Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0016638

Physical Location & Seq

Genomic Coordinates Forward (+)

63300995 .. 63301892

Gene Structure 898 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G035570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGCGTCGACTGTCACCACTACCGCTCTGGTTTCTTCCGGCTACACCAAATCGTCAAGCCCCTGTTCGCATCTCAGCAGCACAAGAGCCACAACCTTCGGGCTCACCGCTTGGCCTACCCTTCCGGCCGCGGTGGTGAGAGCGGAGGTTCAGCCGATTAACCCAGAGATTAGGAAGACTGAGGCGAAGGTTGTGGACTCTGTTGTGGTCACTGAGCTCGCTAAGCCCCTCACTGCTTACTGCCGGTGCTGGAGGTCAGGGACTTTCCCCTTGTGTGATGGAAGCCATGTGAAGCATAATAAAGCTACTGGTGACAATGTCGGGCCATTGCTCTTGAAGAAGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000422 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005783 GO:0005789 GO:0006914 GO:0006996 GO:0007005 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009894 GO:0009987 GO:0010150 GO:0010259 GO:0010506 GO:0012505 GO:0016020 GO:0016043 GO:0019222 GO:0019867 GO:0022411 GO:0031090 GO:0031323 GO:0031329 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0031984 GO:0032501 GO:0032502 GO:0042175 GO:0042592 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044432 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046983 GO:0048037 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0051536 GO:0051537 GO:0051540 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0061726 GO:0061919 GO:0065007 GO:0065008 GO:0071840 GO:0072593 GO:0090693 GO:0098588 GO:0098771 GO:0098805 GO:0098827 GO:0099402 GO:1903008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CDGSH

Protein Analysis

115

Amino Acids

12.24

Weight (kDa)

9.24

Isoelectric Point (pI)

40.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CDGSH	PF09360	68 - 96	3.3e-10	Iron-binding zinc finger CDGSH type

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0016638)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51720
fragaria_vesca	FvH4_7g28320
malus_domestica	MD01G1187500.v1.1
prunus_persica	Prupe.2G283900_v2.0.a1
pyrus_communis	pycom01g19940
rosa_chinensis	RchiOBHm_Chr1g0375291
rosa_laevigata	RLG00000026671
rosa_multiflora	Rmu_sc0000554.1_g000037
rosa_roxburghii	Rroxscaffold_4G00282860
rosa_rugosa	Rorug01G0390300
rosa_samantha	Rh1AG400600 Rh1BG363800 Rh1CG377000
rosa_wichuraiana	Rw1G035570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	26, 143
AccI	GTMKAC	1 cut(s)	8
AccII	CGCG	1 cut(s)	131
AciI	CCGC	5 cut(s)	24, 108, 129, 131, 143
AcoI	YGGCCR	1 cut(s)	126
AcyI	GRCGYC	1 cut(s)	5
AgsI	TTSAA	1 cut(s)	337
AluBI	AGCT	2 cut(s)	217, 305
AluI	AGCT	2 cut(s)	217, 305
Alw21I	GWGCWC	1 cut(s)	219
AoxI	GGCC	3 cut(s)	113, 126, 323
ApeKI	GCWGC	1 cut(s)	78
AspS9I	GGNCC	1 cut(s)	323
AsuHPI	GGTGA	4 cut(s)	7, 97, 148, 323
BanII	GRGCYC	2 cut(s)	105, 219
BbsI	GAAGAC	1 cut(s)	182
Bbv12I	GWGCWC	1 cut(s)	219
BbvI	GCAGC	1 cut(s)	90
BccI	CCATC	1 cut(s)	272
BisI	GCNGC	2 cut(s)	79, 129
BlpI	GCTNAGC	1 cut(s)	222
BlsI	GCNGC	2 cut(s)	80, 130
BmgT120I	GGNCC	1 cut(s)	323
BmsI	GCATC	1 cut(s)	79
BpiI	GAAGAC	1 cut(s)	182
BpmI	CTGGAG	1 cut(s)	271
Bpu1102I	GCTNAGC	1 cut(s)	222
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	129
Bse118I	RCCGGY	1 cut(s)	243
Bse1I	ACTGG	1 cut(s)	313
Bse3DI	GCAATG	1 cut(s)	326
BseDI	CCNNGG	1 cut(s)	129
BseMI	GCAATG	1 cut(s)	326
BseMII	CTCAG	3 cut(s)	88, 171, 204
BseNI	ACTGG	1 cut(s)	313
BseX3I	CGGCCG	1 cut(s)	126
BseXI	GCAGC	1 cut(s)	90
Bsh1236I	CGCG	1 cut(s)	131
Bsh1285I	CGRYCG	1 cut(s)	129
BshFI	GGCC	3 cut(s)	115, 128, 325
BsiEI	CGRYCG	1 cut(s)	129
BsiHKAI	GWGCWC	1 cut(s)	219
BsiSI	CCGG	3 cut(s)	39, 125, 244
BslFI	GGGAC	1 cut(s)	274
BsmFI	GGGAC	1 cut(s)	274
BsnI	GGCC	3 cut(s)	115, 128, 325
Bsp1286I	GDGCHC	2 cut(s)	105, 219
Bsp1720I	GCTNAGC	1 cut(s)	222
BspACI	CCGC	5 cut(s)	24, 108, 129, 131, 143
BspANI	GGCC	3 cut(s)	115, 128, 325
BspCNI	CTCAG	3 cut(s)	87, 172, 205
BspFNI	CGCG	1 cut(s)	131
BsrBI	CCGCTC	2 cut(s)	26, 143
BsrDI	GCAATG	1 cut(s)	326
BsrFI	RCCGGY	1 cut(s)	243
BsrI	ACTGG	1 cut(s)	313
BssAI	RCCGGY	1 cut(s)	243
BssECI	CCNNGG	1 cut(s)	129
BssNI	GRCGYC	1 cut(s)	5
Bst4CI	ACNGT	1 cut(s)	13
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	1 cut(s)	219
BstDEI	CTNAG	4 cut(s)	74, 180, 213, 222
BstDSI	CCRYGG	1 cut(s)	129
BstFNI	CGCG	1 cut(s)	131
BstMCI	CGRYCG	1 cut(s)	129
BstMWI	GCNNNNNNNGC	1 cut(s)	223
BstUI	CGCG	1 cut(s)	131
BstV1I	GCAGC	1 cut(s)	90
BstV2I	GAAGAC	1 cut(s)	182
BstZI	CGGCCG	1 cut(s)	126
BsuRI	GGCC	3 cut(s)	115, 128, 325
BtgI	CCRYGG	1 cut(s)	129
BtsI	GCAGTG	1 cut(s)	231
BtsIMutI	CAGTG	2 cut(s)	210, 231
Cac8I	GCNNGC	1 cut(s)	219
Cfr10I	RCCGGY	1 cut(s)	243
Cfr13I	GGNCC	1 cut(s)	323
Cfr42I	CCGCGG	1 cut(s)	132
CviAII	CATG	1 cut(s)	287
DdeI	CTNAG	4 cut(s)	74, 180, 213, 222
EaeI	YGGCCR	1 cut(s)	126
EagI	CGGCCG	1 cut(s)	126
Ecl136II	GAGCTC	1 cut(s)	217
EclXI	CGGCCG	1 cut(s)	126
Eco24I	GRGCYC	2 cut(s)	105, 219
Eco52I	CGGCCG	1 cut(s)	126
Eco53kI	GAGCTC	1 cut(s)	217
EcoICRI	GAGCTC	1 cut(s)	217
EcoT38I	GRGCYC	2 cut(s)	105, 219
FaeI	CATG	1 cut(s)	290
FaiI	YATR	2 cut(s)	288, 297
FaqI	GGGAC	1 cut(s)	274
FatI	CATG	1 cut(s)	286
FblI	GTMKAC	1 cut(s)	8
Fnu4HI	GCNGC	2 cut(s)	79, 129
FriOI	GRGCYC	2 cut(s)	105, 219
Fsp4HI	GCNGC	2 cut(s)	79, 129
GluI	GCNGC	2 cut(s)	79, 129
GsuI	CTGGAG	1 cut(s)	271
HaeIII	GGCC	3 cut(s)	115, 128, 325
HapII	CCGG	3 cut(s)	39, 125, 244
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	290
HincII	GTYRAC	1 cut(s)	9
HindII	GTYRAC	1 cut(s)	9
HinfI	GANTC	1 cut(s)	197
HpaII	CCGG	3 cut(s)	39, 125, 244
HphI	GGTGA	4 cut(s)	7, 97, 148, 323
Hpy166II	GTNNAC	2 cut(s)	9, 196
Hpy188III	TCNNGA	1 cut(s)	334
Hpy8I	GTNNAC	2 cut(s)	9, 196
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	4 cut(s)	106, 131, 181, 334
HpyCH4III	ACNGT	1 cut(s)	13
HpyF10VI	GCNNNNNNNGC	1 cut(s)	223
HpyF3I	CTNAG	4 cut(s)	74, 180, 213, 222
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	290
KspI	CCGCGG	1 cut(s)	132
LpnPI	CCDG	9 cut(s)	14, 52, 76, 138, 177, 235, 243, 257, 294
Lsp1109I	GCAGC	1 cut(s)	90
LweI	GCATC	1 cut(s)	79
MaeIII	GTNAC	3 cut(s)	13, 208, 311
MbiI	CCGCTC	2 cut(s)	26, 143
MboII	GAAGA	2 cut(s)	27, 187
MhlI	GDGCHC	2 cut(s)	105, 219
MlyI	GAGTC	1 cut(s)	191
MnlI	CCTC	4 cut(s)	139, 175, 239, 246
MseI	TTAA	1 cut(s)	159
MspA1I	CMGCKG	1 cut(s)	131
MspI	CCGG	3 cut(s)	39, 125, 244
MvnI	CGCG	1 cut(s)	131
MwoI	GCNNNNNNNGC	1 cut(s)	223
NlaIII	CATG	1 cut(s)	290
NmuCI	GTSAC	3 cut(s)	13, 208, 311
PflFI	GACNNNGTC	1 cut(s)	317
PkrI	GCNGC	2 cut(s)	80, 130
PleI	GAGTC	1 cut(s)	191
PpsI	GAGTC	1 cut(s)	191
Psp124BI	GAGCTC	1 cut(s)	219
PspPI	GGNCC	1 cut(s)	323
PsyI	GACNNNGTC	1 cut(s)	317
SacI	GAGCTC	1 cut(s)	219
SacII	CCGCGG	1 cut(s)	132
SalI	GTCGAC	1 cut(s)	7
SaqAI	TTAA	1 cut(s)	159
SatI	GCNGC	2 cut(s)	79, 129
Sau96I	GGNCC	1 cut(s)	323
SchI	GAGTC	1 cut(s)	191
SduI	GDGCHC	2 cut(s)	105, 219
SetI	ASST	6 cut(s)	98, 150, 192, 219, 257, 307
SfaNI	GCATC	1 cut(s)	79
Sfr303I	CCGCGG	1 cut(s)	132
SgrBI	CCGCGG	1 cut(s)	132
SsiI	CCGC	5 cut(s)	24, 108, 129, 131, 143
SstI	GAGCTC	1 cut(s)	219
TaaI	ACNGT	1 cut(s)	13
TaqI	TCGA	1 cut(s)	8
TauI	GCSGC	1 cut(s)	131
Tru1I	TTAA	1 cut(s)	159
Tru9I	TTAA	1 cut(s)	159
TscAI	CASTG	2 cut(s)	217, 238
TseFI	GTSAC	3 cut(s)	13, 208, 311
TseI	GCWGC	1 cut(s)	78
Tsp45I	GTSAC	3 cut(s)	13, 208, 311
TspRI	CASTG	2 cut(s)	217, 238
Tth111I	GACNNNGTC	1 cut(s)	317
XcmI	CCANNNNNNNNNTGG	1 cut(s)	25
XmiI	GTMKAC	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.