Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0016638

Physical Location & Seq

Genomic Coordinates Forward (+)

28155480 .. 28156392

Gene Structure 913 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G283900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGCGTCGATTGTAAGCACGGCCGGATTAACTTCTTGCGGTCACAGAAAACCATCAATGGAGGGTTTGAAACTGAGTAGCAGAAAAGCTATGACCTTCGGGACCCAATTGGCCTACCCCGTTTCCTCTTCTTCTGGTTGTGGTTATAGCAGAAGGATGAAGCCCATGGTGGTGGTGAAAGCAGAGGCTCAACCCATAAACCCTGAAATTAGGAAGAGCGAGGAAAAGGTTGTGGACTCTGTTGTCGTCAGTGAACTCTCTAAGCCCCTCACAGTTTATTGCAGGTGTTGGAGGTCGGGGACTTTCCCTCTGTGCGATGGAAGCCATGTAAAGCACAATAAGGCTACTGGTGACAACGTTGGACCATTGCTCCTCAAGAAGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000422 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005783 GO:0005789 GO:0006914 GO:0006996 GO:0007005 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009894 GO:0009987 GO:0010150 GO:0010259 GO:0010506 GO:0012505 GO:0016020 GO:0016043 GO:0019222 GO:0019867 GO:0022411 GO:0031090 GO:0031323 GO:0031329 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0031984 GO:0032501 GO:0032502 GO:0042175 GO:0042592 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044432 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046983 GO:0048037 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0051536 GO:0051537 GO:0051540 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0061726 GO:0061919 GO:0065007 GO:0065008 GO:0071840 GO:0072593 GO:0090693 GO:0098588 GO:0098771 GO:0098805 GO:0098827 GO:0099402 GO:1903008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CDGSH

Protein Analysis

129

Amino Acids

13.84

Weight (kDa)

9.68

Isoelectric Point (pI)

45.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016638)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51720
fragaria_vesca	FvH4_7g28320
malus_domestica	MD01G1187500.v1.1
prunus_persica	Prupe.2G283900_v2.0.a1
pyrus_communis	pycom01g19940
rosa_chinensis	RchiOBHm_Chr1g0375291
rosa_laevigata	RLG00000026671
rosa_multiflora	Rmu_sc0000554.1_g000037
rosa_roxburghii	Rroxscaffold_4G00282860
rosa_rugosa	Rorug01G0390300
rosa_samantha	Rh1AG400600 Rh1BG363800 Rh1CG377000
rosa_wichuraiana	Rw1G035570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	273
AasI	GACNNNNNNGTC	1 cut(s)	242
Acc36I	ACCTGC	1 cut(s)	273
AciI	CCGC	1 cut(s)	39
AclI	AACGTT	1 cut(s)	357
AcoI	YGGCCR	1 cut(s)	21
AcyI	GRCGYC	1 cut(s)	5
AgsI	TTSAA	1 cut(s)	70
AluBI	AGCT	1 cut(s)	89
AluI	AGCT	1 cut(s)	89
AoxI	GGCC	2 cut(s)	21, 111
AspS9I	GGNCC	2 cut(s)	102, 362
AsuHPI	GGTGA	2 cut(s)	187, 362
AvaII	GGWCC	2 cut(s)	102, 362
BccI	CCATC	2 cut(s)	61, 311
BceAI	ACGGC	1 cut(s)	36
BfuAI	ACCTGC	1 cut(s)	273
Bme18I	GGWCC	2 cut(s)	102, 362
BmgT120I	GGNCC	2 cut(s)	102, 362
BmiI	GGNNCC	2 cut(s)	103, 104
BpuEI	CTTGAG	1 cut(s)	359
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	165
BsaXI	ACNNNNNCTCC	2 cut(s)	354, 384
Bse1I	ACTGG	1 cut(s)	352
Bse3DI	GCAATG	1 cut(s)	365
BseDI	CCNNGG	1 cut(s)	165
BseGI	GGATG	1 cut(s)	162
BseMI	GCAATG	1 cut(s)	365
BseMII	CTCAG	1 cut(s)	65
BseNI	ACTGG	1 cut(s)	352
BseRI	GAGGAG	1 cut(s)	362
BseX3I	CGGCCG	1 cut(s)	21
Bsh1285I	CGRYCG	1 cut(s)	24
BshFI	GGCC	2 cut(s)	23, 113
BsiEI	CGRYCG	1 cut(s)	24
BsiSI	CCGG	1 cut(s)	24
BslFI	GGGAC	2 cut(s)	115, 313
BsmFI	GGGAC	2 cut(s)	115, 313
BsnI	GGCC	2 cut(s)	23, 113
Bsp19I	CCATGG	1 cut(s)	165
BspACI	CCGC	1 cut(s)	39
BspANI	GGCC	2 cut(s)	23, 113
BspCNI	CTCAG	1 cut(s)	66
BspLI	GGNNCC	2 cut(s)	103, 104
BspMI	ACCTGC	1 cut(s)	273
BspQI	GCTCTTC	1 cut(s)	209
BsrDI	GCAATG	1 cut(s)	365
BsrI	ACTGG	1 cut(s)	352
BssECI	CCNNGG	1 cut(s)	165
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	165
Bst4CI	ACNGT	1 cut(s)	274
Bst6I	CTCTTC	2 cut(s)	133, 209
BstACI	GRCGYC	1 cut(s)	5
BstDEI	CTNAG	2 cut(s)	74, 261
BstDSI	CCRYGG	1 cut(s)	165
BstF5I	GGATG	1 cut(s)	162
BstMCI	CGRYCG	1 cut(s)	24
BstMWI	GCNNNNNNNGC	1 cut(s)	321
BstXI	CCANNNNNNTGG	1 cut(s)	172
BstZI	CGGCCG	1 cut(s)	21
BsuRI	GGCC	2 cut(s)	23, 113
BtgI	CCRYGG	1 cut(s)	165
BtgZI	GCGATG	1 cut(s)	330
BtsCI	GGATG	1 cut(s)	162
BtsIMutI	CAGTG	1 cut(s)	256
BveI	ACCTGC	1 cut(s)	273
Cfr13I	GGNCC	2 cut(s)	102, 362
CviAII	CATG	2 cut(s)	166, 326
CviJI	RGCY	8 cut(s)	23, 89, 113, 163, 188, 265, 324, 344
CviKI_1	RGCY	8 cut(s)	23, 89, 113, 163, 188, 265, 324, 344
DdeI	CTNAG	2 cut(s)	74, 261
DrdI	GACNNNNNNGTC	1 cut(s)	242
DseDI	GACNNNNNNGTC	1 cut(s)	242
EaeI	YGGCCR	1 cut(s)	21
EagI	CGGCCG	1 cut(s)	21
Eam1104I	CTCTTC	2 cut(s)	133, 209
EarI	CTCTTC	2 cut(s)	133, 209
EclXI	CGGCCG	1 cut(s)	21
Eco130I	CCWWGG	1 cut(s)	165
Eco47I	GGWCC	2 cut(s)	102, 362
Eco52I	CGGCCG	1 cut(s)	21
EcoO109I	RGGNCCY	1 cut(s)	102
EcoT14I	CCWWGG	1 cut(s)	165
ErhI	CCWWGG	1 cut(s)	165
FaeI	CATG	2 cut(s)	169, 329
FaiI	YATR	5 cut(s)	92, 147, 167, 197, 327
FaqI	GGGAC	2 cut(s)	115, 313
FatI	CATG	2 cut(s)	165, 325
FokI	GGATG	1 cut(s)	169
HaeIII	GGCC	2 cut(s)	23, 113
HapII	CCGG	1 cut(s)	24
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	169, 329
HinfI	GANTC	1 cut(s)	236
HpaII	CCGG	1 cut(s)	24
HphI	GGTGA	2 cut(s)	187, 362
Hpy166II	GTNNAC	2 cut(s)	235, 254
Hpy188III	TCNNGA	2 cut(s)	100, 376
Hpy8I	GTNNAC	2 cut(s)	235, 254
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	2 cut(s)	106, 147
HpyCH4III	ACNGT	1 cut(s)	274
HpyCH4IV	ACGT	1 cut(s)	357
HpyCH4V	TGCA	1 cut(s)	282
HpyF10VI	GCNNNNNNNGC	1 cut(s)	321
HpyF3I	CTNAG	2 cut(s)	74, 261
HpySE526I	ACGT	1 cut(s)	357
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	169, 329
KflI	GGGWCCC	1 cut(s)	102
LguI	GCTCTTC	1 cut(s)	209
LmnI	GCTCC	1 cut(s)	375
LpnPI	CCDG	5 cut(s)	37, 120, 216, 268, 333
MaeII	ACGT	1 cut(s)	357
MaeIII	GTNAC	2 cut(s)	41, 350
MboII	GAAGA	3 cut(s)	120, 123, 226
MfeI	CAATTG	1 cut(s)	107
MluCI	AATT	2 cut(s)	107, 207
MlyI	GAGTC	1 cut(s)	230
MmeI	TCCRAC	2 cut(s)	269, 340
MnlI	CCTC	8 cut(s)	55, 136, 178, 214, 278, 285, 318, 383
MseI	TTAA	1 cut(s)	29
MslI	CAYNNNNRTG	1 cut(s)	170
MspI	CCGG	1 cut(s)	24
MunI	CAATTG	1 cut(s)	107
MwoI	GCNNNNNNNGC	1 cut(s)	321
NcoI	CCATGG	1 cut(s)	165
NlaIII	CATG	2 cut(s)	169, 329
NlaIV	GGNNCC	2 cut(s)	103, 104
NmuCI	GTSAC	2 cut(s)	41, 350
PaqCI	CACCTGC	1 cut(s)	273
PciSI	GCTCTTC	1 cut(s)	209
PleI	GAGTC	1 cut(s)	230
PpsI	GAGTC	1 cut(s)	230
PpuMI	RGGWCCY	1 cut(s)	102
Psp1406I	AACGTT	1 cut(s)	357
Psp5II	RGGWCCY	1 cut(s)	102
PspN4I	GGNNCC	2 cut(s)	103, 104
PspPI	GGNCC	2 cut(s)	102, 362
PspPPI	RGGWCCY	1 cut(s)	102
RseI	CAYNNNNRTG	1 cut(s)	170
SapI	GCTCTTC	1 cut(s)	209
SaqAI	TTAA	1 cut(s)	29
Sau96I	GGNCC	2 cut(s)	102, 362
SchI	GAGTC	1 cut(s)	230
SetI	ASST	6 cut(s)	91, 98, 231, 287, 296, 360
SinI	GGWCC	2 cut(s)	102, 362
SmiMI	CAYNNNNRTG	1 cut(s)	170
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
Sse9I	AATT	2 cut(s)	107, 207
SsiI	CCGC	1 cut(s)	39
StyI	CCWWGG	1 cut(s)	165
TaaI	ACNGT	1 cut(s)	274
TaiI	ACGT	1 cut(s)	360
TaqI	TCGA	1 cut(s)	8
TasI	AATT	2 cut(s)	107, 207
Tru1I	TTAA	1 cut(s)	29
Tru9I	TTAA	1 cut(s)	29
TscAI	CASTG	1 cut(s)	256
TseFI	GTSAC	2 cut(s)	41, 350
Tsp45I	GTSAC	2 cut(s)	41, 350
TspDTI	ATGAA	1 cut(s)	173
TspRI	CASTG	1 cut(s)	256
VpaK11BI	GGWCC	2 cut(s)	102, 362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.