pycom01g19790

Protein of unknown function (DUF688)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0016559
Physical Location & Seq
Forward (+)
18356927 .. 18358077
1151 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g19790.2

Sequence Viewer

Length: 939 bp
ATGGCAAACTCTTACAAGAAGCAGGTAAGAGAGCCACCTTCAGTTCCTTTTCTATGGGAAGAAAGGCCGGGAATCGCCAAAAAAGACTGGAAACCGGAGTTTTCTTTGAGTTGTTCATTTCCGCCCCCTCCGGTCAAGTTTATAGCCTGTGTCCCGTTTGAATGGGAAGAAAAGCCAGGAACACCGCTACCATCTTTCTCAGAACCAACAACGGAATCAGTATCTCCTCTGCAGCCGCTGATGCTTCTCACTTACCCGTCACCTCCAACAAGCGCTGCCTCTCACCAACATTATCATGATGGTAAGCATGAAGATTACAATGGCGATGGAGAAGAAAGTATGCTTCAGTTGGAGTTTGAAACATTTGATTTTGAAACAGATGATACATTTCGCTCAGCTCCTTCTCTACTCGCAAACTGTCTTGTTCCATCCGTGGCACTTTCTACTGCTATTCCAGCACATGAAACCAGAGTCACCACACCAACAGAAGATAAGCGTGATTGGCCCAAGACGCCTTCCTCACTGGCATCAGATTCAGGCAGCAGTACTAGCAGCTATGCAACTGGAGCTTCAAGCCTGGTGGGGGCTTCGTTTTTGGAATGCCTCTTTCCACTGATTCCTGCCAATGCTGGATTTCTTGAAAAAACGGGGCAATCAGACAAAACCTCTCTTGCTCCAACAGAAGCAAAGAGTACATATTTTGATCGCGAAAGTAATGGCAGTGCTATTTTTAGGAGGCCGAGAACACTTGGAGAGCTGATAATGATGAGTCGACGGAGTAGTTGCAGGAGGAAAGCTGTTCAAATGAGAAAACACAATTTCTCAATGGAACTCATGAAGAATAAAGGTTTTGGATGCGGTATCTTTGGAACTGGAATCAAGGTGATAGAAGGGCTCTACAGCAAGAGGAAGAACTTGCCGACACTAAAACTGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF688

Protein Analysis

313

Amino Acids

34.53

Weight (kDa)

7.01

Isoelectric Point (pI)

64.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016559)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51680
fragaria_vesca FvH4_7g28270
prunus_persica Prupe.2G283000_v2.0.a1
pyrus_communis pycom01g19790
rosa_chinensis RchiOBHm_Chr1g0375221
rosa_laevigata RLG00000026678
rosa_multiflora Rmu_sc0000554.1_g000028
rosa_roxburghii Rroxscaffold_4G00282930
rosa_rugosa Rorug01G0389300
rosa_samantha Rh1AG400000 Rh1BG364600 Rh1CG377600 Rh1DG395200
rosa_wichuraiana Rw1G035510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 13
AccI GTMKAC 1 cut(s) 772
AccII CGCG 1 cut(s) 708
AciI CCGC 4 cut(s) 122, 185, 236, 858
AcuI CTGAAG 2 cut(s) 24, 329
AcyI GRCGYC 1 cut(s) 512
AfaI GTAC 2 cut(s) 547, 694
AfeI AGCGCT 1 cut(s) 274
AfiI CCNNNNNNNGG 1 cut(s) 583
AgsI TTSAA 6 cut(s) 161, 359, 374, 573, 641, 803
AjnI CCWGG 2 cut(s) 175, 576
AluBI AGCT 5 cut(s) 398, 555, 569, 757, 797
AluI AGCT 5 cut(s) 398, 555, 569, 757, 797
AlwNI CAGNNNCTG 1 cut(s) 238
Aor51HI AGCGCT 1 cut(s) 274
AoxI GGCC 3 cut(s) 65, 503, 737
ApeKI GCWGC 4 cut(s) 232, 275, 540, 552
AspLEI GCGC 1 cut(s) 275
AspS9I GGNCC 1 cut(s) 504
AsuC2I CCSGG 1 cut(s) 69
AsuHPI GGTGA 4 cut(s) 252, 275, 466, 895
BanII GRGCYC 1 cut(s) 897
BbvI GCAGC 4 cut(s) 244, 262, 552, 564
BccI CCATC 4 cut(s) 199, 293, 320, 436
BciT130I CCWGG 2 cut(s) 177, 578
BcnI CCSGG 1 cut(s) 69
BfaI CTAG 1 cut(s) 549
BfmI CTRYAG 2 cut(s) 230, 898
BfoI RGCGCY 1 cut(s) 276
BfuAI ACCTGC 1 cut(s) 13
BisI GCNGC 5 cut(s) 233, 236, 276, 541, 553
BlpI GCTNAGC 1 cut(s) 394
BlsI GCNGC 5 cut(s) 234, 237, 277, 542, 554
BmcAI AGTACT 1 cut(s) 547
Bme1390I CCNGG 3 cut(s) 69, 177, 578
BmgT120I GGNCC 1 cut(s) 504
BmrFI CCNGG 3 cut(s) 69, 177, 578
BmsI GCATC 3 cut(s) 231, 536, 845
BpmI CTGGAG 1 cut(s) 585
Bpu1102I GCTNAGC 1 cut(s) 394
BpuMI CCSGG 1 cut(s) 69
BsaHI GRCGYC 1 cut(s) 512
BsaJI CCNNGG 1 cut(s) 432
BsaWI WCCGGW 2 cut(s) 94, 130
Bsc4I CCNNNNNNNGG 1 cut(s) 583
Bse1I ACTGG 4 cut(s) 92, 528, 568, 877
BseBI CCWGG 2 cut(s) 177, 578
BseDI CCNNGG 1 cut(s) 432
BseGI GGATG 2 cut(s) 428, 860
BseLI CCNNNNNNNGG 1 cut(s) 583
BseMII CTCAG 2 cut(s) 213, 408
BseNI ACTGG 4 cut(s) 92, 528, 568, 877
BseRI GAGGAG 1 cut(s) 216
BseXI GCAGC 4 cut(s) 244, 262, 552, 564
Bsh1236I CGCG 1 cut(s) 708
BshFI GGCC 3 cut(s) 67, 505, 739
BsiSI CCGG 3 cut(s) 68, 95, 131
BslFI GGGAC 1 cut(s) 137
BslI CCNNNNNNNGG 1 cut(s) 583
BsmFI GGGAC 1 cut(s) 137
BsmI GAATGC 1 cut(s) 605
BsnI GGCC 3 cut(s) 67, 505, 739
Bsp1286I GDGCHC 1 cut(s) 897
Bsp143I GATC 1 cut(s) 703
Bsp1720I GCTNAGC 1 cut(s) 394
Bsp68I TCGCGA 1 cut(s) 708
BspACI CCGC 4 cut(s) 122, 185, 236, 858
BspANI GGCC 3 cut(s) 67, 505, 739
BspCNI CTCAG 2 cut(s) 212, 407
BspFNI CGCG 1 cut(s) 708
BspHI TCATGA 2 cut(s) 295, 834
BspMAI CTGCAG 1 cut(s) 234
BspMI ACCTGC 1 cut(s) 13
BsrI ACTGG 4 cut(s) 92, 528, 568, 877
BssECI CCNNGG 1 cut(s) 432
BssMI GATC 1 cut(s) 703
BssNI GRCGYC 1 cut(s) 512
Bst2UI CCWGG 2 cut(s) 177, 578
Bst4CI ACNGT 1 cut(s) 419
BstACI GRCGYC 1 cut(s) 512
BstDEI CTNAG 2 cut(s) 199, 394
BstDSI CCRYGG 1 cut(s) 432
BstF5I GGATG 2 cut(s) 428, 860
BstFNI CGCG 1 cut(s) 708
BstH2I RGCGCY 1 cut(s) 276
BstHHI GCGC 1 cut(s) 275
BstKTI GATC 1 cut(s) 706
BstMBI GATC 1 cut(s) 703
BstMWI GCNNNNNNNGC 6 cut(s) 241, 455, 502, 511, 549, 566
BstNI CCWGG 2 cut(s) 177, 578
BstSCI CCNGG 3 cut(s) 67, 175, 576
BstSFI CTRYAG 2 cut(s) 230, 898
BstUI CGCG 1 cut(s) 708
BstV1I GCAGC 4 cut(s) 244, 262, 552, 564
BsuRI GGCC 3 cut(s) 67, 505, 739
BtgI CCRYGG 1 cut(s) 432
BtgZI GCGATG 1 cut(s) 339
BtsCI GGATG 2 cut(s) 428, 860
BtsI GCAGTG 1 cut(s) 727
BtsIMutI CAGTG 3 cut(s) 521, 611, 727
BtuMI TCGCGA 1 cut(s) 708
BveI ACCTGC 1 cut(s) 13
CaiI CAGNNNCTG 1 cut(s) 238
CciI TCATGA 2 cut(s) 295, 834
CfoI GCGC 1 cut(s) 275
Cfr13I GGNCC 1 cut(s) 504
CseI GACGC 1 cut(s) 520
Csp6I GTAC 2 cut(s) 546, 693
CspCI CAANNNNNGTGG 2 cut(s) 561, 596
CviAII CATG 4 cut(s) 296, 308, 461, 835
CviQI GTAC 2 cut(s) 546, 693
DdeI CTNAG 2 cut(s) 199, 394
DpnI GATC 1 cut(s) 705
DpnII GATC 1 cut(s) 703
EciI GGCGGA 1 cut(s) 111
Eco24I GRGCYC 1 cut(s) 897
Eco47III AGCGCT 1 cut(s) 274
Eco57I CTGAAG 2 cut(s) 24, 329
EcoRII CCWGG 2 cut(s) 175, 576
EcoT38I GRGCYC 1 cut(s) 897
FaeI CATG 4 cut(s) 299, 311, 464, 838
FaiI YATR 9 cut(s) 55, 143, 297, 309, 341, 462, 558, 697, 836
FaqI GGGAC 1 cut(s) 137
FatI CATG 4 cut(s) 295, 307, 460, 834
FblI GTMKAC 1 cut(s) 772
Fnu4HI GCNGC 5 cut(s) 233, 236, 276, 541, 553
FokI GGATG 2 cut(s) 415, 867
FriOI GRGCYC 1 cut(s) 897
Fsp4HI GCNGC 5 cut(s) 233, 236, 276, 541, 553
FspBI CTAG 1 cut(s) 549
GlaI GCGC 1 cut(s) 274
GluI GCNGC 5 cut(s) 233, 236, 276, 541, 553
GsuI CTGGAG 1 cut(s) 585
HaeII RGCGCY 1 cut(s) 276
HaeIII GGCC 3 cut(s) 67, 505, 739
HapII CCGG 3 cut(s) 68, 95, 131
HgaI GACGC 1 cut(s) 520
HhaI GCGC 1 cut(s) 275
Hin1I GRCGYC 1 cut(s) 512
Hin1II CATG 4 cut(s) 299, 311, 464, 838
Hin6I GCGC 1 cut(s) 273
HinP1I GCGC 1 cut(s) 273
HincII GTYRAC 1 cut(s) 773
HindII GTYRAC 1 cut(s) 773
HinfI GANTC 7 cut(s) 72, 215, 471, 533, 616, 769, 876
HpaII CCGG 3 cut(s) 68, 95, 131
HphI GGTGA 4 cut(s) 252, 275, 466, 895
Hpy166II GTNNAC 1 cut(s) 773
Hpy188I TCNGA 3 cut(s) 202, 532, 658
Hpy188III TCNNGA 4 cut(s) 296, 638, 707, 835
Hpy8I GTNNAC 1 cut(s) 773
Hpy99I CGWCG 1 cut(s) 777
HpyAV CCTTC 4 cut(s) 48, 411, 525, 884
HpyCH4III ACNGT 1 cut(s) 419
HpyCH4V TGCA 3 cut(s) 232, 560, 786
HpyF10VI GCNNNNNNNGC 6 cut(s) 241, 455, 502, 511, 549, 566
HpyF3I CTNAG 2 cut(s) 199, 394
Hsp92I GRCGYC 1 cut(s) 512
Hsp92II CATG 4 cut(s) 299, 311, 464, 838
HspAI GCGC 1 cut(s) 273
Kzo9I GATC 1 cut(s) 703
LmnI GCTCC 3 cut(s) 403, 566, 679
Lsp1109I GCAGC 4 cut(s) 244, 262, 552, 564
LweI GCATC 3 cut(s) 231, 536, 845
MaeI CTAG 1 cut(s) 549
MaeIII GTNAC 2 cut(s) 258, 472
MalI GATC 1 cut(s) 705
MboI GATC 1 cut(s) 703
MboII GAAGA 7 cut(s) 71, 179, 323, 344, 500, 850, 922
MhlI GDGCHC 1 cut(s) 897
MluCI AATT 1 cut(s) 817
MlyI GAGTC 2 cut(s) 480, 778
MmeI TCCRAC 3 cut(s) 290, 330, 701
MslI CAYNNNNRTG 1 cut(s) 294
MspA1I CMGCKG 1 cut(s) 238
MspI CCGG 3 cut(s) 68, 95, 131
MspR9I CCNGG 3 cut(s) 69, 177, 578
Mva1269I GAATGC 1 cut(s) 605
MvaI CCWGG 2 cut(s) 177, 578
MvnI CGCG 1 cut(s) 708
MwoI GCNNNNNNNGC 6 cut(s) 241, 455, 502, 511, 549, 566
NciI CCSGG 1 cut(s) 69
NdeII GATC 1 cut(s) 703
NlaIII CATG 4 cut(s) 299, 311, 464, 838
NmeAIII GCCGAG 1 cut(s) 765
NmuCI GTSAC 2 cut(s) 258, 472
NruI TCGCGA 1 cut(s) 708
PagI TCATGA 2 cut(s) 295, 834
PctI GAATGC 1 cut(s) 605
PfeI GAWTC 5 cut(s) 72, 215, 533, 616, 876
PkrI GCNGC 5 cut(s) 234, 237, 277, 542, 554
PleI GAGTC 2 cut(s) 479, 777
PpsI GAGTC 2 cut(s) 479, 777
Psp6I CCWGG 2 cut(s) 175, 576
PspGI CCWGG 2 cut(s) 175, 576
PspPI GGNCC 1 cut(s) 504
PstI CTGCAG 1 cut(s) 234
PstNI CAGNNNCTG 1 cut(s) 238
RruI TCGCGA 1 cut(s) 708
RsaI GTAC 2 cut(s) 547, 694
RsaNI GTAC 2 cut(s) 546, 693
RseI CAYNNNNRTG 1 cut(s) 294
SalI GTCGAC 1 cut(s) 771
SatI GCNGC 5 cut(s) 233, 236, 276, 541, 553
Sau3AI GATC 1 cut(s) 703
Sau96I GGNCC 1 cut(s) 504
ScaI AGTACT 1 cut(s) 547
SchI GAGTC 2 cut(s) 480, 778
ScrFI CCNGG 3 cut(s) 69, 177, 578
SduI GDGCHC 1 cut(s) 897
SfaNI GCATC 3 cut(s) 231, 536, 845
SfcI CTRYAG 2 cut(s) 230, 898
SmiMI CAYNNNNRTG 1 cut(s) 294
Sse9I AATT 1 cut(s) 817
SsiI CCGC 4 cut(s) 122, 185, 236, 858
SspMI CTAG 1 cut(s) 549
StyD4I CCNGG 3 cut(s) 67, 175, 576
TaaI ACNGT 1 cut(s) 419
TaqI TCGA 1 cut(s) 772
TasI AATT 1 cut(s) 817
TatI WGTACW 2 cut(s) 545, 692
TauI GCSGC 1 cut(s) 238
TfiI GAWTC 5 cut(s) 72, 215, 533, 616, 876
TscAI CASTG 3 cut(s) 528, 618, 727
TseFI GTSAC 2 cut(s) 258, 472
TseI GCWGC 4 cut(s) 232, 275, 540, 552
Tsp45I GTSAC 2 cut(s) 258, 472
TspDTI ATGAA 4 cut(s) 105, 324, 477, 851
TspGWI ACGGA 3 cut(s) 227, 421, 790
TspRI CASTG 3 cut(s) 528, 618, 727
XmiI GTMKAC 1 cut(s) 772
XspI CTAG 1 cut(s) 549
ZrmI AGTACT 1 cut(s) 547
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.