Prupe.2G283000_v2.0.a1

Protein of unknown function (DUF688)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0016559
Physical Location & Seq
Forward (+)
28103929 .. 28105098
1170 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G283000.1

Sequence Viewer

Length: 963 bp
ATGGCGGCAAACTCCAACAAGAAGCATCCAAGGGAACCGCCGGCAGTTCCATTTCTATGGGAAGAAAGGCCGGGAATACCTAAAAAAGACTGGAAACCACCAGTGGTTTCTTCAAATAGTTCATTTCCAGCTCCCCACATCGTCAAGCTTGTTGCCTCGGTTCCATTCAAATGGGAAGAAAAGCCAGGAACACCACTACCATCTTTCTCAGAACCAACATTGGAATCAGCATGTCCCTCCTCCCTACCACTGCAGCTTATCACTTTTCCATCACCTCCAATTAGCTCTCACCAGTATGATTATGATGGTGAGAACGAAGATTATGGTGATGATATTAGTGGAAATGGTGATGGAGAAGATGGAGCACCAAGTATGTTTAATTTGGAGCTTGAAGCATTCGATTTCGAAACAGATGATTCATTTATCTCAGCTCCTGCTCTCCTAGCAAACTGTCTTGTTCCATCAATAGCAATTTCCACTGCTGTTCCAGCAGACAAAAGCACACCAACAGAAGATAAGAGTGCTTGGCCTGAGACACCTTCCTCACCGGCCTCAGAAGCAGGCAGCAGTACAAGCAGCTATGCAACTGGAGTTTCAAGCCTGGTGGGGGCTTCGTTTTTGGAATGCCTCTTTCCATTGATTCCTGCCAATTCCGGATTTCTTGAAAAAATAGGCCAATCAGGCAACAGCTCTCTTACTCCACCAGAACCAAAGAGTGCACATTTTGATCGTGAAAGTAATGGCAGTGCCATTGTATGGAGGCCAAAAACACTCGGAGAGCTGATAATGATGAGTCGTAAGGGTAGTTACAGGAGGAAAGCTGTTCAAATGAGAAAACACAATCTATCAAAGGAACTCATGGAGAATAGAGCTTTTGGATGCTGCATCTTTGGACCTGGCATCAAGATGATAGAAGGATTGTACAGCAAGAGGAAGAACTTGCCAACACTTAAACTGGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF688

Protein Analysis

321

Amino Acids

34.6

Weight (kDa)

5.4

Isoelectric Point (pI)

59.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016559)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51680
fragaria_vesca FvH4_7g28270
prunus_persica Prupe.2G283000_v2.0.a1
pyrus_communis pycom01g19790
rosa_chinensis RchiOBHm_Chr1g0375221
rosa_laevigata RLG00000026678
rosa_multiflora Rmu_sc0000554.1_g000028
rosa_roxburghii Rroxscaffold_4G00282930
rosa_rugosa Rorug01G0389300
rosa_samantha Rh1AG400000 Rh1BG364600 Rh1CG377600 Rh1DG395200
rosa_wichuraiana Rw1G035510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 756
AccIII TCCGGA 1 cut(s) 653
AciI CCGC 2 cut(s) 5, 38
AfaI GTAC 2 cut(s) 571, 923
AfiI CCNNNNNNNGG 2 cut(s) 607, 756
AgsI TTSAA 6 cut(s) 114, 169, 392, 597, 665, 827
AjnI CCWGG 3 cut(s) 184, 600, 895
Alw21I GWGCWC 2 cut(s) 367, 721
Alw26I GTCTC 1 cut(s) 527
Alw44I GTGCAC 1 cut(s) 717
AlwNI CAGNNNCTG 1 cut(s) 434
Aor13HI TCCGGA 1 cut(s) 653
AoxI GGCC 5 cut(s) 68, 527, 549, 673, 761
ApaLI GTGCAC 1 cut(s) 717
ApeKI GCWGC 4 cut(s) 253, 564, 576, 882
AspS9I GGNCC 1 cut(s) 893
AsuC2I CCSGG 1 cut(s) 72
AsuHPI GGTGA 6 cut(s) 264, 281, 320, 338, 359, 537
AsuII TTCGAA 1 cut(s) 405
AvaII GGWCC 1 cut(s) 893
BaeGI GKGCMC 1 cut(s) 721
Bbv12I GWGCWC 2 cut(s) 367, 721
BbvI GCAGC 4 cut(s) 265, 576, 588, 869
BccI CCATC 6 cut(s) 208, 277, 299, 344, 353, 469
BciT130I CCWGG 3 cut(s) 186, 602, 897
BcnI CCSGG 1 cut(s) 72
BcoDI GTCTC 1 cut(s) 527
BfaI CTAG 1 cut(s) 443
BfmI CTRYAG 1 cut(s) 251
BglI GCCNNNNNGGC 1 cut(s) 681
BisI GCNGC 5 cut(s) 6, 254, 565, 577, 883
BlsI GCNGC 5 cut(s) 7, 255, 566, 578, 884
Bme1390I CCNGG 4 cut(s) 72, 186, 602, 897
Bme18I GGWCC 1 cut(s) 893
BmgT120I GGNCC 1 cut(s) 893
BmiI GGNNCC 2 cut(s) 36, 162
BmrFI CCNGG 4 cut(s) 72, 186, 602, 897
BmsI GCATC 4 cut(s) 34, 869, 894, 909
BpmI CTGGAG 1 cut(s) 609
Bpu14I TTCGAA 1 cut(s) 405
BpuMI CCSGG 1 cut(s) 72
BsaJI CCNNGG 2 cut(s) 29, 156
BsaWI WCCGGW 1 cut(s) 653
Bsc4I CCNNNNNNNGG 2 cut(s) 607, 756
Bse118I RCCGGY 2 cut(s) 40, 547
Bse1I ACTGG 5 cut(s) 95, 101, 292, 592, 960
BseAI TCCGGA 1 cut(s) 653
BseBI CCWGG 3 cut(s) 186, 602, 897
BseDI CCNNGG 2 cut(s) 29, 156
BseGI GGATG 2 cut(s) 25, 884
BseLI CCNNNNNNNGG 2 cut(s) 607, 756
BseMII CTCAG 4 cut(s) 222, 441, 522, 567
BseNI ACTGG 5 cut(s) 95, 101, 292, 592, 960
BseRI GAGGAG 1 cut(s) 229
BseSI GKGCMC 1 cut(s) 721
BseXI GCAGC 4 cut(s) 265, 576, 588, 869
BshFI GGCC 5 cut(s) 70, 529, 551, 675, 763
BsiHKAI GWGCWC 2 cut(s) 367, 721
BsiSI CCGG 4 cut(s) 41, 71, 548, 654
BslFI GGGAC 1 cut(s) 219
BslI CCNNNNNNNGG 2 cut(s) 607, 756
BsmAI GTCTC 1 cut(s) 527
BsmFI GGGAC 1 cut(s) 219
BsmI GAATGC 2 cut(s) 395, 629
BsnI GGCC 5 cut(s) 70, 529, 551, 675, 763
Bsp119I TTCGAA 1 cut(s) 405
Bsp1286I GDGCHC 2 cut(s) 367, 721
Bsp13I TCCGGA 1 cut(s) 653
Bsp1407I TGTACA 1 cut(s) 921
Bsp143I GATC 1 cut(s) 727
BspACI CCGC 2 cut(s) 5, 38
BspANI GGCC 5 cut(s) 70, 529, 551, 675, 763
BspCNI CTCAG 4 cut(s) 221, 440, 523, 566
BspEI TCCGGA 1 cut(s) 653
BspLI GGNNCC 2 cut(s) 36, 162
BspMAI CTGCAG 1 cut(s) 255
BspT104I TTCGAA 1 cut(s) 405
BsrFI RCCGGY 2 cut(s) 40, 547
BsrGI TGTACA 1 cut(s) 921
BsrI ACTGG 5 cut(s) 95, 101, 292, 592, 960
BssAI RCCGGY 2 cut(s) 40, 547
BssECI CCNNGG 2 cut(s) 29, 156
BssMI GATC 1 cut(s) 727
BssT1I CCWWGG 1 cut(s) 29
Bst2UI CCWGG 3 cut(s) 186, 602, 897
Bst4CI ACNGT 1 cut(s) 452
BstAUI TGTACA 1 cut(s) 921
BstBI TTCGAA 1 cut(s) 405
BstC8I GCNNGC 2 cut(s) 42, 562
BstDEI CTNAG 4 cut(s) 208, 427, 531, 553
BstF5I GGATG 2 cut(s) 25, 884
BstKTI GATC 1 cut(s) 730
BstMAI GTCTC 1 cut(s) 527
BstMBI GATC 1 cut(s) 727
BstMWI GCNNNNNNNGC 5 cut(s) 443, 488, 557, 573, 681
BstNI CCWGG 3 cut(s) 186, 602, 897
BstNSI RCATGY 1 cut(s) 234
BstSCI CCNGG 4 cut(s) 70, 184, 600, 895
BstSFI CTRYAG 1 cut(s) 251
BstSLI GKGCMC 1 cut(s) 721
BstV1I GCAGC 4 cut(s) 265, 576, 588, 869
BstXI CCANNNNNNTGG 2 cut(s) 57, 171
BsuRI GGCC 5 cut(s) 70, 529, 551, 675, 763
BtsCI GGATG 2 cut(s) 25, 884
BtsI GCAGTG 3 cut(s) 248, 477, 751
BtsIMutI CAGTG 4 cut(s) 108, 248, 477, 751
Cac8I GCNNGC 2 cut(s) 42, 562
CaiI CAGNNNCTG 1 cut(s) 434
Cfr10I RCCGGY 2 cut(s) 40, 547
Cfr13I GGNCC 1 cut(s) 893
Csp6I GTAC 2 cut(s) 570, 922
CspCI CAANNNNNGTGG 2 cut(s) 585, 620
CviAII CATG 2 cut(s) 231, 859
CviQI GTAC 2 cut(s) 570, 922
DdeI CTNAG 4 cut(s) 208, 427, 531, 553
DpnI GATC 1 cut(s) 729
DpnII GATC 1 cut(s) 727
Eco130I CCWWGG 1 cut(s) 29
Eco47I GGWCC 1 cut(s) 893
EcoRII CCWGG 3 cut(s) 184, 600, 895
EcoT14I CCWWGG 1 cut(s) 29
ErhI CCWWGG 1 cut(s) 29
FaeI CATG 2 cut(s) 234, 862
FaiI YATR 9 cut(s) 58, 232, 297, 303, 324, 374, 582, 757, 860
FaqI GGGAC 1 cut(s) 219
FatI CATG 2 cut(s) 230, 858
Fnu4HI GCNGC 5 cut(s) 6, 254, 565, 577, 883
FokI GGATG 2 cut(s) 12, 891
Fsp4HI GCNGC 5 cut(s) 6, 254, 565, 577, 883
FspBI CTAG 1 cut(s) 443
GluI GCNGC 5 cut(s) 6, 254, 565, 577, 883
GsuI CTGGAG 1 cut(s) 609
HaeIII GGCC 5 cut(s) 70, 529, 551, 675, 763
HapII CCGG 4 cut(s) 41, 71, 548, 654
Hin1II CATG 2 cut(s) 234, 862
HindIII AAGCTT 1 cut(s) 146
HinfI GANTC 4 cut(s) 224, 416, 640, 793
HpaII CCGG 4 cut(s) 41, 71, 548, 654
HphI GGTGA 6 cut(s) 264, 281, 320, 338, 359, 537
Hpy166II GTNNAC 1 cut(s) 719
Hpy188I TCNGA 4 cut(s) 211, 556, 776, 962
Hpy188III TCNNGA 4 cut(s) 654, 662, 731, 904
Hpy8I GTNNAC 1 cut(s) 719
HpyAV CCTTC 2 cut(s) 549, 908
HpyCH4III ACNGT 1 cut(s) 452
HpyCH4V TGCA 4 cut(s) 253, 584, 719, 885
HpyF10VI GCNNNNNNNGC 5 cut(s) 443, 488, 557, 573, 681
HpyF3I CTNAG 4 cut(s) 208, 427, 531, 553
Hsp92II CATG 2 cut(s) 234, 862
Kpn2I TCCGGA 1 cut(s) 653
KroI GCCGGC 1 cut(s) 40
KroNI GCCGGC 1 cut(s) 42
Kzo9I GATC 1 cut(s) 727
LmnI GCTCC 4 cut(s) 136, 362, 385, 436
Lsp1109I GCAGC 4 cut(s) 265, 576, 588, 869
LweI GCATC 4 cut(s) 34, 869, 894, 909
MaeI CTAG 1 cut(s) 443
MaeIII GTNAC 1 cut(s) 806
MalI GATC 1 cut(s) 729
MboI GATC 1 cut(s) 727
MboII GAAGA 7 cut(s) 74, 102, 188, 329, 368, 524, 946
MhlI GDGCHC 2 cut(s) 367, 721
MluCI AATT 4 cut(s) 279, 379, 471, 649
MlyI GAGTC 1 cut(s) 802
MmeI TCCRAC 1 cut(s) 39
MroI TCCGGA 1 cut(s) 653
MroNI GCCGGC 1 cut(s) 40
MseI TTAA 2 cut(s) 378, 951
MslI CAYNNNNRTG 4 cut(s) 55, 169, 294, 905
MspI CCGG 4 cut(s) 41, 71, 548, 654
MspR9I CCNGG 4 cut(s) 72, 186, 602, 897
Mva1269I GAATGC 2 cut(s) 395, 629
MvaI CCWGG 3 cut(s) 186, 602, 897
MwoI GCNNNNNNNGC 5 cut(s) 443, 488, 557, 573, 681
NaeI GCCGGC 1 cut(s) 42
NciI CCSGG 1 cut(s) 72
NdeII GATC 1 cut(s) 727
NgoMIV GCCGGC 1 cut(s) 40
NlaIII CATG 2 cut(s) 234, 862
NlaIV GGNNCC 2 cut(s) 36, 162
NspI RCATGY 1 cut(s) 234
NspV TTCGAA 1 cut(s) 405
PctI GAATGC 2 cut(s) 395, 629
PdiI GCCGGC 1 cut(s) 42
PfeI GAWTC 3 cut(s) 224, 416, 640
PflMI CCANNNNNTGG 1 cut(s) 756
PkrI GCNGC 5 cut(s) 7, 255, 566, 578, 884
PleI GAGTC 1 cut(s) 801
PpsI GAGTC 1 cut(s) 801
Psp6I CCWGG 3 cut(s) 184, 600, 895
PspGI CCWGG 3 cut(s) 184, 600, 895
PspN4I GGNNCC 2 cut(s) 36, 162
PspPI GGNCC 1 cut(s) 893
PstI CTGCAG 1 cut(s) 255
PstNI CAGNNNCTG 1 cut(s) 434
RsaI GTAC 2 cut(s) 571, 923
RsaNI GTAC 2 cut(s) 570, 922
RseI CAYNNNNRTG 4 cut(s) 55, 169, 294, 905
SaqAI TTAA 2 cut(s) 378, 951
SatI GCNGC 5 cut(s) 6, 254, 565, 577, 883
Sau3AI GATC 1 cut(s) 727
Sau96I GGNCC 1 cut(s) 893
SchI GAGTC 1 cut(s) 802
ScrFI CCNGG 4 cut(s) 72, 186, 602, 897
SduI GDGCHC 2 cut(s) 367, 721
SfaNI GCATC 4 cut(s) 34, 869, 894, 909
SfcI CTRYAG 1 cut(s) 251
SfuI TTCGAA 1 cut(s) 405
SinI GGWCC 1 cut(s) 893
SmiMI CAYNNNNRTG 4 cut(s) 55, 169, 294, 905
Sse9I AATT 4 cut(s) 279, 379, 471, 649
SsiI CCGC 2 cut(s) 5, 38
SspMI CTAG 1 cut(s) 443
StyD4I CCNGG 4 cut(s) 70, 184, 600, 895
StyI CCWWGG 1 cut(s) 29
TaaI ACNGT 1 cut(s) 452
TaqI TCGA 2 cut(s) 399, 405
TasI AATT 4 cut(s) 279, 379, 471, 649
TatI WGTACW 2 cut(s) 569, 921
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 3 cut(s) 224, 416, 640
Tru1I TTAA 2 cut(s) 378, 951
Tru9I TTAA 2 cut(s) 378, 951
TscAI CASTG 4 cut(s) 108, 255, 484, 751
TseI GCWGC 4 cut(s) 253, 564, 576, 882
TspDTI ATGAA 2 cut(s) 111, 408
TspRI CASTG 4 cut(s) 108, 255, 484, 751
Van91I CCANNNNNTGG 1 cut(s) 756
VneI GTGCAC 1 cut(s) 717
VpaK11BI GGWCC 1 cut(s) 893
XceI RCATGY 1 cut(s) 234
XspI CTAG 1 cut(s) 443
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.