, 756, 938
TspRI CASTG 2 cut(s) 493, 594
XapI RAATTY 2 cut(s) 566, 926
XspI CTAG 3 cut(s) 122, 594, 639
ZrmI AGTACT 1 cut(s) 637
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.