Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0016638

Physical Location & Seq

Genomic Coordinates Forward (+)

20999540 .. 21000737

Gene Structure 1198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g28320.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGAGTGTGGCATCCACAGTTCTCTATATATCCTCTGCTCCATAAAAATCTCACCTTTCTCCAACCGACAGATCACTTCAAGAAAACCCAGAAACTCCCAGAGACCTATTTCAATGGCGTCCATTATCACCACCGCCGGTTTGGCTCTTCCCGGCTACACCAAATCTTCAGTCCCCGGTTCGAGTCTTGGAAGCACAAGAGCCACAACTTTCGGAACTCACCGCGTCGCCTACTCTTCCGGCGTTGATTTCGGCCGGAGGACGAAGACGGTGGTGAGGGCGGAGGTTCAGCCGCTTAACCCGGAGATTAGAAAGAGTGAGGCCAAGGTTGTGGACTCTGTTGTGGTCACTGAGCTTGCTAAGCCCCTTACTGCTTATTGCAGGTGTTGGAGGTCAGGGACTTTTCCGTTGTGCGATGGAAGCCATGTGAAGCACAATAAAGCTGCCGGTGACAATGTCGGGCCGTTGCTCTTGAAGAAGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000422 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005783 GO:0005789 GO:0006914 GO:0006996 GO:0007005 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009894 GO:0009987 GO:0010150 GO:0010259 GO:0010506 GO:0012505 GO:0016020 GO:0016043 GO:0019222 GO:0019867 GO:0022411 GO:0031090 GO:0031323 GO:0031329 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0031984 GO:0032501 GO:0032502 GO:0042175 GO:0042592 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044432 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046983 GO:0048037 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0051536 GO:0051537 GO:0051540 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0061726 GO:0061919 GO:0065007 GO:0065008 GO:0071840 GO:0072593 GO:0090693 GO:0098588 GO:0098771 GO:0098805 GO:0098827 GO:0099402 GO:1903008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CDGSH

Protein Analysis

162

Amino Acids

17.4

Weight (kDa)

9.98

Isoelectric Point (pI)

43.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CDGSH	PF09360	116 - 142	7.6e-10	Iron-binding zinc finger CDGSH type

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0016638)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51720
fragaria_vesca	FvH4_7g28320
malus_domestica	MD01G1187500.v1.1
prunus_persica	Prupe.2G283900_v2.0.a1
pyrus_communis	pycom01g19940
rosa_chinensis	RchiOBHm_Chr1g0375291
rosa_laevigata	RLG00000026671
rosa_multiflora	Rmu_sc0000554.1_g000037
rosa_roxburghii	Rroxscaffold_4G00282860
rosa_rugosa	Rorug01G0390300
rosa_samantha	Rh1AG400600 Rh1BG363800 Rh1CG377000
rosa_wichuraiana	Rw1G035570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	372
Acc36I	ACCTGC	1 cut(s)	372
AccII	CGCG	1 cut(s)	225
AciI	CCGC	4 cut(s)	135, 223, 281, 293
AcoI	YGGCCR	1 cut(s)	253
AcuI	CTGAAG	1 cut(s)	153
AcyI	GRCGYC	1 cut(s)	119
AgsI	TTSAA	3 cut(s)	81, 114, 475
AluBI	AGCT	2 cut(s)	355, 443
AluI	AGCT	2 cut(s)	355, 443
Alw26I	GTCTC	1 cut(s)	97
AoxI	GGCC	3 cut(s)	253, 321, 461
ApeKI	GCWGC	1 cut(s)	443
ArsI	GACNNNNNNTTYG	2 cut(s)	156, 188
AspS9I	GGNCC	1 cut(s)	461
AsuC2I	CCSGG	3 cut(s)	153, 177, 302
AsuHPI	GGTGA	5 cut(s)	45, 121, 212, 286, 461
BbsI	GAAGAC	1 cut(s)	272
BbvI	GCAGC	1 cut(s)	430
BccI	CCATC	1 cut(s)	410
BceAI	ACGGC	1 cut(s)	448
BcnI	CCSGG	3 cut(s)	153, 177, 302
BcoDI	GTCTC	1 cut(s)	97
BfuAI	ACCTGC	1 cut(s)	372
BglI	GCCNNNNNGGC	1 cut(s)	143
BisI	GCNGC	2 cut(s)	293, 444
BlpI	GCTNAGC	1 cut(s)	360
BlsI	GCNGC	2 cut(s)	294, 445
Bme1390I	CCNGG	3 cut(s)	153, 177, 302
BmgT120I	GGNCC	1 cut(s)	461
BmrFI	CCNGG	3 cut(s)	153, 177, 302
BmsI	GCATC	1 cut(s)	21
BpiI	GAAGAC	1 cut(s)	272
Bpu1102I	GCTNAGC	1 cut(s)	360
BpuMI	CCSGG	3 cut(s)	153, 177, 302
BsaHI	GRCGYC	1 cut(s)	119
BsaI	GGTCTC	1 cut(s)	97
BsaJI	CCNNGG	2 cut(s)	175, 324
Bse118I	RCCGGY	2 cut(s)	137, 446
BseDI	CCNNGG	2 cut(s)	175, 324
BseGI	GGATG	1 cut(s)	12
BseMII	CTCAG	1 cut(s)	342
BseX3I	CGGCCG	1 cut(s)	253
BseXI	GCAGC	1 cut(s)	430
Bsh1236I	CGCG	1 cut(s)	225
Bsh1285I	CGRYCG	1 cut(s)	256
BshFI	GGCC	3 cut(s)	255, 323, 463
BsiEI	CGRYCG	1 cut(s)	256
BsiSI	CCGG	7 cut(s)	138, 153, 177, 240, 256, 302, 447
BslFI	GGGAC	2 cut(s)	158, 412
BsmAI	GTCTC	1 cut(s)	97
BsmFI	GGGAC	2 cut(s)	158, 412
BsnI	GGCC	3 cut(s)	255, 323, 463
Bso31I	GGTCTC	1 cut(s)	97
Bsp143I	GATC	1 cut(s)	72
Bsp1720I	GCTNAGC	1 cut(s)	360
BspACI	CCGC	4 cut(s)	135, 223, 281, 293
BspANI	GGCC	3 cut(s)	255, 323, 463
BspCNI	CTCAG	1 cut(s)	343
BspFNI	CGCG	1 cut(s)	225
BspMI	ACCTGC	1 cut(s)	372
BspQI	GCTCTTC	1 cut(s)	153
BspTNI	GGTCTC	1 cut(s)	97
BsrFI	RCCGGY	2 cut(s)	137, 446
BssAI	RCCGGY	2 cut(s)	137, 446
BssECI	CCNNGG	2 cut(s)	175, 324
BssMI	GATC	1 cut(s)	72
BssNI	GRCGYC	1 cut(s)	119
BssT1I	CCWWGG	1 cut(s)	324
Bst4CI	ACNGT	2 cut(s)	20, 271
Bst6I	CTCTTC	2 cut(s)	153, 241
BstACI	GRCGYC	1 cut(s)	119
BstC8I	GCNNGC	1 cut(s)	357
BstDEI	CTNAG	2 cut(s)	351, 360
BstF5I	GGATG	1 cut(s)	12
BstFNI	CGCG	1 cut(s)	225
BstKTI	GATC	1 cut(s)	75
BstMAI	GTCTC	1 cut(s)	97
BstMBI	GATC	1 cut(s)	72
BstMCI	CGRYCG	1 cut(s)	256
BstMWI	GCNNNNNNNGC	3 cut(s)	143, 361, 420
BstSCI	CCNGG	3 cut(s)	151, 175, 300
BstUI	CGCG	1 cut(s)	225
BstV1I	GCAGC	1 cut(s)	430
BstV2I	GAAGAC	1 cut(s)	272
BstXI	CCANNNNNNTGG	1 cut(s)	331
BstZI	CGGCCG	1 cut(s)	253
BsuRI	GGCC	3 cut(s)	255, 323, 463
BtgZI	GCGATG	1 cut(s)	429
BtsCI	GGATG	1 cut(s)	12
BtsIMutI	CAGTG	1 cut(s)	348
BveI	ACCTGC	1 cut(s)	372
Cac8I	GCNNGC	1 cut(s)	357
Cfr10I	RCCGGY	2 cut(s)	137, 446
Cfr13I	GGNCC	1 cut(s)	461
CseI	GACGC	2 cut(s)	108, 214
CviAII	CATG	1 cut(s)	425
DdeI	CTNAG	2 cut(s)	351, 360
DpnI	GATC	1 cut(s)	74
DpnII	GATC	1 cut(s)	72
EaeI	YGGCCR	1 cut(s)	253
EagI	CGGCCG	1 cut(s)	253
Eam1104I	CTCTTC	2 cut(s)	153, 241
EarI	CTCTTC	2 cut(s)	153, 241
EciI	GGCGGA	1 cut(s)	296
EclXI	CGGCCG	1 cut(s)	253
Eco130I	CCWWGG	1 cut(s)	324
Eco31I	GGTCTC	1 cut(s)	97
Eco52I	CGGCCG	1 cut(s)	253
Eco57I	CTGAAG	1 cut(s)	153
EcoT14I	CCWWGG	1 cut(s)	324
ErhI	CCWWGG	1 cut(s)	324
FaeI	CATG	1 cut(s)	428
FaiI	YATR	4 cut(s)	28, 30, 44, 426
FaqI	GGGAC	2 cut(s)	158, 412
FatI	CATG	1 cut(s)	424
Fnu4HI	GCNGC	2 cut(s)	293, 444
Fsp4HI	GCNGC	2 cut(s)	293, 444
GluI	GCNGC	2 cut(s)	293, 444
HaeIII	GGCC	3 cut(s)	255, 323, 463
HapII	CCGG	7 cut(s)	138, 153, 177, 240, 256, 302, 447
HgaI	GACGC	2 cut(s)	108, 214
Hin1I	GRCGYC	1 cut(s)	119
Hin1II	CATG	1 cut(s)	428
HinfI	GANTC	2 cut(s)	184, 335
HpaII	CCGG	7 cut(s)	138, 153, 177, 240, 256, 302, 447
HphI	GGTGA	5 cut(s)	45, 121, 212, 286, 461
Hpy166II	GTNNAC	1 cut(s)	334
Hpy188I	TCNGA	1 cut(s)	215
Hpy188III	TCNNGA	2 cut(s)	81, 472
Hpy8I	GTNNAC	1 cut(s)	334
Hpy99I	CGWCG	1 cut(s)	230
HpyAV	CCTTC	1 cut(s)	472
HpyCH4III	ACNGT	2 cut(s)	20, 271
HpyCH4V	TGCA	1 cut(s)	381
HpyF10VI	GCNNNNNNNGC	3 cut(s)	143, 361, 420
HpyF3I	CTNAG	2 cut(s)	351, 360
Hsp92I	GRCGYC	1 cut(s)	119
Hsp92II	CATG	1 cut(s)	428
Kzo9I	GATC	1 cut(s)	72
LguI	GCTCTTC	1 cut(s)	153
LmnI	GCTCC	1 cut(s)	44
Lsp1109I	GCAGC	1 cut(s)	430
LweI	GCATC	1 cut(s)	21
MaeIII	GTNAC	2 cut(s)	346, 449
MalI	GATC	1 cut(s)	74
MboI	GATC	1 cut(s)	72
MboII	GAAGA	4 cut(s)	140, 159, 228, 277
MlyI	GAGTC	2 cut(s)	193, 329
MmeI	TCCRAC	2 cut(s)	87, 368
MnlI	CCTC	6 cut(s)	44, 252, 270, 277, 313, 384
MseI	TTAA	1 cut(s)	297
MspI	CCGG	7 cut(s)	138, 153, 177, 240, 256, 302, 447
MspR9I	CCNGG	3 cut(s)	153, 177, 302
MvnI	CGCG	1 cut(s)	225
MwoI	GCNNNNNNNGC	3 cut(s)	143, 361, 420
NciI	CCSGG	3 cut(s)	153, 177, 302
NdeII	GATC	1 cut(s)	72
NlaIII	CATG	1 cut(s)	428
NmuCI	GTSAC	2 cut(s)	346, 449
PaqCI	CACCTGC	1 cut(s)	372
PciSI	GCTCTTC	1 cut(s)	153
PflFI	GACNNNGTC	1 cut(s)	455
PkrI	GCNGC	2 cut(s)	294, 445
PleI	GAGTC	2 cut(s)	192, 329
PpsI	GAGTC	2 cut(s)	192, 329
PspPI	GGNCC	1 cut(s)	461
PsyI	GACNNNGTC	1 cut(s)	455
SapI	GCTCTTC	1 cut(s)	153
SaqAI	TTAA	1 cut(s)	297
SatI	GCNGC	2 cut(s)	293, 444
Sau3AI	GATC	1 cut(s)	72
Sau96I	GGNCC	1 cut(s)	461
SchI	GAGTC	2 cut(s)	193, 329
ScrFI	CCNGG	3 cut(s)	153, 177, 302
SetI	ASST	8 cut(s)	58, 109, 288, 330, 357, 386, 395, 445
SfaNI	GCATC	1 cut(s)	21
SsiI	CCGC	4 cut(s)	135, 223, 281, 293
StyD4I	CCNGG	3 cut(s)	151, 175, 300
StyI	CCWWGG	1 cut(s)	324
TaaI	ACNGT	2 cut(s)	20, 271
TaqI	TCGA	1 cut(s)	182
TauI	GCSGC	1 cut(s)	295
Tru1I	TTAA	1 cut(s)	297
Tru9I	TTAA	1 cut(s)	297
TscAI	CASTG	1 cut(s)	355
TseFI	GTSAC	2 cut(s)	346, 449
TseI	GCWGC	1 cut(s)	443
Tsp45I	GTSAC	2 cut(s)	346, 449
TspGWI	ACGGA	1 cut(s)	396
TspRI	CASTG	1 cut(s)	355
Tth111I	GACNNNGTC	1 cut(s)	455
XcmI	CCANNNNNNNNNTGG	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.