Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0016638

Physical Location & Seq

Genomic Coordinates Reverse (-)

4975596 .. 4976833

Gene Structure 1238 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00282860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGCGTCGATTATCACCACTGCCGCTCTGGTTTCTTCCGGCTACACCAAATCGTCAAGCCCCTGTTCGCATCTCAGCAGCACAAGAGCCACAACCTTCGGAGCTCACAGCTTCGCCTACCCTTCCGGCGTAAATTTCAGCCGGAGGCCGAAGACAAGCACGTTGGTGAGAGCGGAGGTTCAGCCGCTTAACCCAGAGATTAGAAAGACTGAGGCGAAGGTTGTGGACTCTGTTGTGGTCACTGAGCTCGCTAAGCCCCTCACTGCTTATTGCAGGTGTTGGAGGTCAGGGACTTTCCCCTTGTGCGATGGAAGCCACGTGAAGCATAATAAAGCTACTGGTGACAATGTCGGGCCATTGCTCTTGAAGAAGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000422 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005783 GO:0005789 GO:0006914 GO:0006996 GO:0007005 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009894 GO:0009987 GO:0010150 GO:0010259 GO:0010506 GO:0012505 GO:0016020 GO:0016043 GO:0019222 GO:0019867 GO:0022411 GO:0031090 GO:0031323 GO:0031329 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0031984 GO:0032501 GO:0032502 GO:0042175 GO:0042592 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044432 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046983 GO:0048037 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0051536 GO:0051537 GO:0051540 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0061726 GO:0061919 GO:0065007 GO:0065008 GO:0071840 GO:0072593 GO:0090693 GO:0098588 GO:0098771 GO:0098805 GO:0098827 GO:0099402 GO:1903008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CDGSH

Protein Analysis

125

Amino Acids

13.42

Weight (kDa)

9.65

Isoelectric Point (pI)

43.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CDGSH	PF09360	78 - 106	4.2e-10	Iron-binding zinc finger CDGSH type

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016638)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51720
fragaria_vesca	FvH4_7g28320
malus_domestica	MD01G1187500.v1.1
prunus_persica	Prupe.2G283900_v2.0.a1
pyrus_communis	pycom01g19940
rosa_chinensis	RchiOBHm_Chr1g0375291
rosa_laevigata	RLG00000026671
rosa_multiflora	Rmu_sc0000554.1_g000037
rosa_roxburghii	Rroxscaffold_4G00282860
rosa_rugosa	Rorug01G0390300
rosa_samantha	Rh1AG400600 Rh1BG363800 Rh1CG377000
rosa_wichuraiana	Rw1G035570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	264
Acc36I	ACCTGC	1 cut(s)	264
AccBSI	CCGCTC	2 cut(s)	26, 173
AciI	CCGC	3 cut(s)	24, 173, 185
AcsI	RAATTY	1 cut(s)	133
AcvI	CACGTG	1 cut(s)	319
AcyI	GRCGYC	1 cut(s)	5
AgsI	TTSAA	1 cut(s)	367
AleI	CACNNNNGTG	1 cut(s)	164
AluBI	AGCT	4 cut(s)	104, 111, 247, 335
AluI	AGCT	4 cut(s)	104, 111, 247, 335
Alw21I	GWGCWC	2 cut(s)	106, 249
AoxI	GGCC	2 cut(s)	146, 353
ApeKI	GCWGC	1 cut(s)	78
ApoI	RAATTY	1 cut(s)	133
AspS9I	GGNCC	1 cut(s)	353
AsuHPI	GGTGA	3 cut(s)	7, 178, 353
BanII	GRGCYC	2 cut(s)	106, 249
BbrPI	CACGTG	1 cut(s)	319
BbsI	GAAGAC	1 cut(s)	158
Bbv12I	GWGCWC	2 cut(s)	106, 249
BbvI	GCAGC	1 cut(s)	90
BccI	CCATC	1 cut(s)	302
BfuAI	ACCTGC	1 cut(s)	264
BisI	GCNGC	3 cut(s)	24, 79, 185
BlpI	GCTNAGC	1 cut(s)	252
BlsI	GCNGC	3 cut(s)	25, 80, 186
BmgT120I	GGNCC	1 cut(s)	353
BmsI	GCATC	1 cut(s)	79
BpiI	GAAGAC	1 cut(s)	158
Bpu1102I	GCTNAGC	1 cut(s)	252
BsaAI	YACGTR	1 cut(s)	319
BsaHI	GRCGYC	1 cut(s)	5
Bse1I	ACTGG	1 cut(s)	343
Bse3DI	GCAATG	1 cut(s)	356
BseMI	GCAATG	1 cut(s)	356
BseMII	CTCAG	3 cut(s)	88, 201, 234
BseNI	ACTGG	1 cut(s)	343
BseXI	GCAGC	1 cut(s)	90
BshFI	GGCC	2 cut(s)	148, 355
BsiHKAI	GWGCWC	2 cut(s)	106, 249
BsiSI	CCGG	3 cut(s)	39, 126, 142
BslFI	GGGAC	1 cut(s)	304
BsmFI	GGGAC	1 cut(s)	304
BsnI	GGCC	2 cut(s)	148, 355
Bsp1286I	GDGCHC	2 cut(s)	106, 249
Bsp1720I	GCTNAGC	1 cut(s)	252
BspACI	CCGC	3 cut(s)	24, 173, 185
BspANI	GGCC	2 cut(s)	148, 355
BspCNI	CTCAG	3 cut(s)	87, 202, 235
BspMI	ACCTGC	1 cut(s)	264
BsrBI	CCGCTC	2 cut(s)	26, 173
BsrDI	GCAATG	1 cut(s)	356
BsrI	ACTGG	1 cut(s)	343
BssNI	GRCGYC	1 cut(s)	5
BstACI	GRCGYC	1 cut(s)	5
BstBAI	YACGTR	1 cut(s)	319
BstC8I	GCNNGC	1 cut(s)	249
BstDEI	CTNAG	4 cut(s)	74, 210, 243, 252
BstMWI	GCNNNNNNNGC	2 cut(s)	253, 312
BstV1I	GCAGC	1 cut(s)	90
BstV2I	GAAGAC	1 cut(s)	158
BsuRI	GGCC	2 cut(s)	148, 355
BtgZI	GCGATG	1 cut(s)	321
BtsI	GCAGTG	2 cut(s)	18, 261
BtsIMutI	CAGTG	3 cut(s)	18, 240, 261
BveI	ACCTGC	1 cut(s)	264
Cac8I	GCNNGC	1 cut(s)	249
Cfr13I	GGNCC	1 cut(s)	353
DdeI	CTNAG	4 cut(s)	74, 210, 243, 252
Ecl136II	GAGCTC	2 cut(s)	104, 247
Eco24I	GRGCYC	2 cut(s)	106, 249
Eco53kI	GAGCTC	2 cut(s)	104, 247
Eco72I	CACGTG	1 cut(s)	319
EcoICRI	GAGCTC	2 cut(s)	104, 247
EcoT38I	GRGCYC	2 cut(s)	106, 249
FaiI	YATR	1 cut(s)	327
FaqI	GGGAC	1 cut(s)	304
Fnu4HI	GCNGC	3 cut(s)	24, 79, 185
FriOI	GRGCYC	2 cut(s)	106, 249
Fsp4HI	GCNGC	3 cut(s)	24, 79, 185
GluI	GCNGC	3 cut(s)	24, 79, 185
HaeIII	GGCC	2 cut(s)	148, 355
HapII	CCGG	3 cut(s)	39, 126, 142
Hin1I	GRCGYC	1 cut(s)	5
HinfI	GANTC	1 cut(s)	227
HpaII	CCGG	3 cut(s)	39, 126, 142
HphI	GGTGA	3 cut(s)	7, 178, 353
Hpy166II	GTNNAC	1 cut(s)	226
Hpy188I	TCNGA	1 cut(s)	101
Hpy188III	TCNNGA	1 cut(s)	364
Hpy8I	GTNNAC	1 cut(s)	226
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	4 cut(s)	106, 132, 211, 364
HpyCH4IV	ACGT	2 cut(s)	161, 318
HpyCH4V	TGCA	1 cut(s)	273
HpyF10VI	GCNNNNNNNGC	2 cut(s)	253, 312
HpyF3I	CTNAG	4 cut(s)	74, 210, 243, 252
HpySE526I	ACGT	2 cut(s)	161, 318
Hsp92I	GRCGYC	1 cut(s)	5
LmnI	GCTCC	1 cut(s)	101
LpnPI	CCDG	9 cut(s)	14, 52, 76, 139, 155, 207, 259, 273, 324
Lsp1109I	GCAGC	1 cut(s)	90
LweI	GCATC	1 cut(s)	79
MaeII	ACGT	2 cut(s)	161, 318
MaeIII	GTNAC	2 cut(s)	238, 341
MbiI	CCGCTC	2 cut(s)	26, 173
MboII	GAAGA	2 cut(s)	27, 163
MhlI	GDGCHC	2 cut(s)	106, 249
MluCI	AATT	1 cut(s)	133
MlyI	GAGTC	1 cut(s)	221
MmeI	TCCRAC	1 cut(s)	260
MnlI	CCTC	5 cut(s)	138, 169, 205, 269, 276
MseI	TTAA	1 cut(s)	189
MslI	CAYNNNNRTG	1 cut(s)	164
MspI	CCGG	3 cut(s)	39, 126, 142
MwoI	GCNNNNNNNGC	2 cut(s)	253, 312
NmuCI	GTSAC	2 cut(s)	238, 341
OliI	CACNNNNGTG	1 cut(s)	164
PaqCI	CACCTGC	1 cut(s)	264
PflFI	GACNNNGTC	1 cut(s)	347
PkrI	GCNGC	3 cut(s)	25, 80, 186
PleI	GAGTC	1 cut(s)	221
PmaCI	CACGTG	1 cut(s)	319
PmlI	CACGTG	1 cut(s)	319
PpsI	GAGTC	1 cut(s)	221
Ppu21I	YACGTR	1 cut(s)	319
Psp124BI	GAGCTC	2 cut(s)	106, 249
PspCI	CACGTG	1 cut(s)	319
PspPI	GGNCC	1 cut(s)	353
PsyI	GACNNNGTC	1 cut(s)	347
RseI	CAYNNNNRTG	1 cut(s)	164
SacI	GAGCTC	2 cut(s)	106, 249
SaqAI	TTAA	1 cut(s)	189
SatI	GCNGC	3 cut(s)	24, 79, 185
Sau96I	GGNCC	1 cut(s)	353
SchI	GAGTC	1 cut(s)	221
SduI	GDGCHC	2 cut(s)	106, 249
SfaNI	GCATC	1 cut(s)	79
SmiMI	CAYNNNNRTG	1 cut(s)	164
Sse9I	AATT	1 cut(s)	133
SsiI	CCGC	3 cut(s)	24, 173, 185
SstI	GAGCTC	2 cut(s)	106, 249
TaiI	ACGT	2 cut(s)	164, 321
TaqI	TCGA	1 cut(s)	8
TasI	AATT	1 cut(s)	133
TauI	GCSGC	2 cut(s)	26, 187
Tru1I	TTAA	1 cut(s)	189
Tru9I	TTAA	1 cut(s)	189
TscAI	CASTG	3 cut(s)	25, 247, 268
TseFI	GTSAC	2 cut(s)	238, 341
TseI	GCWGC	1 cut(s)	78
Tsp45I	GTSAC	2 cut(s)	238, 341
TspRI	CASTG	3 cut(s)	25, 247, 268
Tth111I	GACNNNGTC	1 cut(s)	347
XapI	RAATTY	1 cut(s)	133
XcmI	CCANNNNNNNNNTGG	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.