Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016638

Physical Location & Seq

Genomic Coordinates Forward (+)

21009347 .. 21010345

Gene Structure 999 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G51720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGCTATCATCGCAAGCACGTTCGGCACGGGGCTAAGTTACGCCGGGGAGCTTCCATTCAAGCCAGTCACCGGGGGAGAGGTGGGACGAAAGCAGCAGAGAATGGTGGTGGTGAGAGCAGAAGGCGGTGGAGGTATCAATCCGGAGATCAGAAAGAACGAAGATAAGGTTGTTGACTCCGTCGTTGTCACCGAGCTTTCCAAGAACATAACTCCCTATTGCAGGTGTTGGAGGTCGGGGACGTTTCCATTGTGTGATGGGAGTCATGTGAAGCACAACAAAGCTAATGGAGATAACGTTGGCCCTCTTCTTCTCAAGAAACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000422 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005783 GO:0005789 GO:0006914 GO:0006996 GO:0007005 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009894 GO:0009987 GO:0010150 GO:0010259 GO:0010506 GO:0012505 GO:0016020 GO:0016043 GO:0019222 GO:0019867 GO:0022411 GO:0031090 GO:0031323 GO:0031329 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0031984 GO:0032501 GO:0032502 GO:0042175 GO:0042592 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044432 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046983 GO:0048037 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0051536 GO:0051537 GO:0051540 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0061726 GO:0061919 GO:0065007 GO:0065008 GO:0071840 GO:0072593 GO:0090693 GO:0098588 GO:0098771 GO:0098805 GO:0098827 GO:0099402 GO:1903008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CDGSH

Protein Analysis

108

Amino Acids

11.63

Weight (kDa)

9.33

Isoelectric Point (pI)

42.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CDGSH	PF09360	65 - 89	6.9e-09	Iron-binding zinc finger CDGSH type

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0016638)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51720
fragaria_vesca	FvH4_7g28320
malus_domestica	MD01G1187500.v1.1
prunus_persica	Prupe.2G283900_v2.0.a1
pyrus_communis	pycom01g19940
rosa_chinensis	RchiOBHm_Chr1g0375291
rosa_laevigata	RLG00000026671
rosa_multiflora	Rmu_sc0000554.1_g000037
rosa_roxburghii	Rroxscaffold_4G00282860
rosa_rugosa	Rorug01G0390300
rosa_samantha	Rh1AG400600 Rh1BG363800 Rh1CG377000
rosa_wichuraiana	Rw1G035570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	213
Acc36I	ACCTGC	1 cut(s)	213
AccIII	TCCGGA	1 cut(s)	142
AciI	CCGC	1 cut(s)	126
AclI	AACGTT	1 cut(s)	297
AfiI	CCNNNNNNNGG	2 cut(s)	71, 222
AgsI	TTSAA	1 cut(s)	61
AluBI	AGCT	3 cut(s)	52, 196, 284
AluI	AGCT	3 cut(s)	52, 196, 284
Aor13HI	TCCGGA	1 cut(s)	142
AoxI	GGCC	1 cut(s)	301
ApeKI	GCWGC	1 cut(s)	94
AspS9I	GGNCC	1 cut(s)	302
AsuC2I	CCSGG	2 cut(s)	46, 73
AsuHPI	GGTGA	3 cut(s)	61, 124, 181
BbvI	GCAGC	1 cut(s)	106
BccI	CCATC	1 cut(s)	251
BcnI	CCSGG	2 cut(s)	46, 73
BfuAI	ACCTGC	1 cut(s)	213
BisI	GCNGC	1 cut(s)	95
BlsI	GCNGC	1 cut(s)	96
Bme1390I	CCNGG	2 cut(s)	46, 73
BmgT120I	GGNCC	1 cut(s)	302
BmrFI	CCNGG	2 cut(s)	46, 73
BpuEI	CTTGAG	1 cut(s)	299
BpuMI	CCSGG	2 cut(s)	46, 73
BsaJI	CCNNGG	2 cut(s)	45, 72
BsaWI	WCCGGW	1 cut(s)	142
BsaXI	ACNNNNNCTCC	2 cut(s)	282, 312
Bsc4I	CCNNNNNNNGG	2 cut(s)	71, 222
Bse1I	ACTGG	1 cut(s)	65
BseAI	TCCGGA	1 cut(s)	142
BseDI	CCNNGG	2 cut(s)	45, 72
BseLI	CCNNNNNNNGG	2 cut(s)	71, 222
BseNI	ACTGG	1 cut(s)	65
BseXI	GCAGC	1 cut(s)	106
BshFI	GGCC	1 cut(s)	303
BsiSI	CCGG	3 cut(s)	45, 72, 143
BslFI	GGGAC	2 cut(s)	99, 253
BslI	CCNNNNNNNGG	2 cut(s)	71, 222
BsmFI	GGGAC	2 cut(s)	99, 253
BsnI	GGCC	1 cut(s)	303
Bsp13I	TCCGGA	1 cut(s)	142
Bsp143I	GATC	1 cut(s)	147
BspACI	CCGC	1 cut(s)	126
BspANI	GGCC	1 cut(s)	303
BspEI	TCCGGA	1 cut(s)	142
BspMI	ACCTGC	1 cut(s)	213
BsrI	ACTGG	1 cut(s)	65
BssECI	CCNNGG	2 cut(s)	45, 72
BssMI	GATC	1 cut(s)	147
Bst4CI	ACNGT	1 cut(s)	324
Bst6I	CTCTTC	1 cut(s)	312
BstC8I	GCNNGC	1 cut(s)	16
BstDEI	CTNAG	1 cut(s)	35
BstENI	CCTNNNNNAGG	1 cut(s)	220
BstKTI	GATC	1 cut(s)	150
BstMBI	GATC	1 cut(s)	147
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 24
BstSCI	CCNGG	2 cut(s)	44, 71
BstV1I	GCAGC	1 cut(s)	106
BsuRI	GGCC	1 cut(s)	303
BveI	ACCTGC	1 cut(s)	213
Cac8I	GCNNGC	1 cut(s)	16
Cfr13I	GGNCC	1 cut(s)	302
CviAII	CATG	1 cut(s)	266
CviJI	RGCY	7 cut(s)	5, 34, 52, 64, 196, 284, 303
CviKI_1	RGCY	7 cut(s)	5, 34, 52, 64, 196, 284, 303
DdeI	CTNAG	1 cut(s)	35
DpnI	GATC	1 cut(s)	149
DpnII	GATC	1 cut(s)	147
Eam1104I	CTCTTC	1 cut(s)	312
EarI	CTCTTC	1 cut(s)	312
EcoNI	CCTNNNNNAGG	1 cut(s)	220
FaeI	CATG	1 cut(s)	269
FaiI	YATR	2 cut(s)	209, 267
FaqI	GGGAC	2 cut(s)	99, 253
FatI	CATG	1 cut(s)	265
Fnu4HI	GCNGC	1 cut(s)	95
Fsp4HI	GCNGC	1 cut(s)	95
GluI	GCNGC	1 cut(s)	95
HaeIII	GGCC	1 cut(s)	303
HapII	CCGG	3 cut(s)	45, 72, 143
Hin1II	CATG	1 cut(s)	269
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HinfI	GANTC	2 cut(s)	176, 262
HpaII	CCGG	3 cut(s)	45, 72, 143
HphI	GGTGA	3 cut(s)	61, 124, 181
Hpy166II	GTNNAC	1 cut(s)	175
Hpy188I	TCNGA	1 cut(s)	152
Hpy188III	TCNNGA	2 cut(s)	143, 316
Hpy8I	GTNNAC	1 cut(s)	175
Hpy99I	CGWCG	1 cut(s)	185
HpyAV	CCTTC	1 cut(s)	116
HpyCH4III	ACNGT	1 cut(s)	324
HpyCH4IV	ACGT	3 cut(s)	20, 242, 297
HpyCH4V	TGCA	1 cut(s)	222
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 24
HpyF3I	CTNAG	1 cut(s)	35
HpySE526I	ACGT	3 cut(s)	20, 242, 297
Hsp92II	CATG	1 cut(s)	269
Kpn2I	TCCGGA	1 cut(s)	142
Kzo9I	GATC	1 cut(s)	147
LmnI	GCTCC	1 cut(s)	49
LpnPI	CCDG	5 cut(s)	58, 78, 85, 156, 208
Lsp1109I	GCAGC	1 cut(s)	106
MaeII	ACGT	3 cut(s)	20, 242, 297
MaeIII	GTNAC	3 cut(s)	38, 67, 187
MalI	GATC	1 cut(s)	149
MboI	GATC	1 cut(s)	147
MboII	GAAGA	3 cut(s)	173, 299, 302
MlyI	GAGTC	2 cut(s)	170, 271
MmeI	TCCRAC	1 cut(s)	209
MnlI	CCTC	4 cut(s)	73, 125, 225, 315
MroI	TCCGGA	1 cut(s)	142
MspI	CCGG	3 cut(s)	45, 72, 143
MspR9I	CCNGG	2 cut(s)	46, 73
MwoI	GCNNNNNNNGC	2 cut(s)	11, 24
NciI	CCSGG	2 cut(s)	46, 73
NdeII	GATC	1 cut(s)	147
NlaIII	CATG	1 cut(s)	269
NmuCI	GTSAC	2 cut(s)	67, 187
PaqCI	CACCTGC	1 cut(s)	213
PcsI	WCGNNNNNNNCGW	1 cut(s)	189
PflFI	GACNNNGTC	1 cut(s)	179
PkrI	GCNGC	1 cut(s)	96
PleI	GAGTC	2 cut(s)	170, 270
PpsI	GAGTC	2 cut(s)	170, 270
Psp1406I	AACGTT	1 cut(s)	297
PspPI	GGNCC	1 cut(s)	302
PsyI	GACNNNGTC	1 cut(s)	179
SatI	GCNGC	1 cut(s)	95
Sau3AI	GATC	1 cut(s)	147
Sau96I	GGNCC	1 cut(s)	302
SchI	GAGTC	2 cut(s)	170, 271
ScrFI	CCNGG	2 cut(s)	46, 73
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
SsiI	CCGC	1 cut(s)	126
StyD4I	CCNGG	2 cut(s)	44, 71
TaaI	ACNGT	1 cut(s)	324
TaiI	ACGT	3 cut(s)	23, 245, 300
TseFI	GTSAC	2 cut(s)	67, 187
TseI	GCWGC	1 cut(s)	94
Tsp45I	GTSAC	2 cut(s)	67, 187
TspGWI	ACGGA	1 cut(s)	169
Tth111I	GACNNNGTC	1 cut(s)	179
XagI	CCTNNNNNAGG	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.