Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0016638

Physical Location & Seq

Genomic Coordinates Reverse (-)

49323526 .. 49325243

Gene Structure 1718 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG363800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGTGTCGATTTTCACCACCACCGCTCTGGTTTCTTCCGGCTACACCAAATCGTCAAGCCCCTGTTCGAATCTCAGCAGCACAAGAGCCACAAACTTCGGAGCTCACCGCTTCGCCTACCCTTCCGGCGTAGATTTCAGCCGGAGGCCGAAGACAAGCGCGGTGGTGAGAGCGGAGGTTCAGCCGATTAACCCAGAGATTAGGAAGACTGAGGCGAAGGTTGTGGACTCTGTTGTGGTCACTGAGCTCGCTAAGCCCCTCACTGCTTACTGCCGGTGTTGGAGGTCAGGGACTTTCCCCTTGTGCGATGGAAGCCATGTGAAGCATAATAAAGCTACTGGTGACAATGTCGGGCCATTGCTCTTGAAGAAGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000422 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005783 GO:0005789 GO:0006914 GO:0006996 GO:0007005 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009894 GO:0009987 GO:0010150 GO:0010259 GO:0010506 GO:0012505 GO:0016020 GO:0016043 GO:0019222 GO:0019867 GO:0022411 GO:0031090 GO:0031323 GO:0031329 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0031984 GO:0032501 GO:0032502 GO:0042175 GO:0042592 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044432 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046983 GO:0048037 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0051536 GO:0051537 GO:0051540 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0061726 GO:0061919 GO:0065007 GO:0065008 GO:0071840 GO:0072593 GO:0090693 GO:0098588 GO:0098771 GO:0098805 GO:0098827 GO:0099402 GO:1903008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CDGSH

Protein Analysis

125

Amino Acids

13.53

Weight (kDa)

9.65

Isoelectric Point (pI)

38.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CDGSH	PF09360	78 - 106	3.8e-10	Iron-binding zinc finger CDGSH type

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0016638)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51720
fragaria_vesca	FvH4_7g28320
malus_domestica	MD01G1187500.v1.1
prunus_persica	Prupe.2G283900_v2.0.a1
pyrus_communis	pycom01g19940
rosa_chinensis	RchiOBHm_Chr1g0375291
rosa_laevigata	RLG00000026671
rosa_multiflora	Rmu_sc0000554.1_g000037
rosa_roxburghii	Rroxscaffold_4G00282860
rosa_rugosa	Rorug01G0390300
rosa_samantha	Rh1AG400600 Rh1BG363800 Rh1CG377000
rosa_wichuraiana	Rw1G035570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	26, 173
AccII	CGCG	1 cut(s)	161
AciI	CCGC	4 cut(s)	24, 109, 161, 173
AgsI	TTSAA	1 cut(s)	367
AluBI	AGCT	3 cut(s)	104, 247, 335
AluI	AGCT	3 cut(s)	104, 247, 335
Alw21I	GWGCWC	2 cut(s)	106, 249
AoxI	GGCC	2 cut(s)	146, 353
ApeKI	GCWGC	1 cut(s)	78
AspLEI	GCGC	1 cut(s)	161
AspS9I	GGNCC	1 cut(s)	353
AsuHPI	GGTGA	4 cut(s)	7, 98, 178, 353
AsuII	TTCGAA	1 cut(s)	68
BanII	GRGCYC	2 cut(s)	106, 249
BbsI	GAAGAC	2 cut(s)	158, 212
Bbv12I	GWGCWC	2 cut(s)	106, 249
BbvI	GCAGC	1 cut(s)	90
BccI	CCATC	1 cut(s)	302
BisI	GCNGC	1 cut(s)	79
BlpI	GCTNAGC	1 cut(s)	252
BlsI	GCNGC	1 cut(s)	80
BmgT120I	GGNCC	1 cut(s)	353
BpiI	GAAGAC	2 cut(s)	158, 212
Bpu1102I	GCTNAGC	1 cut(s)	252
Bpu14I	TTCGAA	1 cut(s)	68
Bse118I	RCCGGY	1 cut(s)	273
Bse1I	ACTGG	1 cut(s)	343
Bse3DI	GCAATG	1 cut(s)	356
BseMI	GCAATG	1 cut(s)	356
BseMII	CTCAG	3 cut(s)	88, 201, 234
BseNI	ACTGG	1 cut(s)	343
BseXI	GCAGC	1 cut(s)	90
Bsh1236I	CGCG	1 cut(s)	161
BshFI	GGCC	2 cut(s)	148, 355
BsiHKAI	GWGCWC	2 cut(s)	106, 249
BsiSI	CCGG	4 cut(s)	39, 126, 142, 274
BslFI	GGGAC	1 cut(s)	304
BsmFI	GGGAC	1 cut(s)	304
BsnI	GGCC	2 cut(s)	148, 355
Bsp119I	TTCGAA	1 cut(s)	68
Bsp1286I	GDGCHC	2 cut(s)	106, 249
Bsp1720I	GCTNAGC	1 cut(s)	252
BspACI	CCGC	4 cut(s)	24, 109, 161, 173
BspANI	GGCC	2 cut(s)	148, 355
BspCNI	CTCAG	3 cut(s)	87, 202, 235
BspFNI	CGCG	1 cut(s)	161
BspT104I	TTCGAA	1 cut(s)	68
BsrBI	CCGCTC	2 cut(s)	26, 173
BsrDI	GCAATG	1 cut(s)	356
BsrFI	RCCGGY	1 cut(s)	273
BsrI	ACTGG	1 cut(s)	343
BssAI	RCCGGY	1 cut(s)	273
BstBI	TTCGAA	1 cut(s)	68
BstC8I	GCNNGC	1 cut(s)	249
BstDEI	CTNAG	4 cut(s)	74, 210, 243, 252
BstFNI	CGCG	1 cut(s)	161
BstHHI	GCGC	1 cut(s)	161
BstMWI	GCNNNNNNNGC	2 cut(s)	253, 312
BstUI	CGCG	1 cut(s)	161
BstV1I	GCAGC	1 cut(s)	90
BstV2I	GAAGAC	2 cut(s)	158, 212
BstXI	CCANNNNNNTGG	1 cut(s)	28
BsuRI	GGCC	2 cut(s)	148, 355
BtgZI	GCGATG	1 cut(s)	321
BtsI	GCAGTG	1 cut(s)	261
BtsIMutI	CAGTG	2 cut(s)	240, 261
Cac8I	GCNNGC	1 cut(s)	249
CfoI	GCGC	1 cut(s)	161
Cfr10I	RCCGGY	1 cut(s)	273
Cfr13I	GGNCC	1 cut(s)	353
CspCI	CAANNNNNGTGG	2 cut(s)	144, 179
CviAII	CATG	1 cut(s)	317
DdeI	CTNAG	4 cut(s)	74, 210, 243, 252
Ecl136II	GAGCTC	2 cut(s)	104, 247
Eco24I	GRGCYC	2 cut(s)	106, 249
Eco53kI	GAGCTC	2 cut(s)	104, 247
EcoICRI	GAGCTC	2 cut(s)	104, 247
EcoT38I	GRGCYC	2 cut(s)	106, 249
FaeI	CATG	1 cut(s)	320
FaiI	YATR	2 cut(s)	318, 327
FaqI	GGGAC	1 cut(s)	304
FatI	CATG	1 cut(s)	316
Fnu4HI	GCNGC	1 cut(s)	79
FriOI	GRGCYC	2 cut(s)	106, 249
Fsp4HI	GCNGC	1 cut(s)	79
GlaI	GCGC	1 cut(s)	160
GluI	GCNGC	1 cut(s)	79
HaeIII	GGCC	2 cut(s)	148, 355
HapII	CCGG	4 cut(s)	39, 126, 142, 274
HhaI	GCGC	1 cut(s)	161
Hin1II	CATG	1 cut(s)	320
Hin6I	GCGC	1 cut(s)	159
HinP1I	GCGC	1 cut(s)	159
HinfI	GANTC	2 cut(s)	70, 227
HpaII	CCGG	4 cut(s)	39, 126, 142, 274
HphI	GGTGA	4 cut(s)	7, 98, 178, 353
Hpy166II	GTNNAC	1 cut(s)	226
Hpy188I	TCNGA	1 cut(s)	101
Hpy188III	TCNNGA	1 cut(s)	364
Hpy8I	GTNNAC	1 cut(s)	226
HpyAV	CCTTC	3 cut(s)	132, 211, 364
HpyF10VI	GCNNNNNNNGC	2 cut(s)	253, 312
HpyF3I	CTNAG	4 cut(s)	74, 210, 243, 252
Hsp92II	CATG	1 cut(s)	320
HspAI	GCGC	1 cut(s)	159
LmnI	GCTCC	1 cut(s)	101
LpnPI	CCDG	9 cut(s)	14, 52, 76, 139, 155, 207, 273, 287, 324
Lsp1109I	GCAGC	1 cut(s)	90
MaeIII	GTNAC	2 cut(s)	238, 341
MbiI	CCGCTC	2 cut(s)	26, 173
MboII	GAAGA	3 cut(s)	27, 163, 217
MhlI	GDGCHC	2 cut(s)	106, 249
MlyI	GAGTC	1 cut(s)	221
MmeI	TCCRAC	1 cut(s)	260
MnlI	CCTC	5 cut(s)	138, 169, 205, 269, 276
MseI	TTAA	1 cut(s)	189
MspI	CCGG	4 cut(s)	39, 126, 142, 274
MvnI	CGCG	1 cut(s)	161
MwoI	GCNNNNNNNGC	2 cut(s)	253, 312
NlaIII	CATG	1 cut(s)	320
NmuCI	GTSAC	2 cut(s)	238, 341
NspV	TTCGAA	1 cut(s)	68
PfeI	GAWTC	1 cut(s)	70
PflFI	GACNNNGTC	1 cut(s)	347
PkrI	GCNGC	1 cut(s)	80
PleI	GAGTC	1 cut(s)	221
PpsI	GAGTC	1 cut(s)	221
Psp124BI	GAGCTC	2 cut(s)	106, 249
PspPI	GGNCC	1 cut(s)	353
PsyI	GACNNNGTC	1 cut(s)	347
SacI	GAGCTC	2 cut(s)	106, 249
SaqAI	TTAA	1 cut(s)	189
SatI	GCNGC	1 cut(s)	79
Sau96I	GGNCC	1 cut(s)	353
SchI	GAGTC	1 cut(s)	221
SduI	GDGCHC	2 cut(s)	106, 249
SetI	ASST	6 cut(s)	106, 180, 222, 249, 287, 337
SfuI	TTCGAA	1 cut(s)	68
SsiI	CCGC	4 cut(s)	24, 109, 161, 173
SstI	GAGCTC	2 cut(s)	106, 249
TaqI	TCGA	2 cut(s)	8, 68
TfiI	GAWTC	1 cut(s)	70
Tru1I	TTAA	1 cut(s)	189
Tru9I	TTAA	1 cut(s)	189
TscAI	CASTG	2 cut(s)	247, 268
TseFI	GTSAC	2 cut(s)	238, 341
TseI	GCWGC	1 cut(s)	78
Tsp45I	GTSAC	2 cut(s)	238, 341
TspRI	CASTG	2 cut(s)	247, 268
Tth111I	GACNNNGTC	1 cut(s)	347
XcmI	CCANNNNNNNNNTGG	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.