FvH4_7g28270

Protein of unknown function (DUF688)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0016559
Physical Location & Seq
Forward (+)
20970121 .. 20971320
1200 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g28270.t1

Sequence Viewer

Length: 927 bp
ATGGCAACCTTCAACAAGAAGCAGGTAAGGGAACCACCTTCGGTACCATTTCTTTGGGAAGAAAGGCCAGGAATCCCTAAAAAAGACTGGAAACCGACGGTTTCTTCAAACAATGTAGCTCCAATCCCTCCGGTCAAGCTCATTGCCTCGGTGCCATTCATATGGGAAGAAAAGCCAGGAACTCCACTGCCATATTTCATGGAATCTTCATCAGAATCGGCAACGACTGAACCCATGATGCTCATCACTTACCCATCACCTCCAATATGCTCACAGCACAATGATCATGGAGGAGAAGAATACAGCGATGCCAGTAATGGAAATGATGATGGGGAAGATGAAATACAAAGTGTGTTCAAACTGGACATGCAAGCATTCGATTTTGAAACAGATGATTCATTTAGCTCGGCTCCTTCTCTGCTAGCAAACTGCCTTGTTTCATCATTGGCGATTTCCACTGCTGTTCCGGCGCCAGAAGATGAGAGTGATCAGACAGAGACAGACACACCTTCTTCACCATTGTCAGAAGCAGGCAGCAGTACAAGCAGTTATGCAACTGGAACTTCGAGCCTAGTCGGTGGTGCTTTTTTGGAATGCCTTTTTCCACTGCTTCCTGCCAAAGCTGGATTTCTTGAAAAGGTTGGCCATTCAGACAACCGCACTCTTACTCCACAAGCATCTAAGACTAAATACTTCGATCGTGAAACTAATGGTAGTGTCATTCTGAGGCCAAGAACACTGGGAGAGCTGATACTGATGAGCCGAAAGTGTAGTTACAGGAGGAAAGCTGTTCAAATGGGGAAACAGAATCTATCAAAGGAACTCATGATGAAGAATGCTTTCGGATGCTGCATCTTCGGAACTGGCAGCAAGATGATAGAAGGATTGCATAGCAAGAGGAAGAACTTACTTAGACTTCTGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF688

Protein Analysis

309

Amino Acids

33.7

Weight (kDa)

5.29

Isoelectric Point (pI)

56.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF688 PF05097 5 - 37 1.4e-06 Protein of unknown function (DUF688)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016559)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51680
fragaria_vesca FvH4_7g28270
prunus_persica Prupe.2G283000_v2.0.a1
pyrus_communis pycom01g19790
rosa_chinensis RchiOBHm_Chr1g0375221
rosa_laevigata RLG00000026678
rosa_multiflora Rmu_sc0000554.1_g000028
rosa_roxburghii Rroxscaffold_4G00282930
rosa_rugosa Rorug01G0389300
rosa_samantha Rh1AG400000 Rh1BG364600 Rh1CG377600 Rh1DG395200
rosa_wichuraiana Rw1G035510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 13
Acc65I GGTACC 1 cut(s) 43
AccB1I GGYRCC 3 cut(s) 43, 151, 469
AciI CCGC 1 cut(s) 658
AcoI YGGCCR 1 cut(s) 643
AcyI GRCGYC 1 cut(s) 470
AfaI GTAC 2 cut(s) 45, 541
AgsI TTSAA 6 cut(s) 13, 108, 358, 386, 635, 794
AjnI CCWGG 2 cut(s) 67, 175
AluBI AGCT 6 cut(s) 119, 139, 405, 623, 748, 788
AluI AGCT 6 cut(s) 119, 139, 405, 623, 748, 788
Alw26I GTCTC 1 cut(s) 491
AoxI GGCC 3 cut(s) 65, 643, 728
ApeKI GCWGC 3 cut(s) 534, 849, 867
Asp700I GAANNNNTTC 1 cut(s) 839
Asp718I GGTACC 1 cut(s) 43
AspLEI GCGC 1 cut(s) 472
AsuHPI GGTGA 2 cut(s) 249, 507
AsuNHI GCTAGC 1 cut(s) 421
BalI TGGCCA 1 cut(s) 645
BanI GGYRCC 3 cut(s) 43, 151, 469
BarI GAAGNNNNNNTAC 2 cut(s) 327, 359
BbvI GCAGC 3 cut(s) 546, 836, 879
BccI CCATC 2 cut(s) 262, 323
BciT130I CCWGG 2 cut(s) 69, 177
BclI TGATCA 2 cut(s) 283, 487
BcoDI GTCTC 1 cut(s) 491
BfaI CTAG 2 cut(s) 422, 572
BfoI RGCGCY 1 cut(s) 473
BfuAI ACCTGC 1 cut(s) 13
BisI GCNGC 3 cut(s) 535, 850, 868
BlsI GCNGC 3 cut(s) 536, 851, 869
Bme1390I CCNGG 2 cut(s) 69, 177
BmiI GGNNCC 5 cut(s) 33, 45, 153, 411, 471
BmrFI CCNGG 2 cut(s) 69, 177
BmrI ACTGGG 1 cut(s) 749
BmsI GCATC 5 cut(s) 228, 298, 686, 836, 861
BmtI GCTAGC 1 cut(s) 425
BmuI ACTGGG 1 cut(s) 749
BsaBI GATNNNNATC 1 cut(s) 242
BsaHI GRCGYC 1 cut(s) 470
BsaJI CCNNGG 1 cut(s) 147
BsaWI WCCGGW 1 cut(s) 130
BsaXI ACNNNNNCTCC 2 cut(s) 652, 682
Bse1I ACTGG 6 cut(s) 92, 312, 366, 562, 744, 868
Bse3DI GCAATG 1 cut(s) 141
Bse8I GATNNNNATC 1 cut(s) 242
BseBI CCWGG 2 cut(s) 69, 177
BseDI CCNNGG 1 cut(s) 147
BseGI GGATG 1 cut(s) 851
BseJI GATNNNNATC 1 cut(s) 242
BseMI GCAATG 1 cut(s) 141
BseMII CTCAG 1 cut(s) 716
BseNI ACTGG 6 cut(s) 92, 312, 366, 562, 744, 868
BseRI GAGGAG 1 cut(s) 306
BseXI GCAGC 3 cut(s) 546, 836, 879
Bsh1285I CGRYCG 1 cut(s) 700
BshFI GGCC 3 cut(s) 67, 645, 730
BshNI GGYRCC 3 cut(s) 43, 151, 469
BsiEI CGRYCG 1 cut(s) 700
BsiSI CCGG 2 cut(s) 131, 467
BsmAI GTCTC 1 cut(s) 491
BsmI GAATGC 3 cut(s) 374, 599, 841
BsnI GGCC 3 cut(s) 67, 645, 730
Bsp143I GATC 3 cut(s) 283, 487, 697
BspACI CCGC 1 cut(s) 658
BspANI GGCC 3 cut(s) 67, 645, 730
BspCNI CTCAG 1 cut(s) 717
BspHI TCATGA 1 cut(s) 825
BspLI GGNNCC 5 cut(s) 33, 45, 153, 411, 471
BspMI ACCTGC 1 cut(s) 13
BspOI GCTAGC 1 cut(s) 425
BspT107I GGYRCC 3 cut(s) 43, 151, 469
BsrDI GCAATG 1 cut(s) 141
BsrI ACTGG 6 cut(s) 92, 312, 366, 562, 744, 868
BssECI CCNNGG 1 cut(s) 147
BssMI GATC 3 cut(s) 283, 487, 697
BssNI GRCGYC 1 cut(s) 470
Bst2UI CCWGG 2 cut(s) 69, 177
Bst4CI ACNGT 1 cut(s) 100
BstACI GRCGYC 1 cut(s) 470
BstC8I GCNNGC 3 cut(s) 372, 423, 532
BstDEI CTNAG 3 cut(s) 681, 725, 911
BstF5I GGATG 1 cut(s) 851
BstH2I RGCGCY 1 cut(s) 473
BstHHI GCGC 1 cut(s) 472
BstKTI GATC 3 cut(s) 286, 490, 700
BstMAI GTCTC 1 cut(s) 491
BstMBI GATC 3 cut(s) 283, 487, 697
BstMCI CGRYCG 1 cut(s) 700
BstMWI GCNNNNNNNGC 2 cut(s) 467, 543
BstNI CCWGG 2 cut(s) 69, 177
BstNSI RCATGY 1 cut(s) 370
BstSCI CCNGG 2 cut(s) 67, 175
BstV1I GCAGC 3 cut(s) 546, 836, 879
BstXI CCANNNNNNTGG 2 cut(s) 54, 162
BsuRI GGCC 3 cut(s) 67, 645, 730
BtgZI GCGATG 1 cut(s) 321
BtsCI GGATG 1 cut(s) 851
BtsI GCAGTG 3 cut(s) 185, 456, 605
BtsIMutI CAGTG 4 cut(s) 185, 456, 605, 737
BveI ACCTGC 1 cut(s) 13
Cac8I GCNNGC 3 cut(s) 372, 423, 532
CciI TCATGA 1 cut(s) 825
CfoI GCGC 1 cut(s) 472
Csp6I GTAC 2 cut(s) 44, 540
CviAII CATG 5 cut(s) 199, 235, 287, 367, 826
CviQI GTAC 2 cut(s) 44, 540
DdeI CTNAG 3 cut(s) 681, 725, 911
DinI GGCGCC 1 cut(s) 471
DpnI GATC 3 cut(s) 285, 489, 699
DpnII GATC 3 cut(s) 283, 487, 697
EaeI YGGCCR 1 cut(s) 643
EcoRII CCWGG 2 cut(s) 67, 175
EgeI GGCGCC 1 cut(s) 471
EheI GGCGCC 1 cut(s) 471
FaeI CATG 5 cut(s) 202, 238, 290, 370, 829
FatI CATG 5 cut(s) 198, 234, 286, 366, 825
FauNDI CATATG 1 cut(s) 161
FbaI TGATCA 2 cut(s) 283, 487
Fnu4HI GCNGC 3 cut(s) 535, 850, 868
FokI GGATG 1 cut(s) 858
Fsp4HI GCNGC 3 cut(s) 535, 850, 868
FspBI CTAG 2 cut(s) 422, 572
GlaI GCGC 1 cut(s) 471
GluI GCNGC 3 cut(s) 535, 850, 868
HaeII RGCGCY 1 cut(s) 473
HaeIII GGCC 3 cut(s) 67, 645, 730
HapII CCGG 2 cut(s) 131, 467
HhaI GCGC 1 cut(s) 472
Hin1I GRCGYC 1 cut(s) 470
Hin1II CATG 5 cut(s) 202, 238, 290, 370, 829
Hin6I GCGC 1 cut(s) 470
HinP1I GCGC 1 cut(s) 470
HinfI GANTC 5 cut(s) 72, 203, 215, 395, 808
HpaII CCGG 2 cut(s) 131, 467
HphI GGTGA 2 cut(s) 249, 507
Hpy188I TCNGA 8 cut(s) 214, 492, 526, 652, 726, 845, 860, 921
Hpy188III TCNNGA 3 cut(s) 632, 701, 826
Hpy99I CGWCG 1 cut(s) 100
HpyAV CCTTC 5 cut(s) 19, 48, 423, 519, 875
HpyCH4III ACNGT 1 cut(s) 100
HpyCH4V TGCA 4 cut(s) 370, 554, 852, 889
HpyF10VI GCNNNNNNNGC 2 cut(s) 467, 543
HpyF3I CTNAG 3 cut(s) 681, 725, 911
Hsp92I GRCGYC 1 cut(s) 470
Hsp92II CATG 5 cut(s) 202, 238, 290, 370, 829
HspAI GCGC 1 cut(s) 470
KasI GGCGCC 1 cut(s) 469
KpnI GGTACC 1 cut(s) 47
Ksp22I TGATCA 2 cut(s) 283, 487
Kzo9I GATC 3 cut(s) 283, 487, 697
LmnI GCTCC 2 cut(s) 124, 415
Lsp1109I GCAGC 3 cut(s) 546, 836, 879
LweI GCATC 5 cut(s) 228, 298, 686, 836, 861
MaeI CTAG 2 cut(s) 422, 572
MaeIII GTNAC 1 cut(s) 773
MalI GATC 3 cut(s) 285, 489, 699
MboI GATC 3 cut(s) 283, 487, 697
MlsI TGGCCA 1 cut(s) 645
MluNI TGGCCA 1 cut(s) 645
Mly113I GGCGCC 1 cut(s) 470
MnlI CCTC 7 cut(s) 138, 157, 270, 284, 720, 774, 891
Mox20I TGGCCA 1 cut(s) 645
MroXI GAANNNNTTC 1 cut(s) 839
MscI TGGCCA 1 cut(s) 645
MslI CAYNNNNRTG 1 cut(s) 160
Msp20I TGGCCA 1 cut(s) 645
MspI CCGG 2 cut(s) 131, 467
MspR9I CCNGG 2 cut(s) 69, 177
Mva1269I GAATGC 3 cut(s) 374, 599, 841
MvaI CCWGG 2 cut(s) 69, 177
MwoI GCNNNNNNNGC 2 cut(s) 467, 543
NarI GGCGCC 1 cut(s) 470
NdeI CATATG 1 cut(s) 161
NdeII GATC 3 cut(s) 283, 487, 697
NheI GCTAGC 1 cut(s) 421
NlaIII CATG 5 cut(s) 202, 238, 290, 370, 829
NlaIV GGNNCC 5 cut(s) 33, 45, 153, 411, 471
NmeAIII GCCGAG 1 cut(s) 386
NspI RCATGY 1 cut(s) 370
PagI TCATGA 1 cut(s) 825
PctI GAATGC 3 cut(s) 374, 599, 841
PdmI GAANNNNTTC 1 cut(s) 839
PfeI GAWTC 5 cut(s) 72, 203, 215, 395, 808
PkrI GCNGC 3 cut(s) 536, 851, 869
Ple19I CGATCG 1 cut(s) 700
PluTI GGCGCC 1 cut(s) 473
Psp6I CCWGG 2 cut(s) 67, 175
PspGI CCWGG 2 cut(s) 67, 175
PspN4I GGNNCC 5 cut(s) 33, 45, 153, 411, 471
PvuI CGATCG 1 cut(s) 700
RsaI GTAC 2 cut(s) 45, 541
RsaNI GTAC 2 cut(s) 44, 540
RseI CAYNNNNRTG 1 cut(s) 160
SatI GCNGC 3 cut(s) 535, 850, 868
Sau3AI GATC 3 cut(s) 283, 487, 697
ScrFI CCNGG 2 cut(s) 69, 177
SfaNI GCATC 5 cut(s) 228, 298, 686, 836, 861
SfoI GGCGCC 1 cut(s) 471
SmiMI CAYNNNNRTG 1 cut(s) 160
SsiI CCGC 1 cut(s) 658
SspDI GGCGCC 1 cut(s) 469
SspMI CTAG 2 cut(s) 422, 572
StyD4I CCNGG 2 cut(s) 67, 175
TaaI ACNGT 1 cut(s) 100
TaqI TCGA 3 cut(s) 378, 566, 696
TatI WGTACW 1 cut(s) 539
TfiI GAWTC 5 cut(s) 72, 203, 215, 395, 808
TscAI CASTG 4 cut(s) 192, 463, 612, 744
TseI GCWGC 3 cut(s) 534, 849, 867
TspDTI ATGAA 7 cut(s) 148, 187, 198, 354, 387, 429, 845
TspRI CASTG 4 cut(s) 192, 463, 612, 744
XceI RCATGY 1 cut(s) 370
XmnI GAANNNNTTC 1 cut(s) 839
XspI CTAG 2 cut(s) 422, 572
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.