Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0016638

Physical Location & Seq

Genomic Coordinates Forward (+)

18441229 .. 18443028

Gene Structure 1800 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g19940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGCGTCGATTGTGAGCACTGCGGGGTTTATTTCATGCGGTGGTTTGAACCGGAGCAGCGGGAGATCGACCACCACGTTCGGGACCCAGTTGGCCTACCCTTTATCCTCTTCTTTCGGCGGTGGTTGTAGCAGGAGGCTGAAGCCGGCGGTGGTGGTTGTGAGAGCGGAGGCTCAGCCTATAAACCCCGAAATTAGGAAGGCCGAGGAGAAGGTTGTGGACACTGTTTTGGTCCCTGAGCTCTCTAAGCCCCTCACTGCTTATTGCAGGTGTTGGAGGTCAGGGACTTTCCCGCTGTGCGATGGAAGTCATGTAAAGCACAATAAAGCTACTGGTGATAATGTTGGACCGTTGCTCGTCAAGAAGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000422 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005783 GO:0005789 GO:0006914 GO:0006996 GO:0007005 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009894 GO:0009987 GO:0010150 GO:0010259 GO:0010506 GO:0012505 GO:0016020 GO:0016043 GO:0019222 GO:0019867 GO:0022411 GO:0031090 GO:0031323 GO:0031329 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0031984 GO:0032501 GO:0032502 GO:0042175 GO:0042592 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044432 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046983 GO:0048037 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0051536 GO:0051537 GO:0051540 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0061726 GO:0061919 GO:0065007 GO:0065008 GO:0071840 GO:0072593 GO:0090693 GO:0098588 GO:0098771 GO:0098805 GO:0098827 GO:0099402 GO:1903008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CDGSH

Protein Analysis

124

Amino Acids

13.06

Weight (kDa)

9.62

Isoelectric Point (pI)

53.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CDGSH	PF09360	73 - 104	4.6e-10	Iron-binding zinc finger CDGSH type

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016638)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51720
fragaria_vesca	FvH4_7g28320
malus_domestica	MD01G1187500.v1.1
prunus_persica	Prupe.2G283900_v2.0.a1
pyrus_communis	pycom01g19940
rosa_chinensis	RchiOBHm_Chr1g0375291
rosa_laevigata	RLG00000026671
rosa_multiflora	Rmu_sc0000554.1_g000037
rosa_roxburghii	Rroxscaffold_4G00282860
rosa_rugosa	Rorug01G0390300
rosa_samantha	Rh1AG400600 Rh1BG363800 Rh1CG377000
rosa_wichuraiana	Rw1G035570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	258
Acc36I	ACCTGC	1 cut(s)	258
AccBSI	CCGCTC	1 cut(s)	167
AciI	CCGC	7 cut(s)	23, 39, 60, 120, 149, 167, 293
AcuI	CTGAAG	1 cut(s)	161
AcyI	GRCGYC	1 cut(s)	5
AfiI	CCNNNNNNNGG	2 cut(s)	81, 195
AgsI	TTSAA	1 cut(s)	49
AluBI	AGCT	2 cut(s)	241, 329
AluI	AGCT	2 cut(s)	241, 329
Alw21I	GWGCWC	2 cut(s)	20, 243
AoxI	GGCC	2 cut(s)	93, 201
ApeKI	GCWGC	1 cut(s)	57
AspS9I	GGNCC	3 cut(s)	84, 232, 347
AsuHPI	GGTGA	1 cut(s)	347
AvaII	GGWCC	3 cut(s)	84, 232, 347
BanII	GRGCYC	1 cut(s)	243
Bbv12I	GWGCWC	2 cut(s)	20, 243
BbvI	GCAGC	1 cut(s)	69
BccI	CCATC	1 cut(s)	296
BfuAI	ACCTGC	1 cut(s)	258
BisI	GCNGC	1 cut(s)	58
BlpI	GCTNAGC	1 cut(s)	174
BlsI	GCNGC	1 cut(s)	59
Bme18I	GGWCC	3 cut(s)	84, 232, 347
BmgT120I	GGNCC	3 cut(s)	84, 232, 347
BmiI	GGNNCC	3 cut(s)	85, 86, 234
BmrI	ACTGGG	1 cut(s)	82
BmuI	ACTGGG	1 cut(s)	82
Bpu10I	CCTNAGC	1 cut(s)	237
Bpu1102I	GCTNAGC	1 cut(s)	174
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	204
BsaWI	WCCGGW	1 cut(s)	51
Bsc4I	CCNNNNNNNGG	2 cut(s)	81, 195
Bse118I	RCCGGY	1 cut(s)	145
Bse1I	ACTGG	2 cut(s)	88, 337
BseDI	CCNNGG	1 cut(s)	204
BseLI	CCNNNNNNNGG	2 cut(s)	81, 195
BseMII	CTCAG	2 cut(s)	188, 228
BseNI	ACTGG	2 cut(s)	88, 337
BseRI	GAGGAG	1 cut(s)	221
BseXI	GCAGC	1 cut(s)	69
BshFI	GGCC	2 cut(s)	95, 203
BsiHKAI	GWGCWC	2 cut(s)	20, 243
BsiSI	CCGG	2 cut(s)	52, 146
BslFI	GGGAC	3 cut(s)	97, 218, 298
BslI	CCNNNNNNNGG	2 cut(s)	81, 195
BsmFI	GGGAC	3 cut(s)	97, 218, 298
BsnI	GGCC	2 cut(s)	95, 203
Bsp1286I	GDGCHC	2 cut(s)	20, 243
Bsp143I	GATC	1 cut(s)	65
Bsp1720I	GCTNAGC	1 cut(s)	174
BspACI	CCGC	7 cut(s)	23, 39, 60, 120, 149, 167, 293
BspANI	GGCC	2 cut(s)	95, 203
BspCNI	CTCAG	2 cut(s)	187, 229
BspLI	GGNNCC	3 cut(s)	85, 86, 234
BspMI	ACCTGC	1 cut(s)	258
BsrBI	CCGCTC	1 cut(s)	167
BsrFI	RCCGGY	1 cut(s)	145
BsrI	ACTGG	2 cut(s)	88, 337
BssAI	RCCGGY	1 cut(s)	145
BssECI	CCNNGG	1 cut(s)	204
BssMI	GATC	1 cut(s)	65
BssNI	GRCGYC	1 cut(s)	5
Bst4CI	ACNGT	2 cut(s)	226, 351
Bst6I	CTCTTC	1 cut(s)	115
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	1 cut(s)	147
BstDEI	CTNAG	3 cut(s)	174, 237, 246
BstKTI	GATC	1 cut(s)	68
BstMBI	GATC	1 cut(s)	65
BstMWI	GCNNNNNNNGC	1 cut(s)	247
BstV1I	GCAGC	1 cut(s)	69
BsuRI	GGCC	2 cut(s)	95, 203
BtgZI	GCGATG	1 cut(s)	315
BtsI	GCAGTG	2 cut(s)	18, 255
BtsIMutI	CAGTG	3 cut(s)	18, 222, 255
BveI	ACCTGC	1 cut(s)	258
Cac8I	GCNNGC	1 cut(s)	147
Cfr10I	RCCGGY	1 cut(s)	145
Cfr13I	GGNCC	3 cut(s)	84, 232, 347
CviAII	CATG	2 cut(s)	36, 311
CviJI	RGCY	9 cut(s)	95, 139, 145, 173, 178, 203, 241, 250, 329
CviKI_1	RGCY	9 cut(s)	95, 139, 145, 173, 178, 203, 241, 250, 329
DdeI	CTNAG	3 cut(s)	174, 237, 246
DpnI	GATC	1 cut(s)	67
DpnII	GATC	1 cut(s)	65
Eam1104I	CTCTTC	1 cut(s)	115
EarI	CTCTTC	1 cut(s)	115
Ecl136II	GAGCTC	1 cut(s)	241
Eco24I	GRGCYC	1 cut(s)	243
Eco47I	GGWCC	3 cut(s)	84, 232, 347
Eco53kI	GAGCTC	1 cut(s)	241
Eco57I	CTGAAG	1 cut(s)	161
EcoICRI	GAGCTC	1 cut(s)	241
EcoO109I	RGGNCCY	1 cut(s)	84
EcoT38I	GRGCYC	1 cut(s)	243
FaeI	CATG	2 cut(s)	39, 314
FaiI	YATR	3 cut(s)	37, 182, 312
FaqI	GGGAC	3 cut(s)	97, 218, 298
FatI	CATG	2 cut(s)	35, 310
FauI	CCCGC	3 cut(s)	16, 53, 300
Fnu4HI	GCNGC	1 cut(s)	58
FriOI	GRGCYC	1 cut(s)	243
Fsp4HI	GCNGC	1 cut(s)	58
GluI	GCNGC	1 cut(s)	58
HaeIII	GGCC	2 cut(s)	95, 203
HapII	CCGG	2 cut(s)	52, 146
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	39, 314
HpaII	CCGG	2 cut(s)	52, 146
HphI	GGTGA	1 cut(s)	347
Hpy166II	GTNNAC	1 cut(s)	220
Hpy188III	TCNNGA	2 cut(s)	82, 361
Hpy8I	GTNNAC	1 cut(s)	220
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	2 cut(s)	193, 205
HpyCH4III	ACNGT	2 cut(s)	226, 351
HpyCH4IV	ACGT	1 cut(s)	77
HpyCH4V	TGCA	1 cut(s)	267
HpyF10VI	GCNNNNNNNGC	1 cut(s)	247
HpyF3I	CTNAG	3 cut(s)	174, 237, 246
HpySE526I	ACGT	1 cut(s)	77
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	39, 314
KflI	GGGWCCC	1 cut(s)	84
KroI	GCCGGC	1 cut(s)	145
KroNI	GCCGGC	1 cut(s)	147
Kzo9I	GATC	1 cut(s)	65
LmnI	GCTCC	1 cut(s)	54
LpnPI	CCDG	8 cut(s)	65, 101, 118, 159, 249, 253, 267, 318
Lsp1109I	GCAGC	1 cut(s)	69
MaeII	ACGT	1 cut(s)	77
MalI	GATC	1 cut(s)	67
MbiI	CCGCTC	1 cut(s)	167
MboI	GATC	1 cut(s)	65
MboII	GAAGA	1 cut(s)	102
MhlI	GDGCHC	2 cut(s)	20, 243
MluCI	AATT	1 cut(s)	192
MmeI	TCCRAC	2 cut(s)	254, 325
MnlI	CCTC	6 cut(s)	118, 129, 163, 199, 263, 270
MroNI	GCCGGC	1 cut(s)	145
MspA1I	CMGCKG	2 cut(s)	60, 295
MspI	CCGG	2 cut(s)	52, 146
MwoI	GCNNNNNNNGC	1 cut(s)	247
NaeI	GCCGGC	1 cut(s)	147
NdeII	GATC	1 cut(s)	65
NgoMIV	GCCGGC	1 cut(s)	145
NlaIII	CATG	2 cut(s)	39, 314
NlaIV	GGNNCC	3 cut(s)	85, 86, 234
NmeAIII	GCCGAG	1 cut(s)	229
PaqCI	CACCTGC	1 cut(s)	258
PcsI	WCGNNNNNNNCGW	1 cut(s)	74
PdiI	GCCGGC	1 cut(s)	147
PkrI	GCNGC	1 cut(s)	59
PpuMI	RGGWCCY	1 cut(s)	84
Psp124BI	GAGCTC	1 cut(s)	243
Psp5II	RGGWCCY	1 cut(s)	84
PspN4I	GGNNCC	3 cut(s)	85, 86, 234
PspPI	GGNCC	3 cut(s)	84, 232, 347
PspPPI	RGGWCCY	1 cut(s)	84
SacI	GAGCTC	1 cut(s)	243
SatI	GCNGC	1 cut(s)	58
Sau3AI	GATC	1 cut(s)	65
Sau96I	GGNCC	3 cut(s)	84, 232, 347
SduI	GDGCHC	2 cut(s)	20, 243
SetI	ASST	6 cut(s)	80, 216, 243, 272, 281, 331
SinI	GGWCC	3 cut(s)	84, 232, 347
Sse9I	AATT	1 cut(s)	192
SsiI	CCGC	7 cut(s)	23, 39, 60, 120, 149, 167, 293
SstI	GAGCTC	1 cut(s)	243
TaaI	ACNGT	2 cut(s)	226, 351
TaiI	ACGT	1 cut(s)	80
TaqI	TCGA	2 cut(s)	8, 68
TasI	AATT	1 cut(s)	192
TscAI	CASTG	3 cut(s)	25, 229, 262
TseI	GCWGC	1 cut(s)	57
TspDTI	ATGAA	1 cut(s)	24
TspRI	CASTG	3 cut(s)	25, 229, 262
VpaK11BI	GGWCC	3 cut(s)	84, 232, 347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.