RLG00000026678

Protein of unknown function (DUF688)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0016559
Physical Location & Seq
Reverse (-)
4821273 .. 4822334
1062 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026678

Sequence Viewer

Length: 924 bp
ATGGCAACCTTGAACAAGAAGCAGGTAAGGGAACCACCTTCAGTACCATTTATTTGGGAAGAAAGGCCAGGAATACCAAAAAAAGACTGGAAACCAACGGTTTCTTCAAACAGTGTAGCTCCAACCCCTCCAGTCAAGCTTATTGCCTCGGTCCCATTCACATGGGAAGAAAAGCCAGGAACCCCACTACCGTATTTCTCGGAATCGTCATCAGAATCAGCAATGCCTAAACCCATGATACTCATCACTTATCCATCACCTCCAATATGCTCCCAGCACAATGATCATGGCGCAGAAGATTACAATGATGGCAGTAATGGAAATGATGATGGAGAAGATGATATACAAAGTGTGTTCAAACTGGACATGGAAGCATTTGATTTTGAAACAGATGATTCATTTAGCTCGGCTCCTTCTCTCCTAGCAAACTGTCTTGTTTCATCATTGGCAATTTCCACTGCTGTTCCAGCGCCAGAAGATAAGAGTGATCAGACAGAGACAGACACACCTTCCTCACCATTGTCAGAAGCAGGCAGCAGTACAAGCAGTTATGCAACTGGAGCTTCGAGCCTGGTGGGTGGTGCTTTTTTGGAATGCCTTTTTCCACTGCTTCCTGCCAAAGCTGGATTTCTTGAAAAGGTTGGCCAATCAGATAACCACACAACTCCACAAGGATCAAAGACTAAATACTTTGATCGTGAATTTAATGGTAGCGTCATTCTGAGGCCAAGAACACTCGGAGAGCTGATACTGATGAGCCGAAAGAGTAGTTACAGGAGGAAAGCTGTTCAAATGAGGAAACAGAATCTATCAAAGGAACTCATGATGAAGAATGCTTACGGATGCTGCATCTTTGGAACTGGCAGCAAAATGATAGAAGGATTACATAGCAAGAGGAAGAACTTGCTTAGACTTCTGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF688

Protein Analysis

308

Amino Acids

33.54

Weight (kDa)

5.7

Isoelectric Point (pI)

56.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF688 PF05097 4 - 40 4.2e-07 Protein of unknown function (DUF688)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016559)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51680
fragaria_vesca FvH4_7g28270
prunus_persica Prupe.2G283000_v2.0.a1
pyrus_communis pycom01g19790
rosa_chinensis RchiOBHm_Chr1g0375221
rosa_laevigata RLG00000026678
rosa_multiflora Rmu_sc0000554.1_g000028
rosa_roxburghii Rroxscaffold_4G00282930
rosa_rugosa Rorug01G0389300
rosa_samantha Rh1AG400000 Rh1BG364600 Rh1CG377600 Rh1DG395200
rosa_wichuraiana Rw1G035510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 13
AclWI GGATC 1 cut(s) 682
AcoI YGGCCR 1 cut(s) 643
AcsI RAATTY 1 cut(s) 701
AcuI CTGAAG 1 cut(s) 24
AfaI GTAC 2 cut(s) 45, 541
AgsI TTSAA 6 cut(s) 13, 108, 358, 386, 635, 791
AjnI CCWGG 3 cut(s) 67, 175, 570
AjuI GAANNNNNNNTTGG 2 cut(s) 88, 120
AluBI AGCT 7 cut(s) 119, 139, 405, 563, 623, 745, 785
AluI AGCT 7 cut(s) 119, 139, 405, 563, 623, 745, 785
Alw26I GTCTC 1 cut(s) 491
AlwI GGATC 1 cut(s) 682
AoxI GGCC 3 cut(s) 65, 643, 725
ApeKI GCWGC 3 cut(s) 534, 846, 864
ApoI RAATTY 1 cut(s) 701
AspLEI GCGC 2 cut(s) 293, 472
AspS9I GGNCC 1 cut(s) 151
AsuHPI GGTGA 2 cut(s) 249, 507
AvaII GGWCC 1 cut(s) 151
BalI TGGCCA 1 cut(s) 645
BarI GAAGNNNNNNTAC 4 cut(s) 327, 359, 821, 853
BbvI GCAGC 3 cut(s) 546, 833, 876
BccI CCATC 3 cut(s) 262, 302, 323
BciT130I CCWGG 3 cut(s) 69, 177, 572
BclI TGATCA 2 cut(s) 283, 487
BcoDI GTCTC 1 cut(s) 491
BfaI CTAG 1 cut(s) 422
BfoI RGCGCY 1 cut(s) 473
BfuAI ACCTGC 1 cut(s) 13
BisI GCNGC 3 cut(s) 535, 847, 865
BlsI GCNGC 3 cut(s) 536, 848, 866
Bme1390I CCNGG 3 cut(s) 69, 177, 572
Bme18I GGWCC 1 cut(s) 151
BmgT120I GGNCC 1 cut(s) 151
BmiI GGNNCC 4 cut(s) 33, 153, 181, 411
BmrFI CCNGG 3 cut(s) 69, 177, 572
BmsI GCATC 2 cut(s) 833, 858
BpmI CTGGAG 2 cut(s) 114, 579
BsaBI GATNNNNATC 1 cut(s) 242
BsaJI CCNNGG 1 cut(s) 147
Bse1I ACTGG 5 cut(s) 92, 131, 366, 562, 865
Bse3DI GCAATG 1 cut(s) 228
Bse8I GATNNNNATC 1 cut(s) 242
BseBI CCWGG 3 cut(s) 69, 177, 572
BseDI CCNNGG 1 cut(s) 147
BseGI GGATG 1 cut(s) 848
BseJI GATNNNNATC 1 cut(s) 242
BseMI GCAATG 1 cut(s) 228
BseMII CTCAG 1 cut(s) 713
BseNI ACTGG 5 cut(s) 92, 131, 366, 562, 865
BseXI GCAGC 3 cut(s) 546, 833, 876
BseYI CCCAGC 1 cut(s) 273
BshFI GGCC 3 cut(s) 67, 645, 727
BslFI GGGAC 1 cut(s) 137
BsmAI GTCTC 1 cut(s) 491
BsmFI GGGAC 1 cut(s) 137
BsmI GAATGC 2 cut(s) 599, 838
BsnI GGCC 3 cut(s) 67, 645, 727
Bsp143I GATC 4 cut(s) 283, 487, 674, 694
BspANI GGCC 3 cut(s) 67, 645, 727
BspCNI CTCAG 1 cut(s) 714
BspHI TCATGA 1 cut(s) 822
BspLI GGNNCC 4 cut(s) 33, 153, 181, 411
BspMI ACCTGC 1 cut(s) 13
BspPI GGATC 1 cut(s) 682
BsrDI GCAATG 1 cut(s) 228
BsrI ACTGG 5 cut(s) 92, 131, 366, 562, 865
BssECI CCNNGG 1 cut(s) 147
BssMI GATC 4 cut(s) 283, 487, 674, 694
Bst2UI CCWGG 3 cut(s) 69, 177, 572
Bst4CI ACNGT 4 cut(s) 100, 113, 192, 431
BstC8I GCNNGC 1 cut(s) 532
BstDEI CTNAG 2 cut(s) 722, 908
BstF5I GGATG 1 cut(s) 848
BstH2I RGCGCY 1 cut(s) 473
BstHHI GCGC 2 cut(s) 293, 472
BstKTI GATC 4 cut(s) 286, 490, 677, 697
BstMAI GTCTC 1 cut(s) 491
BstMBI GATC 4 cut(s) 283, 487, 674, 694
BstMWI GCNNNNNNNGC 3 cut(s) 467, 543, 560
BstNI CCWGG 3 cut(s) 69, 177, 572
BstSCI CCNGG 3 cut(s) 67, 175, 570
BstV1I GCAGC 3 cut(s) 546, 833, 876
BstXI CCANNNNNNTGG 2 cut(s) 54, 162
BsuRI GGCC 3 cut(s) 67, 645, 727
BtsCI GGATG 1 cut(s) 848
BtsI GCAGTG 2 cut(s) 456, 605
BtsIMutI CAGTG 3 cut(s) 118, 456, 605
BveI ACCTGC 1 cut(s) 13
Cac8I GCNNGC 1 cut(s) 532
CciI TCATGA 1 cut(s) 822
CfoI GCGC 2 cut(s) 293, 472
Cfr13I GGNCC 1 cut(s) 151
CseI GACGC 1 cut(s) 703
Csp6I GTAC 2 cut(s) 44, 540
CviAII CATG 5 cut(s) 162, 235, 287, 367, 823
CviQI GTAC 2 cut(s) 44, 540
DdeI CTNAG 2 cut(s) 722, 908
DpnI GATC 4 cut(s) 285, 489, 676, 696
DpnII GATC 4 cut(s) 283, 487, 674, 694
EaeI YGGCCR 1 cut(s) 643
Eco47I GGWCC 1 cut(s) 151
Eco57I CTGAAG 1 cut(s) 24
EcoRII CCWGG 3 cut(s) 67, 175, 570
FaeI CATG 5 cut(s) 165, 238, 290, 370, 826
FaiI YATR 9 cut(s) 163, 236, 268, 288, 344, 368, 552, 824, 888
FaqI GGGAC 1 cut(s) 137
FatI CATG 5 cut(s) 161, 234, 286, 366, 822
FbaI TGATCA 2 cut(s) 283, 487
Fnu4HI GCNGC 3 cut(s) 535, 847, 865
FokI GGATG 1 cut(s) 855
Fsp4HI GCNGC 3 cut(s) 535, 847, 865
FspBI CTAG 1 cut(s) 422
GlaI GCGC 2 cut(s) 292, 471
GluI GCNGC 3 cut(s) 535, 847, 865
GsaI CCCAGC 1 cut(s) 277
GsuI CTGGAG 2 cut(s) 114, 579
HaeII RGCGCY 1 cut(s) 473
HaeIII GGCC 3 cut(s) 67, 645, 727
HgaI GACGC 1 cut(s) 703
HhaI GCGC 2 cut(s) 293, 472
Hin1II CATG 5 cut(s) 165, 238, 290, 370, 826
Hin6I GCGC 2 cut(s) 291, 470
HinP1I GCGC 2 cut(s) 291, 470
HindIII AAGCTT 1 cut(s) 137
HinfI GANTC 4 cut(s) 203, 215, 395, 805
HphI GGTGA 2 cut(s) 249, 507
Hpy188I TCNGA 8 cut(s) 202, 214, 492, 526, 652, 723, 740, 918
Hpy188III TCNNGA 3 cut(s) 632, 698, 823
HpyAV CCTTC 4 cut(s) 48, 423, 519, 872
HpyCH4III ACNGT 4 cut(s) 100, 113, 192, 431
HpyCH4V TGCA 2 cut(s) 554, 849
HpyF10VI GCNNNNNNNGC 3 cut(s) 467, 543, 560
HpyF3I CTNAG 2 cut(s) 722, 908
Hsp92II CATG 5 cut(s) 165, 238, 290, 370, 826
HspAI GCGC 2 cut(s) 291, 470
Ksp22I TGATCA 2 cut(s) 283, 487
Kzo9I GATC 4 cut(s) 283, 487, 674, 694
LmnI GCTCC 4 cut(s) 124, 275, 415, 560
Lsp1109I GCAGC 3 cut(s) 546, 833, 876
LweI GCATC 2 cut(s) 833, 858
MaeI CTAG 1 cut(s) 422
MaeIII GTNAC 1 cut(s) 770
MalI GATC 4 cut(s) 285, 489, 676, 696
MboI GATC 4 cut(s) 283, 487, 674, 694
MboII GAAGA 8 cut(s) 71, 96, 179, 308, 347, 488, 841, 910
MlsI TGGCCA 1 cut(s) 645
MluCI AATT 2 cut(s) 450, 701
MluNI TGGCCA 1 cut(s) 645
MmeI TCCRAC 1 cut(s) 146
MnlI CCTC 8 cut(s) 138, 157, 270, 523, 717, 771, 789, 888
Mox20I TGGCCA 1 cut(s) 645
MscI TGGCCA 1 cut(s) 645
MseI TTAA 1 cut(s) 705
MslI CAYNNNNRTG 1 cut(s) 160
Msp20I TGGCCA 1 cut(s) 645
MspR9I CCNGG 3 cut(s) 69, 177, 572
Mva1269I GAATGC 2 cut(s) 599, 838
MvaI CCWGG 3 cut(s) 69, 177, 572
MwoI GCNNNNNNNGC 3 cut(s) 467, 543, 560
NdeII GATC 4 cut(s) 283, 487, 674, 694
NlaIII CATG 5 cut(s) 165, 238, 290, 370, 826
NlaIV GGNNCC 4 cut(s) 33, 153, 181, 411
NmeAIII GCCGAG 1 cut(s) 386
PagI TCATGA 1 cut(s) 822
PctI GAATGC 2 cut(s) 599, 838
PfeI GAWTC 4 cut(s) 203, 215, 395, 805
PkrI GCNGC 3 cut(s) 536, 848, 866
Psp6I CCWGG 3 cut(s) 67, 175, 570
PspFI CCCAGC 1 cut(s) 273
PspGI CCWGG 3 cut(s) 67, 175, 570
PspN4I GGNNCC 4 cut(s) 33, 153, 181, 411
PspPI GGNCC 1 cut(s) 151
RsaI GTAC 2 cut(s) 45, 541
RsaNI GTAC 2 cut(s) 44, 540
RseI CAYNNNNRTG 1 cut(s) 160
SaqAI TTAA 1 cut(s) 705
SatI GCNGC 3 cut(s) 535, 847, 865
Sau3AI GATC 4 cut(s) 283, 487, 674, 694
Sau96I GGNCC 1 cut(s) 151
ScrFI CCNGG 3 cut(s) 69, 177, 572
SfaNI GCATC 2 cut(s) 833, 858
SinI GGWCC 1 cut(s) 151
SmiMI CAYNNNNRTG 1 cut(s) 160
Sse9I AATT 2 cut(s) 450, 701
SspMI CTAG 1 cut(s) 422
StyD4I CCNGG 3 cut(s) 67, 175, 570
TaaI ACNGT 4 cut(s) 100, 113, 192, 431
TaqI TCGA 1 cut(s) 566
TaqII GACCGA 1 cut(s) 139
TasI AATT 2 cut(s) 450, 701
TatI WGTACW 1 cut(s) 539
TfiI GAWTC 4 cut(s) 203, 215, 395, 805
Tru1I TTAA 1 cut(s) 705
Tru9I TTAA 1 cut(s) 705
TscAI CASTG 3 cut(s) 118, 463, 612
TseI GCWGC 3 cut(s) 534, 846, 864
TspDTI ATGAA 3 cut(s) 387, 429, 842
TspGWI ACGGA 1 cut(s) 855
TspRI CASTG 3 cut(s) 118, 463, 612
VpaK11BI GGWCC 1 cut(s) 151
XapI RAATTY 1 cut(s) 701
XcmI CCANNNNNNNNNTGG 1 cut(s) 84
XspI CTAG 1 cut(s) 422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.