Rroxscaffold_4G00282930

Protein of unknown function (DUF688)

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
5018311 .. 5019514
1204 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00282930.1

Sequence Viewer

Length: 1038 bp
ATGGCAACCTTCAACAAGAAGCAGGTAAGGGTACCACCTTCAGTACCATTTATTTGGGAAGAAAGGCCAGGAATACCAAAAAAAGACTGGAAACCAACGGTTTCTTCAAACAGTGCAGTTCCAACCCCTCCAGTCAAGCTTATTGCATCGGTCCCCTTCATATGGGAAGAAAAGCCAGGAACCCCACTACCGTATTTCGCGGAATCGTCATCAGAATCAGCAATGCTTAAACCCATGATGCTCATCACTTACCCATCACCTCCAATATGCTCCCAGCACAATGATCATGGCGCAGAAGATTACAGTGATGGCAGTAATGGAAATGATGATGGAGAAGATGATATACAAAGTGTGTTCAAACTGGACATGGAAGCATTTGATTTTGAAACAGATGATTCATTTAGCTCGGCTCCTTCTCTCCTAGCAAACTGTCTTGTTTCATCATTGGCAATTTCCACTGCTGTTCCAGCGCCAGAAGATAAGAGTGATCAGACAGAGACAGACACACCTTCCTCACCATTGTCAGAAGCAGGCGGCAGTACAAGCAGTTATGCAACTGGAGCTTCGAGCCTGGTGGGTGGTGCTTTTTTGGAATGCCTTTTCCACTGCTTCCTGCCAAGGATAAGAGTGATCAGACAGAGACAGACACACCTTCCTCACCATTGTCAGAAGCAGGCAGCAGGACAATCAGTTATGCAACTGGAGCTCCGAGCCTGGTGGGTGCTTCCTGCCAAAGCTGGATTTCTTGAAAAGGTTGGCCAATCAGACAACCACACAACTCCACAAGGTTCAAGGACTAAACACTTTGATCGTGAATTTAATGGTAGCGTCATTCTGAGGCCAAGAACACTCGGAGAGCTGATACTGATGAGCCGAAAGAGTAGCTACAGGAGGAAAGCTGTTCAAATGAGGAAACAGAATCTATCAAAGGAACTCATGATGAAGAATGCTTACGGATGCTGCATCTTTGGAACTGGCAGCAAGATGATAGAAGGATTACATAGCAAGAGGAAGAACCTACTTAGACTTCTGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

345

Amino Acids

38.15

Weight (kDa)

8.11

Isoelectric Point (pI)

53.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016559)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51680
fragaria_vesca FvH4_7g28270
prunus_persica Prupe.2G283000_v2.0.a1
pyrus_communis pycom01g19790
rosa_chinensis RchiOBHm_Chr1g0375221
rosa_laevigata RLG00000026678
rosa_multiflora Rmu_sc0000554.1_g000028
rosa_roxburghii Rroxscaffold_4G00282930
rosa_rugosa Rorug01G0389300
rosa_samantha Rh1AG400000 Rh1BG364600 Rh1CG377600 Rh1DG395200
rosa_wichuraiana Rw1G035510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 13
Acc65I GGTACC 1 cut(s) 31
AccB1I GGYRCC 1 cut(s) 31
AccII CGCG 1 cut(s) 200
AciI CCGC 2 cut(s) 200, 534
AcoI YGGCCR 1 cut(s) 757
AcsI RAATTY 1 cut(s) 815
AcuI CTGAAG 1 cut(s) 24
AfaI GTAC 3 cut(s) 33, 45, 541
AfiI CCNNNNNNNGG 1 cut(s) 162
AgsI TTSAA 7 cut(s) 13, 108, 358, 386, 749, 792, 905
AjnI CCWGG 4 cut(s) 67, 175, 570, 713
AjuI GAANNNNNNNTTGG 2 cut(s) 88, 120
AluBI AGCT 8 cut(s) 139, 405, 563, 706, 737, 859, 885, 899
AluI AGCT 8 cut(s) 139, 405, 563, 706, 737, 859, 885, 899
Alw21I GWGCWC 1 cut(s) 708
Alw26I GTCTC 2 cut(s) 491, 634
AoxI GGCC 3 cut(s) 65, 757, 839
ApeKI GCWGC 3 cut(s) 677, 960, 978
ApoI RAATTY 1 cut(s) 815
Asp718I GGTACC 1 cut(s) 31
AspLEI GCGC 2 cut(s) 293, 472
AspS9I GGNCC 1 cut(s) 151
AsuHPI GGTGA 3 cut(s) 249, 507, 650
AvaII GGWCC 1 cut(s) 151
BalI TGGCCA 1 cut(s) 759
BanI GGYRCC 1 cut(s) 31
BanII GRGCYC 1 cut(s) 708
BarI GAAGNNNNNNTAC 4 cut(s) 327, 359, 935, 967
Bbv12I GWGCWC 1 cut(s) 708
BbvI GCAGC 3 cut(s) 689, 947, 990
BccI CCATC 3 cut(s) 262, 302, 323
BciT130I CCWGG 4 cut(s) 69, 177, 572, 715
BclI TGATCA 3 cut(s) 283, 487, 630
BcoDI GTCTC 2 cut(s) 491, 634
BfaI CTAG 1 cut(s) 422
BfmI CTRYAG 1 cut(s) 886
BfoI RGCGCY 1 cut(s) 473
BfuAI ACCTGC 1 cut(s) 13
BisI GCNGC 4 cut(s) 535, 678, 961, 979
BlsI GCNGC 4 cut(s) 536, 679, 962, 980
Bme1390I CCNGG 4 cut(s) 69, 177, 572, 715
Bme18I GGWCC 1 cut(s) 151
BmgT120I GGNCC 1 cut(s) 151
BmiI GGNNCC 4 cut(s) 33, 153, 181, 411
BmrFI CCNGG 4 cut(s) 69, 177, 572, 715
BmsI GCATC 4 cut(s) 155, 228, 947, 972
BpmI CTGGAG 3 cut(s) 114, 579, 722
BsaBI GATNNNNATC 1 cut(s) 242
BsaJI CCNNGG 1 cut(s) 617
BsaXI ACNNNNNCTCC 2 cut(s) 690, 720
Bsc4I CCNNNNNNNGG 1 cut(s) 162
Bse1I ACTGG 6 cut(s) 92, 131, 366, 562, 705, 979
Bse3DI GCAATG 1 cut(s) 228
Bse8I GATNNNNATC 1 cut(s) 242
BseBI CCWGG 4 cut(s) 69, 177, 572, 715
BseDI CCNNGG 1 cut(s) 617
BseGI GGATG 1 cut(s) 962
BseJI GATNNNNATC 1 cut(s) 242
BseLI CCNNNNNNNGG 1 cut(s) 162
BseMI GCAATG 1 cut(s) 228
BseMII CTCAG 1 cut(s) 827
BseNI ACTGG 6 cut(s) 92, 131, 366, 562, 705, 979
BseXI GCAGC 3 cut(s) 689, 947, 990
BseYI CCCAGC 1 cut(s) 273
BsgI GTGCAG 1 cut(s) 135
Bsh1236I CGCG 1 cut(s) 200
BshFI GGCC 3 cut(s) 67, 759, 841
BshNI GGYRCC 1 cut(s) 31
BsiHKAI GWGCWC 1 cut(s) 708
BslFI GGGAC 1 cut(s) 137
BslI CCNNNNNNNGG 1 cut(s) 162
BsmAI GTCTC 2 cut(s) 491, 634
BsmFI GGGAC 1 cut(s) 137
BsmI GAATGC 2 cut(s) 599, 952
BsnI GGCC 3 cut(s) 67, 759, 841
Bsp1286I GDGCHC 1 cut(s) 708
Bsp143I GATC 4 cut(s) 283, 487, 630, 808
BspACI CCGC 2 cut(s) 200, 534
BspANI GGCC 3 cut(s) 67, 759, 841
BspCNI CTCAG 1 cut(s) 828
BspFNI CGCG 1 cut(s) 200
BspHI TCATGA 1 cut(s) 936
BspLI GGNNCC 4 cut(s) 33, 153, 181, 411
BspMI ACCTGC 1 cut(s) 13
BspT107I GGYRCC 1 cut(s) 31
BsrDI GCAATG 1 cut(s) 228
BsrI ACTGG 6 cut(s) 92, 131, 366, 562, 705, 979
BssECI CCNNGG 1 cut(s) 617
BssMI GATC 4 cut(s) 283, 487, 630, 808
BssT1I CCWWGG 1 cut(s) 617
Bst2UI CCWGG 4 cut(s) 69, 177, 572, 715
Bst4CI ACNGT 5 cut(s) 100, 113, 192, 305, 431
BstC8I GCNNGC 2 cut(s) 532, 675
BstDEI CTNAG 2 cut(s) 836, 1022
BstF5I GGATG 1 cut(s) 962
BstFNI CGCG 1 cut(s) 200
BstH2I RGCGCY 1 cut(s) 473
BstHHI GCGC 2 cut(s) 293, 472
BstKTI GATC 4 cut(s) 286, 490, 633, 811
BstMAI GTCTC 2 cut(s) 491, 634
BstMBI GATC 4 cut(s) 283, 487, 630, 808
BstMWI GCNNNNNNNGC 4 cut(s) 467, 543, 560, 703
BstNI CCWGG 4 cut(s) 69, 177, 572, 715
BstSCI CCNGG 4 cut(s) 67, 175, 570, 713
BstSFI CTRYAG 1 cut(s) 886
BstUI CGCG 1 cut(s) 200
BstV1I GCAGC 3 cut(s) 689, 947, 990
BstXI CCANNNNNNTGG 1 cut(s) 54
BsuRI GGCC 3 cut(s) 67, 759, 841
BtsCI GGATG 1 cut(s) 962
BtsI GCAGTG 2 cut(s) 456, 604
BtsIMutI CAGTG 4 cut(s) 118, 310, 456, 604
BveI ACCTGC 1 cut(s) 13
Cac8I GCNNGC 2 cut(s) 532, 675
CciI TCATGA 1 cut(s) 936
CfoI GCGC 2 cut(s) 293, 472
Cfr13I GGNCC 1 cut(s) 151
CseI GACGC 1 cut(s) 817
Csp6I GTAC 3 cut(s) 32, 44, 540
CviAII CATG 4 cut(s) 235, 287, 367, 937
CviQI GTAC 3 cut(s) 32, 44, 540
DdeI CTNAG 2 cut(s) 836, 1022
DpnI GATC 4 cut(s) 285, 489, 632, 810
DpnII GATC 4 cut(s) 283, 487, 630, 808
EaeI YGGCCR 1 cut(s) 757
Ecl136II GAGCTC 1 cut(s) 706
Eco130I CCWWGG 1 cut(s) 617
Eco24I GRGCYC 1 cut(s) 708
Eco47I GGWCC 1 cut(s) 151
Eco53kI GAGCTC 1 cut(s) 706
Eco57I CTGAAG 1 cut(s) 24
EcoICRI GAGCTC 1 cut(s) 706
EcoRII CCWGG 4 cut(s) 67, 175, 570, 713
EcoT14I CCWWGG 1 cut(s) 617
EcoT38I GRGCYC 1 cut(s) 708
ErhI CCWWGG 1 cut(s) 617
FaeI CATG 4 cut(s) 238, 290, 370, 940
FaqI GGGAC 1 cut(s) 137
FatI CATG 4 cut(s) 234, 286, 366, 936
FauNDI CATATG 1 cut(s) 161
FbaI TGATCA 3 cut(s) 283, 487, 630
Fnu4HI GCNGC 4 cut(s) 535, 678, 961, 979
FokI GGATG 1 cut(s) 969
FriOI GRGCYC 1 cut(s) 708
Fsp4HI GCNGC 4 cut(s) 535, 678, 961, 979
FspBI CTAG 1 cut(s) 422
GlaI GCGC 2 cut(s) 292, 471
GluI GCNGC 4 cut(s) 535, 678, 961, 979
GsaI CCCAGC 1 cut(s) 277
GsuI CTGGAG 3 cut(s) 114, 579, 722
HaeII RGCGCY 1 cut(s) 473
HaeIII GGCC 3 cut(s) 67, 759, 841
HgaI GACGC 1 cut(s) 817
HhaI GCGC 2 cut(s) 293, 472
Hin1II CATG 4 cut(s) 238, 290, 370, 940
Hin6I GCGC 2 cut(s) 291, 470
HinP1I GCGC 2 cut(s) 291, 470
HindIII AAGCTT 1 cut(s) 137
HinfI GANTC 4 cut(s) 203, 215, 395, 919
HphI GGTGA 3 cut(s) 249, 507, 650
Hpy188III TCNNGA 3 cut(s) 746, 812, 937
HpyAV CCTTC 7 cut(s) 19, 48, 166, 423, 519, 662, 986
HpyCH4III ACNGT 5 cut(s) 100, 113, 192, 305, 431
HpyCH4V TGCA 5 cut(s) 116, 146, 554, 697, 963
HpyF10VI GCNNNNNNNGC 4 cut(s) 467, 543, 560, 703
HpyF3I CTNAG 2 cut(s) 836, 1022
Hsp92II CATG 4 cut(s) 238, 290, 370, 940
HspAI GCGC 2 cut(s) 291, 470
KpnI GGTACC 1 cut(s) 35
Ksp22I TGATCA 3 cut(s) 283, 487, 630
Kzo9I GATC 4 cut(s) 283, 487, 630, 808
LmnI GCTCC 5 cut(s) 275, 415, 560, 703, 711
Lsp1109I GCAGC 3 cut(s) 689, 947, 990
LweI GCATC 4 cut(s) 155, 228, 947, 972
MaeI CTAG 1 cut(s) 422
MalI GATC 4 cut(s) 285, 489, 632, 810
MboI GATC 4 cut(s) 283, 487, 630, 808
MboII GAAGA 8 cut(s) 71, 96, 179, 308, 347, 488, 955, 1024
MhlI GDGCHC 1 cut(s) 708
MlsI TGGCCA 1 cut(s) 759
MluCI AATT 2 cut(s) 450, 815
MluNI TGGCCA 1 cut(s) 759
MmeI TCCRAC 1 cut(s) 146
MnlI CCTC 8 cut(s) 138, 270, 523, 666, 831, 885, 903, 1002
Mox20I TGGCCA 1 cut(s) 759
MscI TGGCCA 1 cut(s) 759
MseI TTAA 2 cut(s) 228, 819
Msp20I TGGCCA 1 cut(s) 759
MspR9I CCNGG 4 cut(s) 69, 177, 572, 715
Mva1269I GAATGC 2 cut(s) 599, 952
MvaI CCWGG 4 cut(s) 69, 177, 572, 715
MvnI CGCG 1 cut(s) 200
MwoI GCNNNNNNNGC 4 cut(s) 467, 543, 560, 703
NdeI CATATG 1 cut(s) 161
NdeII GATC 4 cut(s) 283, 487, 630, 808
NlaIII CATG 4 cut(s) 238, 290, 370, 940
NlaIV GGNNCC 4 cut(s) 33, 153, 181, 411
NmeAIII GCCGAG 1 cut(s) 386
PagI TCATGA 1 cut(s) 936
PctI GAATGC 2 cut(s) 599, 952
PfeI GAWTC 4 cut(s) 203, 215, 395, 919
PkrI GCNGC 4 cut(s) 536, 679, 962, 980
Psp124BI GAGCTC 1 cut(s) 708
Psp6I CCWGG 4 cut(s) 67, 175, 570, 713
PspFI CCCAGC 1 cut(s) 273
PspGI CCWGG 4 cut(s) 67, 175, 570, 713
PspN4I GGNNCC 4 cut(s) 33, 153, 181, 411
PspPI GGNCC 1 cut(s) 151
RsaI GTAC 3 cut(s) 33, 45, 541
RsaNI GTAC 3 cut(s) 32, 44, 540
SacI GAGCTC 1 cut(s) 708
SaqAI TTAA 2 cut(s) 228, 819
SatI GCNGC 4 cut(s) 535, 678, 961, 979
Sau3AI GATC 4 cut(s) 283, 487, 630, 808
Sau96I GGNCC 1 cut(s) 151
ScrFI CCNGG 4 cut(s) 69, 177, 572, 715
SduI GDGCHC 1 cut(s) 708
SfaNI GCATC 4 cut(s) 155, 228, 947, 972
SfcI CTRYAG 1 cut(s) 886
SinI GGWCC 1 cut(s) 151
Sse9I AATT 2 cut(s) 450, 815
SsiI CCGC 2 cut(s) 200, 534
SspMI CTAG 1 cut(s) 422
SstI GAGCTC 1 cut(s) 708
StyD4I CCNGG 4 cut(s) 67, 175, 570, 713
StyI CCWWGG 1 cut(s) 617
TaaI ACNGT 5 cut(s) 100, 113, 192, 305, 431
TaqI TCGA 1 cut(s) 566
TaqII GACCGA 1 cut(s) 139
TasI AATT 2 cut(s) 450, 815
TatI WGTACW 1 cut(s) 539
TauI GCSGC 1 cut(s) 537
TfiI GAWTC 4 cut(s) 203, 215, 395, 919
Tru1I TTAA 2 cut(s) 228, 819
Tru9I TTAA 2 cut(s) 228, 819
TscAI CASTG 4 cut(s) 118, 310, 463, 611
TseI GCWGC 3 cut(s) 677, 960, 978
TspDTI ATGAA 4 cut(s) 148, 387, 429, 956
TspGWI ACGGA 1 cut(s) 969
TspRI CASTG 4 cut(s) 118, 310, 463, 611
VpaK11BI GGWCC 1 cut(s) 151
XapI RAATTY 1 cut(s) 815
XcmI CCANNNNNNNNNTGG 1 cut(s) 84
XspI CTAG 1 cut(s) 422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.