Rorug01G0389300

Protein of unknown function (DUF688)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0016559
Physical Location & Seq
Reverse (-)
50040820 .. 50041866
1047 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0389300.1

Sequence Viewer

Length: 438 bp
ATGGCGAGTCTATGGCGGGCCGCGACGGCCCTGACGGAGAAGGCCGACGACCACGACGGCGTGGAGTTCTGGTCAAACCCGGAGCGGACGGGGTGGTTGACCAAACAAGGCGAGTACATAAAGACGTGGCGTCGCCGGTGGTTCGTTCTGAAGCAAGGGAAGCTGTTCTGGTTCAAGGACTCCGCCGTCACGCGCGCGTCGAGGACACGCGGCGTGATCCCGGTGGCCACGTGCCTGACGGTGAAGGGCGCGGAGGACGTGCTGAACAAGCAGTACGCCTTCGAGCTCTCCACGCGCTCCGAGACCATGTACTTCATCGCCGACTCCGAGAAGGAGAAGGAGGACTGGATCAACTCGATCGGACGGTCGATCGTGCAGCACTCGAGGTCGGTCACCGACTCCGAGGTCGTCGATTACGATAGCAACAACAAGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF688

Protein Analysis

145

Amino Acids

16.79

Weight (kDa)

7.83

Isoelectric Point (pI)

55.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PH PF00169 28 - 124 2.1e-20 PH domain
PH_11 PF15413 35 - 121 5.5e-06 Pleckstrin homology domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016559)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51680
fragaria_vesca FvH4_7g28270
prunus_persica Prupe.2G283000_v2.0.a1
pyrus_communis pycom01g19790
rosa_chinensis RchiOBHm_Chr1g0375221
rosa_laevigata RLG00000026678
rosa_multiflora Rmu_sc0000554.1_g000028
rosa_roxburghii Rroxscaffold_4G00282930
rosa_rugosa Rorug01G0389300
rosa_samantha Rh1AG400000 Rh1BG364600 Rh1CG377600 Rh1DG395200
rosa_wichuraiana Rw1G035510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 185, 404
AccBSI CCGCTC 1 cut(s) 85
AccII CGCG 7 cut(s) 23, 193, 195, 197, 210, 251, 295
AciI CCGC 6 cut(s) 16, 21, 85, 183, 210, 251
AclWI GGATC 2 cut(s) 211, 356
AcoI YGGCCR 1 cut(s) 225
AcuI CTGAAG 1 cut(s) 170
AcvI CACGTG 1 cut(s) 231
AcyI GRCGYC 1 cut(s) 130
AfaI GTAC 3 cut(s) 116, 275, 311
AgsI TTSAA 1 cut(s) 175
AhdI GACNNNNNGTC 1 cut(s) 129
AjiI CACGTC 2 cut(s) 126, 259
AluBI AGCT 2 cut(s) 163, 286
AluI AGCT 2 cut(s) 163, 286
Alw21I GWGCWC 1 cut(s) 288
Alw26I GTCTC 1 cut(s) 296
AlwI GGATC 2 cut(s) 211, 356
Ama87I CYCGRG 1 cut(s) 382
AoxI GGCC 4 cut(s) 18, 27, 42, 225
ApeKI GCWGC 1 cut(s) 376
Asp700I GAANNNNTTC 1 cut(s) 164
AspLEI GCGC 4 cut(s) 195, 197, 251, 297
AspS9I GGNCC 2 cut(s) 18, 28
AsuC2I CCSGG 2 cut(s) 80, 221
AsuHPI GGTGA 2 cut(s) 253, 385
AvaI CYCGRG 1 cut(s) 382
BalI TGGCCA 1 cut(s) 227
BanII GRGCYC 1 cut(s) 288
BbrPI CACGTG 1 cut(s) 231
Bbv12I GWGCWC 1 cut(s) 288
BbvI GCAGC 1 cut(s) 388
BceAI ACGGC 3 cut(s) 42, 73, 170
BcnI CCSGG 2 cut(s) 80, 221
BcoDI GTCTC 1 cut(s) 296
BglI GCCNNNNNGGC 1 cut(s) 26
BisI GCNGC 3 cut(s) 21, 211, 377
BlsI GCNGC 3 cut(s) 22, 212, 378
Bme1390I CCNGG 2 cut(s) 80, 221
BmeRI GACNNNNNGTC 1 cut(s) 129
BmeT110I CYCGRG 1 cut(s) 382
BmgBI CACGTC 2 cut(s) 126, 259
BmgT120I GGNCC 2 cut(s) 18, 28
BmrFI CCNGG 2 cut(s) 80, 221
BpuMI CCSGG 2 cut(s) 80, 221
BsaAI YACGTR 1 cut(s) 231
BsaHI GRCGYC 1 cut(s) 130
BsaI GGTCTC 1 cut(s) 296
BsaJI CCNNGG 1 cut(s) 402
BsaXI ACNNNNNCTCC 2 cut(s) 56, 86
Bse118I RCCGGY 1 cut(s) 135
Bse1I ACTGG 1 cut(s) 350
BseDI CCNNGG 1 cut(s) 402
BseNI ACTGG 1 cut(s) 350
BsePI GCGCGC 1 cut(s) 193
BseXI GCAGC 1 cut(s) 388
BsgI GTGCAG 1 cut(s) 395
Bsh1236I CGCG 7 cut(s) 23, 193, 195, 197, 210, 251, 295
Bsh1285I CGRYCG 3 cut(s) 360, 368, 372
BshFI GGCC 4 cut(s) 20, 29, 44, 227
BsiEI CGRYCG 3 cut(s) 360, 368, 372
BsiHKAI GWGCWC 1 cut(s) 288
BsiHKCI CYCGRG 1 cut(s) 382
BsiSI CCGG 3 cut(s) 80, 136, 221
BsmAI GTCTC 1 cut(s) 296
BsnI GGCC 4 cut(s) 20, 29, 44, 227
Bso31I GGTCTC 1 cut(s) 296
BsoBI CYCGRG 1 cut(s) 382
Bsp1286I GDGCHC 1 cut(s) 288
Bsp143I GATC 4 cut(s) 216, 348, 357, 369
BspACI CCGC 6 cut(s) 16, 21, 85, 183, 210, 251
BspANI GGCC 4 cut(s) 20, 29, 44, 227
BspFNI CGCG 7 cut(s) 23, 193, 195, 197, 210, 251, 295
BspPI GGATC 2 cut(s) 211, 356
BspTNI GGTCTC 1 cut(s) 296
BsrBI CCGCTC 1 cut(s) 85
BsrFI RCCGGY 1 cut(s) 135
BsrI ACTGG 1 cut(s) 350
BssAI RCCGGY 1 cut(s) 135
BssECI CCNNGG 1 cut(s) 402
BssHII GCGCGC 1 cut(s) 193
BssMI GATC 4 cut(s) 216, 348, 357, 369
BssNI GRCGYC 1 cut(s) 130
Bst4CI ACNGT 2 cut(s) 241, 366
BstACI GRCGYC 1 cut(s) 130
BstBAI YACGTR 1 cut(s) 231
BstC8I GCNNGC 2 cut(s) 18, 195
BstEII GGTNACC 1 cut(s) 391
BstFNI CGCG 7 cut(s) 23, 193, 195, 197, 210, 251, 295
BstHHI GCGC 4 cut(s) 195, 197, 251, 297
BstKTI GATC 4 cut(s) 219, 351, 360, 372
BstMAI GTCTC 1 cut(s) 296
BstMBI GATC 4 cut(s) 216, 348, 357, 369
BstMCI CGRYCG 3 cut(s) 360, 368, 372
BstMWI GCNNNNNNNGC 4 cut(s) 26, 160, 268, 292
BstPI GGTNACC 1 cut(s) 391
BstSCI CCNGG 2 cut(s) 78, 219
BstUI CGCG 7 cut(s) 23, 193, 195, 197, 210, 251, 295
BstV1I GCAGC 1 cut(s) 388
BsuRI GGCC 4 cut(s) 20, 29, 44, 227
BtgZI GCGATG 1 cut(s) 301
BtrI CACGTC 2 cut(s) 126, 259
Cac8I GCNNGC 2 cut(s) 18, 195
CfoI GCGC 4 cut(s) 195, 197, 251, 297
Cfr10I RCCGGY 1 cut(s) 135
Cfr13I GGNCC 2 cut(s) 18, 28
CseI GACGC 2 cut(s) 119, 186
Csp6I GTAC 3 cut(s) 115, 274, 310
CviAII CATG 1 cut(s) 307
CviJI RGCY 6 cut(s) 20, 29, 44, 163, 227, 286
CviKI_1 RGCY 6 cut(s) 20, 29, 44, 163, 227, 286
CviQI GTAC 3 cut(s) 115, 274, 310
DpnI GATC 4 cut(s) 218, 350, 359, 371
DpnII GATC 4 cut(s) 216, 348, 357, 369
DrdI GACNNNNNNGTC 2 cut(s) 185, 404
DriI GACNNNNNGTC 1 cut(s) 129
DseDI GACNNNNNNGTC 2 cut(s) 185, 404
EaeI YGGCCR 1 cut(s) 225
Eam1105I GACNNNNNGTC 1 cut(s) 129
EciI GGCGGA 1 cut(s) 172
Ecl136II GAGCTC 1 cut(s) 286
Eco24I GRGCYC 1 cut(s) 288
Eco31I GGTCTC 1 cut(s) 296
Eco53kI GAGCTC 1 cut(s) 286
Eco57I CTGAAG 1 cut(s) 170
Eco72I CACGTG 1 cut(s) 231
Eco88I CYCGRG 1 cut(s) 382
Eco91I GGTNACC 1 cut(s) 391
EcoICRI GAGCTC 1 cut(s) 286
EcoO65I GGTNACC 1 cut(s) 391
EcoT38I GRGCYC 1 cut(s) 288
FaeI CATG 1 cut(s) 310
FaiI YATR 3 cut(s) 13, 119, 308
FatI CATG 1 cut(s) 306
FauI CCCGC 1 cut(s) 9
Fnu4HI GCNGC 3 cut(s) 21, 211, 377
FriOI GRGCYC 1 cut(s) 288
Fsp4HI GCNGC 3 cut(s) 21, 211, 377
GlaI GCGC 4 cut(s) 194, 196, 250, 296
GluI GCNGC 3 cut(s) 21, 211, 377
HaeIII GGCC 4 cut(s) 20, 29, 44, 227
HapII CCGG 3 cut(s) 80, 136, 221
HgaI GACGC 2 cut(s) 119, 186
HhaI GCGC 4 cut(s) 195, 197, 251, 297
Hin1I GRCGYC 1 cut(s) 130
Hin1II CATG 1 cut(s) 310
Hin6I GCGC 4 cut(s) 193, 195, 249, 295
HinP1I GCGC 4 cut(s) 193, 195, 249, 295
HincII GTYRAC 1 cut(s) 99
HindII GTYRAC 1 cut(s) 99
HinfI GANTC 4 cut(s) 7, 179, 323, 398
HpaII CCGG 3 cut(s) 80, 136, 221
HphI GGTGA 2 cut(s) 253, 385
Hpy166II GTNNAC 1 cut(s) 99
Hpy188I TCNGA 5 cut(s) 150, 301, 328, 362, 403
Hpy8I GTNNAC 1 cut(s) 99
Hpy99I CGWCG 6 cut(s) 28, 50, 59, 135, 202, 413
HpyAV CCTTC 5 cut(s) 34, 238, 289, 325, 331
HpyCH4III ACNGT 2 cut(s) 241, 366
HpyCH4IV ACGT 3 cut(s) 125, 230, 258
HpyCH4V TGCA 1 cut(s) 376
HpyF10VI GCNNNNNNNGC 4 cut(s) 26, 160, 268, 292
HpySE526I ACGT 3 cut(s) 125, 230, 258
Hsp92I GRCGYC 1 cut(s) 130
Hsp92II CATG 1 cut(s) 310
HspAI GCGC 4 cut(s) 193, 195, 249, 295
Kzo9I GATC 4 cut(s) 216, 348, 357, 369
LmnI GCTCC 2 cut(s) 82, 302
LpnPI CCDG 8 cut(s) 44, 55, 93, 149, 154, 234, 248, 331
Lsp1109I GCAGC 1 cut(s) 388
MaeII ACGT 3 cut(s) 125, 230, 258
MaeIII GTNAC 2 cut(s) 187, 391
MalI GATC 4 cut(s) 218, 350, 359, 371
MauBI CGCGCGCG 1 cut(s) 193
MbiI CCGCTC 1 cut(s) 85
MboI GATC 4 cut(s) 216, 348, 357, 369
MhlI GDGCHC 1 cut(s) 288
MlsI TGGCCA 1 cut(s) 227
MluNI TGGCCA 1 cut(s) 227
MlyI GAGTC 4 cut(s) 16, 173, 317, 392
MnlI CCTC 5 cut(s) 195, 247, 334, 378, 397
Mox20I TGGCCA 1 cut(s) 227
MroXI GAANNNNTTC 1 cut(s) 164
MscI TGGCCA 1 cut(s) 227
Msp20I TGGCCA 1 cut(s) 227
MspI CCGG 3 cut(s) 80, 136, 221
MspR9I CCNGG 2 cut(s) 80, 221
MvnI CGCG 7 cut(s) 23, 193, 195, 197, 210, 251, 295
MwoI GCNNNNNNNGC 4 cut(s) 26, 160, 268, 292
NciI CCSGG 2 cut(s) 80, 221
NdeII GATC 4 cut(s) 216, 348, 357, 369
NlaIII CATG 1 cut(s) 310
NmuCI GTSAC 2 cut(s) 187, 391
PaeR7I CTCGAG 1 cut(s) 382
PauI GCGCGC 1 cut(s) 193
PcsI WCGNNNNNNNCGW 3 cut(s) 197, 324, 414
PdmI GAANNNNTTC 1 cut(s) 164
PkrI GCNGC 3 cut(s) 22, 212, 378
Ple19I CGATCG 2 cut(s) 360, 372
PleI GAGTC 4 cut(s) 15, 173, 317, 392
PmaCI CACGTG 1 cut(s) 231
PmlI CACGTG 1 cut(s) 231
PpsI GAGTC 4 cut(s) 15, 173, 317, 392
Ppu21I YACGTR 1 cut(s) 231
Psp124BI GAGCTC 1 cut(s) 288
PspCI CACGTG 1 cut(s) 231
PspEI GGTNACC 1 cut(s) 391
PspPI GGNCC 2 cut(s) 18, 28
PspXI VCTCGAGB 1 cut(s) 382
PsrI GAACNNNNNNTAC 2 cut(s) 257, 289
PteI GCGCGC 1 cut(s) 193
PvuI CGATCG 2 cut(s) 360, 372
RsaI GTAC 3 cut(s) 116, 275, 311
RsaNI GTAC 3 cut(s) 115, 274, 310
SacI GAGCTC 1 cut(s) 288
SatI GCNGC 3 cut(s) 21, 211, 377
Sau3AI GATC 4 cut(s) 216, 348, 357, 369
Sau96I GGNCC 2 cut(s) 18, 28
SchI GAGTC 4 cut(s) 16, 173, 317, 392
ScrFI CCNGG 2 cut(s) 80, 221
SduI GDGCHC 1 cut(s) 288
SetI ASST 7 cut(s) 128, 165, 233, 261, 288, 389, 408
SfiI GGCCNNNNNGGCC 1 cut(s) 26
Sfr274I CTCGAG 1 cut(s) 382
SgrAI CRCCGGYG 1 cut(s) 135
SlaI CTCGAG 1 cut(s) 382
SmlI CTYRAG 1 cut(s) 382
SmoI CTYRAG 1 cut(s) 382
SsiI CCGC 6 cut(s) 16, 21, 85, 183, 210, 251
SstI GAGCTC 1 cut(s) 288
StyD4I CCNGG 2 cut(s) 78, 219
TaaI ACNGT 2 cut(s) 241, 366
TaiI ACGT 3 cut(s) 128, 233, 261
TaqI TCGA 6 cut(s) 200, 282, 356, 368, 383, 411
TaqII GACCGA 1 cut(s) 379
TatI WGTACW 2 cut(s) 114, 309
TauI GCSGC 2 cut(s) 23, 213
TseFI GTSAC 2 cut(s) 187, 391
TseI GCWGC 1 cut(s) 376
Tsp45I GTSAC 2 cut(s) 187, 391
TspDTI ATGAA 1 cut(s) 304
TspGWI ACGGA 1 cut(s) 50
XhoI CTCGAG 1 cut(s) 382
XmnI GAANNNNTTC 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.